POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 46 553
95% 27 67 471
90% 27 67 496
70% 27 67 533
50% 27 114 242
40% 27 116 267
30% 27 116 289
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 285
95% 28 74 406
90% 28 74 431
70% 28 74 459
50% 28 74 502
40% 29 77 507
30% 29 78 511
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 623
95% 28 68 459
90% 28 68 483
70% 28 68 517
50% 28 117 234
40% 28 117 264
30% 30 317 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 284
95% 28 74 405
90% 28 74 430
70% 28 74 458
50% 28 74 501
40% 28 74 538
30% 29 309 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1481
95% 26 47 779
90% 26 47 813
70% 28 68 510
50% 28 115 238
40% 28 115 274
30% 28 115 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 282
95% 28 74 403
90% 28 74 428
70% 28 74 456
50% 28 76 482
40% 28 76 516
30% 28 78 508
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 321
95% 28 68 461
90% 28 68 486
70% 28 68 520
50% 28 70 545
40% 28 70 578
30% 28 70 579
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 537
95% 28 68 457
90% 28 68 481
70% 28 68 515
50% 28 68 574
40% 28 70 577
30% 28 71 560
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 324
95% 28 68 463
90% 28 68 488
70% 28 68 522
50% 28 70 548
40% 28 70 582
30% 28 71 563
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 333
95% 28 68 455
90% 28 68 479
70% 28 68 513
50% 28 68 571
40% 28 68 609
30% 28 118 281
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 288
95% 28 74 408
90% 28 74 433
70% 28 74 462
50% 28 76 484
40% 28 78 499
30% 29 272 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 330
95% 28 74 397
90% 28 74 423
70% 28 74 452
50% 28 74 495
40% 28 121 252
30% 28 121 268
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 287
95% 28 74 407
90% 28 74 432
70% 28 74 461
50% 28 124 220
40% 28 124 247
30% 28 124 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 307
95% 27 70 440
90% 27 70 462
70% 27 70 496
50% 27 70 549
40% 27 70 583
30% 27 70 581
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 289
95% 28 74 409
90% 28 74 434
70% 28 74 463
50% 28 74 505
40% 28 74 541
30% 28 74 540
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 319
95% 28 68 456
90% 28 68 480
70% 28 68 514
50% 28 68 572
40% 28 70 576
30% 28 71 559
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 326
95% 28 68 465
90% 28 68 490
70% 28 68 524
50% 28 68 579
40% 28 68 616
30% 28 68 609
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 349
95% 27 63 512
90% 27 63 536
70% 27 63 574
50% 27 63 650
40% 27 63 677
30% 27 63 677
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2227
95% 7 17 2809
90% 7 17 2851
70% 7 17 2858
50% 7 17 2835
40% 7 17 2774
30% 7 17 2579
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 328
95% 28 68 467
90% 28 68 492
70% 28 68 526
50% 28 69 562
40% 28 69 601
30% 28 69 598
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 547
95% 28 68 468
90% 28 68 493
70% 28 68 527
50% 28 117 236
40% 28 117 266
30% 28 117 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 325
95% 28 68 464
90% 28 68 489
70% 28 68 523
50% 28 68 578
40% 28 68 615
30% 28 116 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1474
95% 28 74 401
90% 28 74 426
70% 28 74 455
50% 28 74 498
40% 28 76 515
30% 28 77 514
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 283
95% 28 74 404
90% 28 74 429
70% 28 74 457
50% 28 74 499
40% 28 121 253
30% 28 121 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 318
95% 28 68 454
90% 28 68 478
70% 28 68 512
50% 28 68 569
40% 28 116 268
30% 30 312 54
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 543
95% 26 47 788
90% 28 68 485
70% 28 68 519
50% 42 95 298
40% 49 105 287
30% 49 107 303
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1727
95% 27 64 498
90% 27 64 521
70% 27 64 560
50% 27 64 629
40% 27 64 662
30% 27 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 535
95% 26 47 781
90% 26 47 815
70% 26 47 855
50% 28 74 500
40% 28 78 496
30% 28 78 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 671
95% 24 42 928
90% 24 42 948
70% 24 42 984
50% 24 43 1007
40% 24 43 1035
30% 24 55 792
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.