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An Information Portal to 111558 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Sequence Clustering and Redundancy Reduction Results
3CCQ
Sequence Clusters for the Sequence Entities in PDB 3CCQ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 47 592
95% 41 68 480
90% 41 68 503
70% 41 68 554
50% 41 126 235
40% 41 128 255
30% 41 128 270
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 293
95% 41 74 427
90% 41 74 453
70% 41 74 491
50% 41 74 560
40% 42 77 561
30% 42 78 556
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 44 685
95% 41 68 488
90% 41 68 511
70% 41 68 562
50% 41 128 228
40% 41 128 257
30% 49 366 45
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 292
95% 41 74 426
90% 41 74 452
70% 41 74 488
50% 41 74 557
40% 41 74 597
30% 48 358 50
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 23 1588
95% 38 47 856
90% 38 47 892
70% 41 68 555
50% 41 126 236
40% 41 126 264
30% 41 126 279
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 290
95% 41 74 423
90% 41 74 450
70% 41 74 485
50% 41 76 534
40% 41 76 575
30% 41 78 553
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 331
95% 41 68 490
90% 41 68 514
70% 41 68 565
50% 41 70 612
40% 41 70 649
30% 41 70 646
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 47 601
95% 41 68 486
90% 41 68 509
70% 41 68 560
50% 41 68 644
40% 41 70 646
30% 41 71 628
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 332
95% 41 68 491
90% 41 68 515
70% 41 68 566
50% 41 70 614
40% 41 70 652
30% 41 71 630
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 67 343
95% 41 68 484
90% 41 68 507
70% 41 68 558
50% 41 68 641
40% 41 68 674
30% 41 129 268
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 299
95% 41 74 431
90% 41 74 457
70% 41 74 494
50% 41 76 538
40% 41 78 550
30% 48 310 61
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 67 339
95% 41 74 416
90% 41 74 443
70% 41 74 481
50% 41 74 550
40% 41 132 248
30% 41 132 261
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 295
95% 41 74 429
90% 41 74 455
70% 41 74 492
50% 41 135 218
40% 41 135 242
30% 41 135 256
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 70 319
95% 39 70 466
90% 39 70 489
70% 39 70 538
50% 39 70 615
40% 39 70 653
30% 39 70 648
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 301
95% 41 74 432
90% 41 74 458
70% 41 74 495
50% 41 74 564
40% 41 74 602
30% 41 74 597
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 329
95% 41 68 485
90% 41 68 508
70% 41 68 559
50% 41 68 642
40% 41 70 645
30% 41 71 627
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 334
95% 41 68 493
90% 41 68 517
70% 41 68 568
50% 41 68 648
40% 41 68 678
30% 41 68 675
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 63 366
95% 38 63 539
90% 38 63 569
70% 38 63 621
50% 38 63 709
40% 38 63 736
30% 38 63 735
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 17 2421
95% 13 17 3063
90% 13 17 3109
70% 13 17 3103
50% 13 17 3020
40% 13 17 2935
30% 13 17 2746
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 336
95% 41 68 495
90% 41 68 519
70% 41 68 570
50% 41 69 632
40% 41 69 669
30% 41 69 665
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 47 608
95% 41 68 496
90% 41 68 520
70% 41 68 571
50% 41 128 229
40% 41 128 258
30% 41 128 271
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 333
95% 41 68 492
90% 41 68 516
70% 41 68 567
50% 41 68 647
40% 41 68 677
30% 41 127 275
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 23 1583
95% 41 74 420
90% 41 74 447
70% 41 74 484
50% 41 74 552
40% 41 76 571
30% 41 77 561
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 74 291
95% 41 74 425
90% 41 74 451
70% 41 74 486
50% 41 74 555
40% 42 134 244
30% 42 134 258
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 68 328
95% 41 68 483
90% 41 68 506
70% 41 68 557
50% 41 68 640
40% 41 127 261
30% 49 361 48
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 47 603
95% 38 47 866
90% 41 68 513
70% 41 68 564
50% 59 95 327
40% 66 105 302
30% 66 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 20 1860
95% 39 64 525
90% 39 64 553
70% 39 64 602
50% 39 64 693
40% 39 64 720
30% 39 65 714
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 47 596
95% 38 47 859
90% 38 47 895
70% 38 47 932
50% 41 74 556
40% 41 79 537
30% 41 79 544
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 42 723
95% 35 42 1005
90% 35 42 1025
70% 35 42 1061
50% 35 43 1078
40% 35 43 1100
30% 35 62 746
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.