POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Sequence Clustering and Redundancy Reduction Results
3CCR
Sequence Clusters for the Sequence Entities in PDB 3CCR
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 573
95% 43 68 468
90% 43 68 491
70% 43 68 530
50% 43 120 244
40% 43 122 262
30% 43 122 281
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 290
95% 43 74 418
90% 43 74 443
70% 43 74 474
50% 43 74 525
40% 44 77 531
30% 44 78 526
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 44 670
95% 43 68 475
90% 43 68 498
70% 43 68 538
50% 43 122 239
40% 43 122 263
30% 53 343 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 289
95% 43 74 417
90% 43 74 442
70% 43 74 473
50% 43 74 523
40% 43 74 565
30% 52 335 51
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1550
95% 40 47 830
90% 40 47 864
70% 43 68 531
50% 43 120 245
40% 43 120 269
30% 43 120 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 287
95% 43 74 415
90% 43 74 440
70% 43 74 470
50% 43 76 499
40% 43 76 540
30% 43 78 524
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 328
95% 43 68 477
90% 43 68 501
70% 43 68 541
50% 43 70 581
40% 43 70 617
30% 43 70 618
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 582
95% 43 68 473
90% 43 68 496
70% 43 68 536
50% 43 68 616
40% 43 70 616
30% 43 71 595
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 330
95% 43 68 479
90% 43 68 503
70% 43 68 543
50% 43 70 584
40% 43 70 621
30% 43 71 598
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 339
95% 43 68 471
90% 43 68 494
70% 43 68 534
50% 43 68 613
40% 43 68 648
30% 43 123 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 293
95% 43 74 420
90% 43 74 445
70% 43 74 477
50% 43 76 500
40% 43 78 521
30% 52 293 68
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 336
95% 43 74 409
90% 43 74 434
70% 43 74 466
50% 43 74 516
40% 43 126 254
30% 43 126 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 292
95% 43 74 419
90% 43 74 444
70% 43 74 476
50% 43 129 222
40% 43 129 248
30% 43 129 264
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 70 315
95% 41 70 456
90% 41 70 477
70% 41 70 513
50% 41 70 585
40% 41 70 622
30% 41 70 620
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 295
95% 43 74 421
90% 43 74 446
70% 43 74 478
50% 43 74 526
40% 43 74 567
30% 43 74 561
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 326
95% 43 68 472
90% 43 68 495
70% 43 68 535
50% 43 68 614
40% 43 70 615
30% 43 71 594
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 332
95% 43 68 481
90% 43 68 505
70% 43 68 545
50% 43 68 620
40% 43 68 653
30% 43 68 648
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 63 356
95% 40 63 526
90% 40 63 555
70% 40 63 606
50% 40 63 683
40% 40 63 713
30% 40 63 713
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 2331
95% 15 17 2936
90% 15 17 2980
70% 15 17 2987
50% 15 17 2950
40% 15 17 2876
30% 15 17 2680
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 334
95% 43 68 483
90% 43 68 507
70% 43 68 547
50% 43 69 603
40% 43 69 640
30% 43 69 635
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 589
95% 43 68 484
90% 43 68 508
70% 43 68 549
50% 43 122 240
40% 43 122 264
30% 43 122 282
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 331
95% 43 68 480
90% 43 68 504
70% 43 68 544
50% 43 68 619
40% 43 68 652
30% 43 121 284
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1544
95% 43 74 413
90% 43 74 438
70% 43 74 469
50% 43 74 518
40% 43 76 537
30% 43 77 531
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 288
95% 43 74 416
90% 43 74 441
70% 43 74 471
50% 43 74 521
40% 43 127 253
30% 43 127 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 325
95% 43 68 470
90% 43 68 493
70% 43 68 533
50% 43 68 611
40% 43 121 267
30% 53 338 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 584
95% 40 47 838
90% 43 68 500
70% 43 68 540
50% 61 95 311
40% 68 105 292
30% 68 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 20 1807
95% 41 64 511
90% 41 64 538
70% 41 64 586
50% 41 64 661
40% 41 64 692
30% 41 65 685
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 577
95% 40 47 832
90% 40 47 866
70% 40 47 897
50% 43 74 522
40% 43 79 508
30% 43 79 516
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 42 706
95% 37 42 982
90% 37 42 1001
70% 37 42 1029
50% 37 43 1044
40% 37 43 1069
30% 37 57 795
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.