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An Information Portal to 105906 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Sequence Clustering and Redundancy Reduction Results
3CCR
Sequence Clusters for the Sequence Entities in PDB 3CCR
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 46 558
95% 42 67 475
90% 42 67 499
70% 42 67 537
50% 42 115 243
40% 42 117 266
30% 42 117 286
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 287
95% 43 74 409
90% 43 74 433
70% 43 74 462
50% 43 74 508
40% 44 77 511
30% 44 78 514
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 44 631
95% 43 68 463
90% 43 68 486
70% 43 68 522
50% 43 118 234
40% 43 118 263
30% 49 320 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 286
95% 43 74 408
90% 43 74 432
70% 43 74 461
50% 43 74 507
40% 43 74 544
30% 48 312 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1496
95% 40 47 790
90% 40 47 823
70% 43 68 515
50% 43 116 240
40% 43 116 271
30% 43 116 293
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 284
95% 43 74 406
90% 43 74 430
70% 43 74 459
50% 43 76 486
40% 43 76 520
30% 43 78 512
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 321
95% 43 68 465
90% 43 68 489
70% 43 68 525
50% 43 70 549
40% 43 70 583
30% 43 70 583
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 543
95% 43 68 461
90% 43 68 484
70% 43 68 520
50% 43 68 583
40% 43 70 582
30% 43 71 564
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 324
95% 43 68 467
90% 43 68 491
70% 43 68 527
50% 43 70 552
40% 43 70 587
30% 43 71 566
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 333
95% 43 68 459
90% 43 68 482
70% 43 68 518
50% 43 68 580
40% 43 68 614
30% 43 119 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 290
95% 43 74 411
90% 43 74 435
70% 43 74 465
50% 43 76 488
40% 43 78 503
30% 48 274 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 330
95% 43 74 400
90% 43 74 424
70% 43 74 454
50% 43 74 501
40% 43 122 253
30% 43 122 271
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 289
95% 43 74 410
90% 43 74 434
70% 43 74 464
50% 43 125 220
40% 43 125 248
30% 43 125 263
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 70 308
95% 41 70 445
90% 41 70 465
70% 41 70 500
50% 41 70 553
40% 41 70 588
30% 41 70 585
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 291
95% 43 74 412
90% 43 74 436
70% 43 74 466
50% 43 74 510
40% 43 74 546
30% 43 74 543
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 319
95% 43 68 460
90% 43 68 483
70% 43 68 519
50% 43 68 581
40% 43 70 581
30% 43 71 563
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 326
95% 43 68 469
90% 43 68 493
70% 43 68 529
50% 43 68 588
40% 43 68 621
30% 43 68 614
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 63 350
95% 40 63 512
90% 40 63 538
70% 40 63 579
50% 40 63 653
40% 40 63 679
30% 40 63 681
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 2251
95% 15 17 2842
90% 15 17 2885
70% 15 17 2888
50% 15 17 2865
40% 15 17 2797
30% 15 17 2601
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 328
95% 43 68 471
90% 43 68 495
70% 43 68 531
50% 43 69 567
40% 43 69 606
30% 43 69 601
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 553
95% 43 68 472
90% 43 68 496
70% 43 68 532
50% 43 118 235
40% 43 118 264
30% 43 118 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 325
95% 43 68 468
90% 43 68 492
70% 43 68 528
50% 43 68 587
40% 43 68 620
30% 43 117 289
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1489
95% 43 74 404
90% 43 74 428
70% 43 74 458
50% 43 74 504
40% 43 76 519
30% 43 77 517
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 285
95% 43 74 407
90% 43 74 431
70% 43 74 460
50% 43 74 505
40% 43 122 256
30% 43 122 273
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 318
95% 43 68 458
90% 43 68 481
70% 43 68 517
50% 43 68 578
40% 43 117 268
30% 49 315 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 549
95% 40 47 798
90% 43 68 488
70% 43 68 524
50% 61 95 298
40% 68 105 287
30% 68 107 306
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 20 1744
95% 41 64 498
90% 41 64 523
70% 41 64 563
50% 41 64 634
40% 41 64 665
30% 41 65 656
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 540
95% 40 47 792
90% 40 47 825
70% 40 47 863
50% 43 74 506
40% 43 78 500
30% 43 78 513
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 42 676
95% 37 42 938
90% 37 42 957
70% 37 42 992
50% 37 43 1013
40% 37 43 1040
30% 37 56 787
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.