Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 718
95 % 40 68 598
90 % 40 68 635
70 % 40 68 674
50 % 40 158 214
40 % 40 160 233
30 % 40 160 245
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 345
95 % 40 74 509
90 % 40 74 545
70 % 40 74 584
50 % 40 74 657
40 % 41 77 667
30 % 41 78 667
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 786
95 % 40 68 607
90 % 40 68 641
70 % 40 68 681
50 % 40 163 208
40 % 40 163 229
30 % 51 479 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 344
95 % 40 74 508
90 % 40 74 542
70 % 40 74 580
50 % 40 74 654
40 % 40 74 700
30 % 50 468 38
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 23 1860
95 % 37 47 1010
90 % 37 47 1030
70 % 40 68 675
50 % 40 159 215
40 % 40 159 237
30 % 40 159 249
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 342
95 % 40 74 506
90 % 40 74 538
70 % 40 74 576
50 % 40 76 634
40 % 40 76 678
30 % 40 79 657
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 418
95 % 40 68 609
90 % 40 68 643
70 % 40 68 683
50 % 40 70 705
40 % 40 70 746
30 % 40 70 750
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 724
95 % 40 68 605
90 % 40 68 640
70 % 40 68 680
50 % 40 68 733
40 % 40 72 717
30 % 40 72 719
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 420
95 % 40 68 612
90 % 40 68 645
70 % 40 68 686
50 % 40 70 707
40 % 40 70 748
30 % 40 71 735
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 67 431
95 % 40 68 603
90 % 40 68 638
70 % 40 68 678
50 % 40 68 731
40 % 40 68 765
30 % 40 162 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 351
95 % 40 74 514
90 % 40 74 551
70 % 40 74 589
50 % 40 76 636
40 % 40 78 657
30 % 50 388 57
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 67 426
95 % 40 74 501
90 % 40 74 533
70 % 40 74 569
50 % 40 74 647
40 % 40 167 222
30 % 40 167 230
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 349
95 % 40 74 512
90 % 40 74 548
70 % 40 74 588
50 % 40 167 203
40 % 40 167 224
30 % 40 167 232
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 70 397
95 % 38 70 579
90 % 38 70 617
70 % 38 70 654
50 % 38 70 708
40 % 38 70 750
30 % 38 70 753
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 352
95 % 40 74 515
90 % 40 74 552
70 % 40 74 590
50 % 40 74 659
40 % 40 74 703
30 % 40 74 702
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 412
95 % 40 68 604
90 % 40 68 639
70 % 40 68 679
50 % 40 68 732
40 % 40 70 742
30 % 40 71 733
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 422
95 % 40 68 614
90 % 40 68 647
70 % 40 68 688
50 % 40 68 738
40 % 40 68 769
30 % 40 68 773
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 63 475
95 % 37 63 675
90 % 37 63 705
70 % 37 63 747
50 % 37 63 797
40 % 37 63 824
30 % 37 63 821
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 2773
95 % 12 17 3475
90 % 12 17 3524
70 % 12 17 3475
50 % 12 17 3403
40 % 12 17 3290
30 % 12 17 3086
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 423
95 % 40 68 615
90 % 40 68 648
70 % 40 68 691
50 % 40 69 719
40 % 40 69 758
30 % 40 69 764
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 731
95 % 40 68 616
90 % 40 68 649
70 % 40 68 692
50 % 40 160 213
40 % 40 160 235
30 % 40 160 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 421
95 % 40 68 613
90 % 40 68 646
70 % 40 68 687
50 % 40 68 737
40 % 40 68 768
30 % 40 156 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 23 1853
95 % 40 74 504
90 % 40 74 535
70 % 40 74 575
50 % 40 74 650
40 % 40 76 677
30 % 40 77 675
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 74 343
95 % 40 74 507
90 % 40 74 540
70 % 40 74 578
50 % 40 74 652
40 % 41 167 223
30 % 41 167 231
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 411
95 % 40 68 602
90 % 40 68 637
70 % 40 68 677
50 % 40 68 730
40 % 40 161 230
30 % 51 473 36
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 725
95 % 37 47 1014
90 % 40 68 642
70 % 40 68 682
50 % 56 104 303
40 % 63 118 276
30 % 63 120 284
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 2176
95 % 38 64 656
90 % 38 64 687
70 % 38 64 726
50 % 38 64 783
40 % 38 64 810
30 % 38 65 800
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 721
95 % 37 47 1012
90 % 37 47 1033
70 % 37 47 1070
50 % 40 74 653
40 % 40 79 645
30 % 40 79 660
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 42 831
95 % 34 42 1143
90 % 34 42 1166
70 % 34 42 1210
50 % 35 46 1087
40 % 35 46 1104
30 % 35 84 588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.