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An Information Portal to 107620 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Sequence Clustering and Redundancy Reduction Results
3CCR
Sequence Clusters for the Sequence Entities in PDB 3CCR
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 563
95% 43 68 463
90% 43 68 485
70% 43 68 524
50% 43 118 242
40% 43 120 263
30% 43 120 282
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 289
95% 43 74 414
90% 43 74 438
70% 43 74 468
50% 43 74 515
40% 44 77 520
30% 44 78 518
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 44 655
95% 43 68 471
90% 43 68 492
70% 43 68 532
50% 43 120 236
40% 43 120 264
30% 53 332 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 288
95% 43 74 413
90% 43 74 437
70% 43 74 467
50% 43 74 514
40% 43 74 552
30% 52 324 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1530
95% 40 47 818
90% 40 47 853
70% 43 68 525
50% 43 118 243
40% 43 118 271
30% 43 118 291
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 286
95% 43 74 411
90% 43 74 435
70% 43 74 465
50% 43 76 494
40% 43 76 530
30% 43 78 516
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 323
95% 43 68 473
90% 43 68 495
70% 43 68 535
50% 43 70 571
40% 43 70 602
30% 43 70 602
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 572
95% 43 68 469
90% 43 68 490
70% 43 68 530
50% 43 68 605
40% 43 70 599
30% 43 71 582
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 326
95% 43 68 475
90% 43 68 497
70% 43 68 537
50% 43 70 574
40% 43 70 606
30% 43 71 584
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 335
95% 43 68 467
90% 43 68 488
70% 43 68 528
50% 43 68 602
40% 43 68 634
30% 43 121 279
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 292
95% 43 74 416
90% 43 74 440
70% 43 74 470
50% 43 76 495
40% 43 78 510
30% 52 284 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 332
95% 43 74 406
90% 43 74 430
70% 43 74 461
50% 43 74 507
40% 43 124 253
30% 43 124 269
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 291
95% 43 74 415
90% 43 74 439
70% 43 74 469
50% 43 127 220
40% 43 127 247
30% 43 127 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 70 312
95% 41 70 451
90% 41 70 472
70% 41 70 508
50% 41 70 575
40% 41 70 607
30% 41 70 604
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 293
95% 43 74 417
90% 43 74 441
70% 43 74 471
50% 43 74 516
40% 43 74 555
30% 43 74 550
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 321
95% 43 68 468
90% 43 68 489
70% 43 68 529
50% 43 68 603
40% 43 70 598
30% 43 71 581
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 328
95% 43 68 477
90% 43 68 499
70% 43 68 539
50% 43 68 609
40% 43 68 639
30% 43 68 632
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 63 352
95% 40 63 520
90% 40 63 547
70% 40 63 594
50% 40 63 670
40% 40 63 696
30% 40 63 698
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 2301
95% 15 17 2903
90% 15 17 2944
70% 15 17 2950
50% 15 17 2916
40% 15 17 2841
30% 15 17 2647
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 330
95% 43 68 479
90% 43 68 501
70% 43 68 541
50% 43 69 592
40% 43 69 625
30% 43 69 621
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 579
95% 43 68 480
90% 43 68 502
70% 43 68 542
50% 43 120 237
40% 43 120 266
30% 43 120 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 327
95% 43 68 476
90% 43 68 498
70% 43 68 538
50% 43 68 608
40% 43 68 638
30% 43 119 288
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 23 1523
95% 43 74 409
90% 43 74 433
70% 43 74 464
50% 43 74 509
40% 43 76 528
30% 43 77 522
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 74 287
95% 43 74 412
90% 43 74 436
70% 43 74 466
50% 43 74 512
40% 43 124 255
30% 43 124 271
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 68 320
95% 43 68 466
90% 43 68 487
70% 43 68 527
50% 43 68 601
40% 43 119 269
30% 53 327 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 574
95% 40 47 827
90% 43 68 494
70% 43 68 534
50% 61 95 307
40% 68 105 292
30% 68 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 20 1779
95% 41 64 504
90% 41 64 529
70% 41 64 571
50% 41 64 650
40% 41 64 680
30% 41 65 674
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 47 567
95% 40 47 820
90% 40 47 855
70% 40 47 886
50% 43 74 513
40% 43 78 507
30% 43 78 517
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 42 690
95% 37 42 959
90% 37 42 977
70% 37 42 1009
50% 37 43 1027
40% 37 43 1056
30% 37 56 800
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.