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An Information Portal to 108263 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U
Sequence Clustering and Redundancy Reduction Results
3CCM
Sequence Clusters for the Sequence Entities in PDB 3CCM
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 47 568
95% 17 68 464
90% 17 68 487
70% 17 68 525
50% 17 119 241
40% 17 121 262
30% 17 121 279
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 289
95% 17 74 416
90% 17 74 440
70% 17 74 469
50% 17 74 518
40% 18 77 523
30% 18 78 519
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 44 661
95% 17 68 472
90% 17 68 494
70% 17 68 534
50% 17 121 237
40% 17 121 263
30% 20 334 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 288
95% 17 74 415
90% 17 74 439
70% 17 74 468
50% 17 74 515
40% 17 74 556
30% 19 326 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 23 1543
95% 16 47 824
90% 16 47 857
70% 17 68 526
50% 17 119 242
40% 17 119 270
30% 17 119 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 286
95% 17 74 413
90% 17 74 437
70% 17 74 466
50% 17 76 494
40% 17 76 532
30% 17 78 517
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 324
95% 17 68 474
90% 17 68 497
70% 17 68 537
50% 17 70 573
40% 17 70 606
30% 17 70 607
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 47 577
95% 17 68 470
90% 17 68 492
70% 17 68 532
50% 17 68 607
40% 17 70 604
30% 17 71 587
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 326
95% 17 68 476
90% 17 68 499
70% 17 68 539
50% 17 70 577
40% 17 70 611
30% 17 71 590
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 67 335
95% 17 68 468
90% 17 68 490
70% 17 68 530
50% 17 68 604
40% 17 68 638
30% 17 122 278
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 292
95% 17 74 418
90% 17 74 442
70% 17 74 472
50% 17 76 495
40% 17 78 514
30% 19 285 71
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 67 332
95% 17 74 407
90% 17 74 431
70% 17 74 462
50% 17 74 509
40% 17 125 252
30% 17 125 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 291
95% 17 74 417
90% 17 74 441
70% 17 74 471
50% 17 128 220
40% 17 128 247
30% 17 128 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 70 313
95% 17 70 452
90% 17 70 473
70% 17 70 509
50% 17 70 578
40% 17 70 612
30% 17 70 610
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 293
95% 17 74 419
90% 17 74 443
70% 17 74 473
50% 17 74 519
40% 17 74 558
30% 17 74 554
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 322
95% 17 68 469
90% 17 68 491
70% 17 68 531
50% 17 68 605
40% 17 70 603
30% 17 71 586
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 328
95% 17 68 478
90% 17 68 501
70% 17 68 541
50% 17 68 611
40% 17 68 643
30% 17 68 637
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 63 353
95% 17 63 522
90% 17 63 552
70% 17 63 598
50% 17 63 673
40% 17 63 700
30% 17 63 701
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 17 2316
95% 2 17 2919
90% 2 17 2963
70% 2 17 2968
50% 2 17 2931
40% 2 17 2855
30% 2 17 2662
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 330
95% 17 68 480
90% 17 68 503
70% 17 68 543
50% 17 69 595
40% 17 69 628
30% 17 69 625
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 47 584
95% 17 68 481
90% 17 68 504
70% 17 68 544
50% 17 121 238
40% 17 121 264
30% 17 121 281
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 327
95% 17 68 477
90% 17 68 500
70% 17 68 540
50% 17 68 610
40% 17 68 642
30% 17 120 286
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 23 1537
95% 17 74 411
90% 17 74 435
70% 17 74 465
50% 17 74 511
40% 17 76 530
30% 17 77 524
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 74 287
95% 17 74 414
90% 17 74 438
70% 17 74 467
50% 17 74 513
40% 17 126 251
30% 17 126 268
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 68 321
95% 17 68 467
90% 17 68 489
70% 17 68 529
50% 17 68 603
40% 17 120 267
30% 20 329 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 47 579
95% 16 47 833
90% 17 68 496
70% 17 68 536
50% 31 95 309
40% 36 105 292
30% 36 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1799
95% 16 64 507
90% 16 64 534
70% 16 64 579
50% 16 64 652
40% 16 64 684
30% 16 65 677
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 47 572
95% 16 47 826
90% 16 47 859
70% 16 47 891
50% 17 74 514
40% 17 79 502
30% 17 79 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 42 696
95% 16 42 970
90% 16 42 989
70% 16 42 1019
50% 16 43 1036
40% 16 43 1062
30% 16 56 803
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.