Sequence Similarity Clusters for the Entities in PDB 3CCR

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 47 675
95 % 43 68 525
90 % 43 68 553
70 % 43 68 605
50 % 43 139 227
40 % 43 141 254
30 % 43 141 262
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 313
95 % 43 74 466
90 % 43 74 494
70 % 43 74 539
50 % 43 74 629
40 % 44 77 633
30 % 44 78 630
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 44 749
95 % 43 68 531
90 % 43 68 559
70 % 43 68 612
50 % 43 144 215
40 % 43 144 245
30 % 59 431 32
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 312
95 % 43 74 465
90 % 43 74 492
70 % 43 74 537
50 % 43 74 626
40 % 43 74 670
30 % 58 420 40
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 23 1738
95 % 40 47 953
90 % 40 47 975
70 % 43 68 606
50 % 43 139 228
40 % 43 139 259
30 % 43 139 268
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 310
95 % 43 74 463
90 % 43 74 490
70 % 43 74 534
50 % 43 76 604
40 % 43 76 647
30 % 43 78 627
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 357
95 % 43 68 533
90 % 43 68 562
70 % 43 68 614
50 % 43 70 677
40 % 43 70 719
30 % 43 70 724
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 47 681
95 % 43 68 530
90 % 43 68 558
70 % 43 68 611
50 % 43 68 705
40 % 43 70 716
30 % 43 71 707
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 358
95 % 43 68 534
90 % 43 68 564
70 % 43 68 616
50 % 43 70 679
40 % 43 70 721
30 % 43 71 710
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 67 367
95 % 43 68 528
90 % 43 68 556
70 % 43 68 609
50 % 43 68 702
40 % 43 68 738
30 % 43 143 257
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 317
95 % 43 74 471
90 % 43 74 499
70 % 43 74 544
50 % 43 76 606
40 % 43 78 622
30 % 58 359 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 67 365
95 % 43 74 455
90 % 43 74 483
70 % 43 74 529
50 % 43 74 618
40 % 43 148 237
30 % 43 148 249
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 315
95 % 43 74 469
90 % 43 74 497
70 % 43 74 542
50 % 43 148 213
40 % 43 148 239
30 % 43 148 251
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 70 344
95 % 41 70 510
90 % 41 70 536
70 % 41 70 588
50 % 41 70 680
40 % 41 70 722
30 % 41 70 725
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 318
95 % 43 74 472
90 % 43 74 500
70 % 43 74 545
50 % 43 74 633
40 % 43 74 675
30 % 43 74 672
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 355
95 % 43 68 529
90 % 43 68 557
70 % 43 68 610
50 % 43 68 703
40 % 43 70 715
30 % 43 71 706
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 360
95 % 43 68 536
90 % 43 68 566
70 % 43 68 618
50 % 43 68 707
40 % 43 68 741
30 % 43 68 744
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 63 406
95 % 40 63 604
90 % 40 63 637
70 % 40 63 676
50 % 40 63 758
40 % 40 63 790
30 % 40 63 794
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 2625
95 % 15 17 3313
90 % 15 17 3366
70 % 15 17 3342
50 % 15 17 3261
40 % 15 17 3161
30 % 15 17 2956
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 362
95 % 43 68 538
90 % 43 68 568
70 % 43 68 620
50 % 43 69 693
40 % 43 69 732
30 % 43 69 739
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 47 692
95 % 43 68 540
90 % 43 68 569
70 % 43 68 621
50 % 43 141 222
40 % 43 141 255
30 % 43 141 264
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 359
95 % 43 68 535
90 % 43 68 565
70 % 43 68 617
50 % 43 68 706
40 % 43 68 740
30 % 43 138 270
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 23 1732
95 % 43 74 458
90 % 43 74 486
70 % 43 74 532
50 % 43 74 621
40 % 43 76 646
30 % 43 77 635
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 74 311
95 % 43 74 464
90 % 43 74 491
70 % 43 74 535
50 % 43 74 624
40 % 44 148 238
30 % 44 148 250
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 68 354
95 % 43 68 527
90 % 43 68 555
70 % 43 68 608
50 % 43 68 701
40 % 43 143 247
30 % 59 426 37
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 47 684
95 % 40 47 959
90 % 43 68 561
70 % 43 68 613
50 % 61 96 348
40 % 68 110 309
30 % 68 112 323
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2038
95 % 41 64 580
90 % 41 64 613
70 % 41 64 659
50 % 41 64 745
40 % 41 64 775
30 % 41 65 771
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 47 678
95 % 40 47 957
90 % 40 47 980
70 % 40 47 1021
50 % 43 74 625
40 % 43 79 609
30 % 43 79 616
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 42 794
95 % 37 42 1088
90 % 37 42 1109
70 % 37 42 1148
50 % 37 43 1158
40 % 37 43 1182
30 % 37 67 750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.