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An Information Portal to 105339 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Sequence Clustering and Redundancy Reduction Results
3CCR
Sequence Clusters for the Sequence Entities in PDB 3CCR
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 46 555
95% 42 67 471
90% 42 67 496
70% 42 67 534
50% 42 114 243
40% 42 116 268
30% 42 116 290
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 286
95% 43 74 407
90% 43 74 431
70% 43 74 459
50% 43 74 503
40% 44 77 508
30% 44 78 512
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 44 623
95% 43 68 459
90% 43 68 483
70% 43 68 518
50% 43 117 235
40% 43 117 265
30% 49 317 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 285
95% 43 74 406
90% 43 74 430
70% 43 74 458
50% 43 74 502
40% 43 74 538
30% 48 309 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1483
95% 40 47 781
90% 40 47 815
70% 43 68 511
50% 43 115 239
40% 43 115 274
30% 43 115 295
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 283
95% 43 74 404
90% 43 74 428
70% 43 74 456
50% 43 76 483
40% 43 76 517
30% 43 78 509
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 321
95% 43 68 461
90% 43 68 486
70% 43 68 521
50% 43 70 545
40% 43 70 578
30% 43 70 579
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 539
95% 43 68 457
90% 43 68 481
70% 43 68 516
50% 43 68 574
40% 43 70 577
30% 43 71 560
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 324
95% 43 68 463
90% 43 68 488
70% 43 68 523
50% 43 70 548
40% 43 70 582
30% 43 71 563
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 333
95% 43 68 455
90% 43 68 479
70% 43 68 514
50% 43 68 571
40% 43 68 609
30% 43 118 281
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 289
95% 43 74 409
90% 43 74 433
70% 43 74 462
50% 43 76 485
40% 43 78 500
30% 48 272 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 330
95% 43 74 398
90% 43 74 423
70% 43 74 452
50% 43 74 496
40% 43 121 252
30% 43 121 269
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 288
95% 43 74 408
90% 43 74 432
70% 43 74 461
50% 43 124 220
40% 43 124 247
30% 43 124 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 70 308
95% 41 70 441
90% 41 70 462
70% 41 70 496
50% 41 70 549
40% 41 70 583
30% 41 70 581
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 290
95% 43 74 410
90% 43 74 434
70% 43 74 463
50% 43 74 506
40% 43 74 541
30% 43 74 540
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 319
95% 43 68 456
90% 43 68 480
70% 43 68 515
50% 43 68 572
40% 43 70 576
30% 43 71 559
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 326
95% 43 68 465
90% 43 68 490
70% 43 68 525
50% 43 68 579
40% 43 68 616
30% 43 68 609
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 63 350
95% 40 63 512
90% 40 63 536
70% 40 63 574
50% 40 63 649
40% 40 63 676
30% 40 63 677
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 2233
95% 15 17 2818
90% 15 17 2859
70% 15 17 2864
50% 15 17 2845
40% 15 17 2784
30% 15 17 2588
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 328
95% 43 68 467
90% 43 68 492
70% 43 68 527
50% 43 69 562
40% 43 69 601
30% 43 69 598
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 549
95% 43 68 468
90% 43 68 493
70% 43 68 528
50% 43 117 237
40% 43 117 267
30% 43 117 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 325
95% 43 68 464
90% 43 68 489
70% 43 68 524
50% 43 68 578
40% 43 68 615
30% 43 116 291
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1476
95% 43 74 402
90% 43 74 426
70% 43 74 455
50% 43 74 499
40% 43 76 516
30% 43 77 515
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 284
95% 43 74 405
90% 43 74 429
70% 43 74 457
50% 43 74 500
40% 43 121 253
30% 43 121 271
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 318
95% 43 68 454
90% 43 68 478
70% 43 68 513
50% 43 68 569
40% 43 116 269
30% 49 312 53
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 545
95% 40 47 790
90% 43 68 485
70% 43 68 520
50% 61 95 300
40% 68 105 287
30% 68 107 304
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 20 1731
95% 41 64 498
90% 41 64 521
70% 41 64 560
50% 41 64 628
40% 41 64 661
30% 41 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 537
95% 40 47 783
90% 40 47 817
70% 40 47 857
50% 43 74 501
40% 43 78 497
30% 43 78 511
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 42 670
95% 37 42 927
90% 37 42 947
70% 37 42 984
50% 37 43 1007
40% 37 43 1036
30% 37 55 794
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.