Sequence Similarity Clusters for the Entities in PDB 3CCL

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 675
95 % 28 68 525
90 % 28 68 553
70 % 28 68 605
50 % 28 139 227
40 % 28 141 254
30 % 28 141 262
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 313
95 % 28 74 466
90 % 28 74 494
70 % 28 74 539
50 % 28 74 629
40 % 29 77 633
30 % 29 78 630
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 44 749
95 % 28 68 531
90 % 28 68 559
70 % 28 68 612
50 % 28 144 215
40 % 28 144 245
30 % 33 431 32
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 312
95 % 28 74 465
90 % 28 74 492
70 % 28 74 537
50 % 28 74 626
40 % 28 74 670
30 % 32 420 40
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1738
95 % 26 47 953
90 % 26 47 975
70 % 28 68 606
50 % 28 139 228
40 % 28 139 259
30 % 28 139 268
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 310
95 % 28 74 463
90 % 28 74 490
70 % 28 74 534
50 % 28 76 604
40 % 28 76 647
30 % 28 78 627
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 357
95 % 28 68 533
90 % 28 68 562
70 % 28 68 614
50 % 28 70 677
40 % 28 70 719
30 % 28 70 724
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 681
95 % 28 68 530
90 % 28 68 558
70 % 28 68 611
50 % 28 68 705
40 % 28 70 716
30 % 28 71 707
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 358
95 % 28 68 534
90 % 28 68 564
70 % 28 68 616
50 % 28 70 679
40 % 28 70 721
30 % 28 71 710
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 67 367
95 % 28 68 528
90 % 28 68 556
70 % 28 68 609
50 % 28 68 702
40 % 28 68 738
30 % 28 143 257
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 317
95 % 28 74 471
90 % 28 74 499
70 % 28 74 544
50 % 28 76 606
40 % 28 78 622
30 % 32 359 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 67 365
95 % 28 74 455
90 % 28 74 483
70 % 28 74 529
50 % 28 74 618
40 % 28 148 237
30 % 28 148 249
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 315
95 % 28 74 469
90 % 28 74 497
70 % 28 74 542
50 % 28 148 213
40 % 28 148 239
30 % 28 148 251
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 70 344
95 % 27 70 510
90 % 27 70 536
70 % 27 70 588
50 % 27 70 680
40 % 27 70 722
30 % 27 70 725
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 318
95 % 28 74 472
90 % 28 74 500
70 % 28 74 545
50 % 28 74 633
40 % 28 74 675
30 % 28 74 672
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 355
95 % 28 68 529
90 % 28 68 557
70 % 28 68 610
50 % 28 68 703
40 % 28 70 715
30 % 28 71 706
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 360
95 % 28 68 536
90 % 28 68 566
70 % 28 68 618
50 % 28 68 707
40 % 28 68 741
30 % 28 68 744
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 63 406
95 % 27 63 604
90 % 27 63 637
70 % 27 63 676
50 % 27 63 758
40 % 27 63 790
30 % 27 63 794
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 2625
95 % 7 17 3313
90 % 7 17 3366
70 % 7 17 3342
50 % 7 17 3261
40 % 7 17 3161
30 % 7 17 2956
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 362
95 % 28 68 538
90 % 28 68 568
70 % 28 68 620
50 % 28 69 693
40 % 28 69 732
30 % 28 69 739
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 692
95 % 28 68 540
90 % 28 68 569
70 % 28 68 621
50 % 28 141 222
40 % 28 141 255
30 % 28 141 264
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 359
95 % 28 68 535
90 % 28 68 565
70 % 28 68 617
50 % 28 68 706
40 % 28 68 740
30 % 28 138 270
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1732
95 % 28 74 458
90 % 28 74 486
70 % 28 74 532
50 % 28 74 621
40 % 28 76 646
30 % 28 77 635
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 311
95 % 28 74 464
90 % 28 74 491
70 % 28 74 535
50 % 28 74 624
40 % 29 148 238
30 % 29 148 250
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 354
95 % 28 68 527
90 % 28 68 555
70 % 28 68 608
50 % 28 68 701
40 % 28 143 247
30 % 33 426 37
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 684
95 % 26 47 959
90 % 28 68 561
70 % 28 68 613
50 % 42 96 348
40 % 49 110 309
30 % 49 112 323
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2038
95 % 27 64 580
90 % 27 64 613
70 % 27 64 659
50 % 27 64 745
40 % 27 64 775
30 % 27 65 771
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 678
95 % 26 47 957
90 % 26 47 980
70 % 26 47 1021
50 % 28 74 625
40 % 28 79 609
30 % 28 79 616
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 42 794
95 % 24 42 1088
90 % 24 42 1109
70 % 24 42 1148
50 % 24 43 1158
40 % 24 43 1182
30 % 24 67 750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.