POP-OUT | CLOSE
 
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482A
Sequence Clustering and Redundancy Reduction Results
3CCS
Sequence Clusters for the Sequence Entities in PDB 3CCS
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 46 514
95% 39 67 467
90% 39 67 492
70% 39 67 526
50% 39 123 264
40% 39 125 294
30% 39 125 311
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 281
95% 40 74 398
90% 40 74 424
70% 40 74 450
50% 40 74 497
40% 41 77 501
30% 41 78 505
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 44 561
95% 40 68 454
90% 40 68 478
70% 40 68 510
50% 40 132 246
40% 40 132 272
30% 47 443 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 280
95% 40 74 397
90% 40 74 423
70% 40 74 449
50% 40 74 496
40% 40 74 529
30% 46 435 53
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 23 1455
95% 37 47 736
90% 37 47 765
70% 40 68 502
50% 40 130 253
40% 40 130 279
30% 40 130 304
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 278
95% 40 74 395
90% 40 74 421
70% 40 74 447
50% 40 76 479
40% 40 76 510
30% 40 78 502
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 318
95% 40 68 456
90% 40 68 481
70% 40 68 513
50% 40 70 535
40% 40 70 563
30% 40 70 567
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 47 502
95% 40 68 452
90% 40 68 476
70% 40 68 508
50% 40 68 558
40% 40 70 562
30% 40 71 552
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 321
95% 40 68 458
90% 40 68 483
70% 40 68 515
50% 40 70 537
40% 40 70 566
30% 40 71 554
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 67 331
95% 40 68 450
90% 40 68 474
70% 40 68 506
50% 40 68 555
40% 40 68 588
30% 40 133 293
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 285
95% 40 74 400
90% 40 74 426
70% 40 74 452
50% 40 76 480
40% 40 78 492
30% 46 383 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 67 328
95% 40 74 390
90% 40 74 417
70% 40 74 444
50% 40 74 491
40% 40 130 278
30% 40 130 302
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 284
95% 40 74 399
90% 40 74 425
70% 40 74 451
50% 40 139 232
40% 40 139 258
30% 40 139 272
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 70 305
95% 38 70 434
90% 38 70 455
70% 38 70 485
50% 38 70 539
40% 38 70 568
30% 38 70 569
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 286
95% 40 74 401
90% 40 74 427
70% 40 74 453
50% 40 74 498
40% 40 74 530
30% 40 74 531
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 316
95% 40 68 451
90% 40 68 475
70% 40 68 507
50% 40 68 556
40% 40 70 561
30% 40 71 551
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 323
95% 40 68 460
90% 40 68 485
70% 40 68 517
50% 40 68 562
40% 40 68 593
30% 40 68 589
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 63 348
95% 37 63 506
90% 37 63 529
70% 37 63 565
50% 37 63 611
40% 37 63 639
30% 37 63 642
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 17 2193
95% 12 17 2765
90% 12 17 2812
70% 12 17 2815
50% 12 17 2800
40% 12 17 2737
30% 12 17 2549
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 325
95% 40 68 462
90% 40 68 487
70% 40 68 519
50% 40 69 550
40% 40 69 582
30% 40 69 582
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 47 507
95% 40 68 463
90% 40 68 488
70% 40 68 520
50% 40 132 247
40% 40 132 273
30% 40 132 297
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 322
95% 40 68 459
90% 40 68 484
70% 40 68 516
50% 40 68 561
40% 40 68 592
30% 40 131 301
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 23 1450
95% 40 74 393
90% 40 74 419
70% 40 74 446
50% 40 74 493
40% 40 76 509
30% 40 77 508
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 74 279
95% 40 74 396
90% 40 74 422
70% 40 74 448
50% 40 74 494
40% 40 136 265
30% 40 136 287
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 68 315
95% 40 68 449
90% 40 68 473
70% 40 68 505
50% 40 68 554
40% 40 125 295
30% 47 432 55
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 47 504
95% 37 47 744
90% 40 68 480
70% 40 68 512
50% 56 97 289
40% 62 106 280
30% 62 108 296
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 20 1701
95% 38 64 491
90% 38 64 514
70% 38 64 552
50% 38 64 598
40% 38 64 627
30% 38 65 623
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 47 500
95% 37 47 738
90% 37 47 767
70% 37 47 810
50% 40 74 495
40% 40 78 488
30% 40 78 504
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 42 600
95% 34 42 858
90% 34 42 883
70% 34 42 927
50% 34 43 975
40% 34 43 1009
30% 34 55 755
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.