Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1118
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 811
70 % 39 68 857
50 % 39 196 211
40 % 39 196 234
30 % 39 196 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 699
70 % 39 74 744
50 % 39 74 807
40 % 40 78 798
30 % 40 78 802
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 623
95 % 39 68 765 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 792
70 % 39 68 839
50 % 39 206 203
40 % 54 625 23
30 % 54 625 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 548
95 % 39 74 691 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 714
70 % 39 74 759
50 % 39 74 814
40 % 39 203 226
30 % 39 203 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3001
95 % 36 47 1228 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1251
70 % 39 68 840
50 % 39 205 206
40 % 39 205 224
30 % 39 205 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 678 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 703
70 % 39 74 749
50 % 39 76 786
40 % 39 76 815
30 % 39 79 788
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 638
95 % 39 68 785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 859
50 % 39 70 861
40 % 39 70 894
30 % 39 70 880
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1019
95 % 39 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 817
70 % 39 68 862
50 % 39 68 909
40 % 39 72 861
30 % 39 72 867
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 624
95 % 39 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 841
50 % 39 70 872
40 % 39 70 903
30 % 39 71 875
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 651
95 % 39 68 775 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 801
70 % 39 68 848
50 % 39 68 897
40 % 39 68 923
30 % 39 203 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 552
95 % 39 74 692 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 717
70 % 39 74 764
50 % 39 77 772
40 % 53 482 42
30 % 53 482 61
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 654
95 % 39 74 689 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 712
70 % 39 74 757
50 % 39 74 813
40 % 39 211 218
30 % 39 211 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 684 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 707
70 % 39 74 753
50 % 39 212 200
40 % 39 213 217
30 % 39 213 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 596
95 % 37 70 738 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 766
70 % 37 70 807
50 % 37 70 862
40 % 37 70 886
30 % 37 70 882
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 546
95 % 39 74 685 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 708
70 % 39 74 754
50 % 39 74 809
40 % 53 438 52
30 % 53 464 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 631
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 802
70 % 39 68 849
50 % 39 68 898
40 % 39 70 891
30 % 39 71 874
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 786 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 814
70 % 39 68 860
50 % 39 68 906
40 % 39 68 930
30 % 39 70 889
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 705
95 % 36 63 869 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 898
70 % 36 63 933
50 % 36 63 980
40 % 36 63 1004
30 % 36 63 990
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3772
95 % 11 17 4128 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4179
70 % 11 17 4097
50 % 11 17 3975
40 % 11 17 3778
30 % 11 17 3448
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 767 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 794
70 % 39 68 842
50 % 39 69 874
40 % 39 69 906
30 % 39 69 894
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 652
95 % 39 68 779 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 806
70 % 39 68 853
50 % 39 198 210
40 % 39 198 232
30 % 39 198 248
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 622
95 % 39 68 764 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 791
70 % 39 68 838
50 % 39 68 891
40 % 39 193 237
30 % 39 193 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2582
95 % 39 74 677 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 702
70 % 39 74 748
50 % 39 74 804
40 % 39 76 814
30 % 40 78 799
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 547
95 % 39 74 687 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 711
70 % 39 74 756
50 % 39 74 812
40 % 40 205 220
30 % 40 205 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 810
70 % 39 68 836
50 % 39 68 903
40 % 39 203 227
30 % 54 614 41
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1004
95 % 36 47 1221 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 790
70 % 39 68 837
50 % 56 107 409
40 % 63 130 322
30 % 77 280 158
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 682
95 % 37 64 836 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 868
70 % 37 64 909
50 % 37 64 959
40 % 37 64 981
30 % 37 64 969
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1013
95 % 36 47 1225 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1249
70 % 36 47 1264
50 % 39 74 805
40 % 39 79 776
30 % 39 79 787
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1154
95 % 33 42 1370 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1398
70 % 33 42 1424
50 % 34 46 1283
40 % 34 46 1272
30 % 34 93 638

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 12 J 50S ribosomal protein L13P 2238
2 1VQO 12 J 50S ribosomal protein L13P 2238
3 1VQ8 12 J 50S ribosomal protein L13P 2238
4 1S72 12 J 50S ribosomal protein L13P 2238
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
6 1YHQ 12 J 50S ribosomal protein L13P 2238
7 1VQP 12 J 50S ribosomal protein L13P 2238
8 1VQM 12 J 50S ribosomal protein L13P 2238
9 3CC2 10 J 50S ribosomal protein L13P 2238
10 1VQL 12 J 50S ribosomal protein L13P 2238
11 1VQK 12 J 50S ribosomal protein L13P 2238
12 1VQN 13 J 50S ribosomal protein L13P 2238
13 1YIJ 12 J 50S ribosomal protein L13P 2238
14 1YI2 12 J 50S ribosomal protein L13P 2238
15 1VQ9 12 J 50S ribosomal protein L13P 2238
16 1VQ7 12 J 50S ribosomal protein L13P 2238
17 3CCM 10 J 50S ribosomal protein L13P 2238
18 1VQ5 12 J 50S ribosomal protein L13P 2238
19 3CC7 10 J 50S ribosomal protein L13P 2238
20 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
21 3CCE 10 J 50S ribosomal protein L13P 2238
22 3G6E 11 J 50S ribosomal protein L13P 2238
23 3CPW 11 I 50S ribosomal protein L13P 2238
24 3CCU 10 J 50S ribosomal protein L13P 2238
25 1VQ6 13 J 50S ribosomal protein L13P 2238
26 1M90 12 K RIBOSOMAL PROTEIN L13 2238
27 3CCL 10 J 50S ribosomal protein L13P 2238
28 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
29 1YJ9 12 J 50S ribosomal protein L13P 2238
30 3CD6 10 J 50S ribosomal protein L13P 2238
31 3CCV 10 J 50S ribosomal protein L13P 2238
32 3CC4 10 J 50S ribosomal protein L13P 2238
33 2OTL 11 J 50S ribosomal protein L13P 2238
34 3G71 11 J 50S ribosomal protein L13P 2238
35 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
36 1VQ4 12 J 50S ribosomal protein L13P 2238
37 1YJN 12 J 50S ribosomal protein L13P 2238
38 3CMA 10 J 50S ribosomal protein L13P 2238
39 3CCS 10 J 50S ribosomal protein L13P 2238
40 3CCQ 10 J 50S ribosomal protein L13P 2238
41 3I56 10 J 50S ribosomal protein L13P 2238
42 3CCR 10 J 50S ribosomal protein L13P 2238
43 2OTJ 11 J 50S ribosomal protein L13P 2238
44 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
45 3OW2 11 I 50S ribosomal protein L13P 2238
46 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
47 1QVG 12 I 50S ribosomal protein L13P 2238
48 3CME 10 J 50S ribosomal protein L13P 2238
49 2QEX 11 J 50S ribosomal protein L13P 2238
50 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
51 1N8R 11 K 50S ribosomal protein L13P 2238
52 1Q81 12 K 50S ribosomal protein L13P 2238
53 1Q82 12 K 50S ribosomal protein L13P 2238
54 1QVF 12 I 50S ribosomal protein L13P 2238
55 1NJI 11 K 50S ribosomal protein L13P 2238
56 1K73 11 K RIBOSOMAL PROTEIN L13 2238
57 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
58 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
59 3I55 11 J 50S ribosomal protein L13P 2238
60 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
61 1Q86 12 K 50S ribosomal protein L13P 2238
62 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
63 3G4S 11 J 50S ribosomal protein L13P 2238
64 3CCJ 10 J 50S ribosomal protein L13P 2238
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
66 2QA4 12 J 50S ribosomal protein L13P 2238
67 1Q7Y 12 K 50S ribosomal protein L13P 2238
68 4V4P 12 AM 50S ribosomal protein L13 274
69 4V4R 34 BN 50S ribosomal protein L13 274
70 4V4S 34 BN 50S ribosomal protein L13 274
71 4V4T 33 BN 50S ribosomal protein L13 274
72 4ADX 20 J RPL13 145262
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274