Sequence Similarity Clusters for the Entities in PDB 3CCQ

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 47 647
95 % 41 68 516
90 % 41 68 545
70 % 41 68 598
50 % 41 133 242
40 % 41 135 262
30 % 41 135 274
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 311
95 % 41 74 458
90 % 41 74 484
70 % 41 74 529
50 % 41 74 607
40 % 42 77 609
30 % 42 78 603
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 44 734
95 % 41 68 522
90 % 41 68 551
70 % 41 68 605
50 % 41 138 231
40 % 41 138 258
30 % 52 417 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 310
95 % 41 74 457
90 % 41 74 483
70 % 41 74 526
50 % 41 74 603
40 % 41 74 652
30 % 51 406 43
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 23 1709
95 % 38 47 923
90 % 38 47 953
70 % 41 68 599
50 % 41 133 243
40 % 41 133 269
30 % 41 133 283
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 308
95 % 41 74 455
90 % 41 74 481
70 % 41 74 523
50 % 41 76 579
40 % 41 76 624
30 % 41 78 599
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 354
95 % 41 68 525
90 % 41 68 555
70 % 41 68 608
50 % 41 70 662
40 % 41 70 706
30 % 41 70 707
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 47 656
95 % 41 68 521
90 % 41 68 550
70 % 41 68 604
50 % 41 68 696
40 % 41 70 703
30 % 41 71 687
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 355
95 % 41 68 526
90 % 41 68 556
70 % 41 68 609
50 % 41 70 664
40 % 41 70 708
30 % 41 71 690
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 67 364
95 % 41 68 519
90 % 41 68 548
70 % 41 68 602
50 % 41 68 693
40 % 41 68 725
30 % 41 137 271
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 315
95 % 41 74 462
90 % 41 74 488
70 % 41 74 533
50 % 41 76 581
40 % 41 78 597
30 % 51 351 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 67 362
95 % 41 74 448
90 % 41 74 475
70 % 41 74 519
50 % 41 74 596
40 % 41 142 250
30 % 41 142 261
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 313
95 % 41 74 460
90 % 41 74 486
70 % 41 74 531
50 % 41 142 222
40 % 41 142 253
30 % 41 142 264
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 70 340
95 % 39 70 503
90 % 39 70 529
70 % 39 70 580
50 % 39 70 665
40 % 39 70 709
30 % 39 70 709
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 316
95 % 41 74 463
90 % 41 74 489
70 % 41 74 534
50 % 41 74 610
40 % 41 74 659
30 % 41 74 650
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 351
95 % 41 68 520
90 % 41 68 549
70 % 41 68 603
50 % 41 68 694
40 % 41 70 702
30 % 41 71 686
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 357
95 % 41 68 528
90 % 41 68 558
70 % 41 68 611
50 % 41 68 699
40 % 41 68 728
30 % 41 68 729
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 63 390
95 % 38 63 577
90 % 38 63 606
70 % 38 63 653
50 % 38 63 746
40 % 38 63 778
30 % 38 63 780
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 2575
95 % 13 17 3258
90 % 13 17 3310
70 % 13 17 3292
50 % 13 17 3203
40 % 13 17 3111
30 % 13 17 2912
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 359
95 % 41 68 530
90 % 41 68 560
70 % 41 68 613
50 % 41 69 682
40 % 41 69 720
30 % 41 69 723
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 47 668
95 % 41 68 532
90 % 41 68 561
70 % 41 68 614
50 % 41 135 236
40 % 41 135 263
30 % 41 135 276
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 356
95 % 41 68 527
90 % 41 68 557
70 % 41 68 610
50 % 41 68 698
40 % 41 68 727
30 % 41 133 284
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 23 1703
95 % 41 74 451
90 % 41 74 478
70 % 41 74 522
50 % 41 74 598
40 % 41 76 622
30 % 41 77 610
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 74 309
95 % 41 74 456
90 % 41 74 482
70 % 41 74 524
50 % 41 74 601
40 % 42 142 252
30 % 42 142 263
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 68 350
95 % 41 68 518
90 % 41 68 547
70 % 41 68 601
50 % 41 68 692
40 % 41 137 259
30 % 52 412 42
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 47 659
95 % 38 47 932
90 % 41 68 554
70 % 41 68 607
50 % 59 95 347
40 % 66 109 309
30 % 66 111 320
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1993
95 % 39 64 560
90 % 39 64 590
70 % 39 64 638
50 % 39 64 732
40 % 39 64 763
30 % 39 65 757
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 47 652
95 % 38 47 927
90 % 38 47 958
70 % 38 47 1002
50 % 41 74 602
40 % 41 79 583
30 % 41 79 589
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 42 778
95 % 35 42 1068
90 % 35 42 1088
70 % 35 42 1128
50 % 35 43 1143
40 % 35 43 1168
30 % 35 67 734

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.