Sequence Similarity Clusters for the Entities in PDB 3CCM

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 730
95 % 17 68 624
90 % 17 68 651
70 % 17 68 690
50 % 17 163 211
40 % 17 165 228
30 % 17 165 235
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 392
95 % 17 74 552
90 % 17 74 585
70 % 17 74 620
50 % 17 74 669
40 % 18 77 679
30 % 18 78 673
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 44 799
95 % 17 68 632
90 % 17 68 659
70 % 17 68 700
50 % 17 168 203
40 % 17 168 224
30 % 20 495 30
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 391
95 % 17 74 551
90 % 17 74 584
70 % 17 74 617
50 % 17 74 666
40 % 17 74 708
30 % 19 481 35
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 23 1889
95 % 16 47 1023
90 % 16 47 1040
70 % 17 68 691
50 % 17 164 212
40 % 17 164 234
30 % 17 164 239
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 389
95 % 17 74 549
90 % 17 74 582
70 % 17 74 614
50 % 17 76 645
40 % 17 76 689
30 % 17 79 663
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 448
95 % 17 68 633
90 % 17 68 661
70 % 17 68 702
50 % 17 70 720
40 % 17 70 760
30 % 17 70 760
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 736
95 % 17 68 631
90 % 17 68 657
70 % 17 68 698
50 % 17 68 750
40 % 17 72 729
30 % 17 72 727
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 450
95 % 17 68 636
90 % 17 68 663
70 % 17 68 707
50 % 17 70 721
40 % 17 70 761
30 % 17 71 742
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 67 458
95 % 17 68 628
90 % 17 68 654
70 % 17 68 694
50 % 17 68 747
40 % 17 68 780
30 % 17 167 234
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 398
95 % 17 74 558
90 % 17 74 589
70 % 17 74 623
50 % 17 76 647
40 % 17 78 666
30 % 19 396 56
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 67 456
95 % 17 74 543
90 % 17 74 578
70 % 17 74 609
50 % 17 74 659
40 % 17 172 217
30 % 17 172 225
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 397
95 % 17 74 557
90 % 17 74 588
70 % 17 74 622
50 % 17 172 198
40 % 17 172 219
30 % 17 172 227
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 70 430
95 % 17 70 609
90 % 17 70 636
70 % 17 70 670
50 % 17 70 722
40 % 17 70 763
30 % 17 70 762
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 399
95 % 17 74 559
90 % 17 74 590
70 % 17 74 624
50 % 17 74 671
40 % 17 74 712
30 % 17 74 711
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 446
95 % 17 68 630
90 % 17 68 656
70 % 17 68 696
50 % 17 68 748
40 % 17 70 757
30 % 17 71 740
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 452
95 % 17 68 638
90 % 17 68 665
70 % 17 68 709
50 % 17 68 754
40 % 17 68 784
30 % 17 68 785
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 63 490
95 % 17 63 696
90 % 17 63 727
70 % 17 63 773
50 % 17 63 818
40 % 17 63 841
30 % 17 63 838
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 2817
95 % 2 17 3542
90 % 2 17 3586
70 % 2 17 3531
50 % 2 17 3455
40 % 2 17 3338
30 % 2 17 3130
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 453
95 % 17 68 639
90 % 17 68 666
70 % 17 68 711
50 % 17 69 733
40 % 17 69 774
30 % 17 69 776
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 743
95 % 17 68 640
90 % 17 68 667
70 % 17 68 712
50 % 17 165 205
40 % 17 165 229
30 % 17 165 236
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 451
95 % 17 68 637
90 % 17 68 664
70 % 17 68 708
50 % 17 68 753
40 % 17 68 783
30 % 17 161 243
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 23 1881
95 % 17 74 545
90 % 17 74 580
70 % 17 74 613
50 % 17 74 662
40 % 17 76 687
30 % 17 77 681
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 74 390
95 % 17 74 550
90 % 17 74 583
70 % 17 74 615
50 % 17 74 664
40 % 18 172 218
30 % 18 172 226
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 444
95 % 17 68 627
90 % 17 68 653
70 % 17 68 693
50 % 17 68 746
40 % 17 166 227
30 % 20 486 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 737
95 % 16 47 1027
90 % 17 68 660
70 % 17 68 701
50 % 31 105 307
40 % 36 120 278
30 % 36 122 277
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2210
95 % 16 64 672
90 % 16 64 702
70 % 16 64 751
50 % 16 64 800
40 % 16 64 826
30 % 16 65 815
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 734
95 % 16 47 1025
90 % 16 47 1043
70 % 16 47 1084
50 % 17 74 665
40 % 17 79 654
30 % 17 79 666
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 42 846
95 % 16 42 1154
90 % 16 42 1177
70 % 16 42 1226
50 % 17 46 1103
40 % 17 46 1119
30 % 17 84 598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.