Sequence Similarity Clusters for the Entities in PDB 3CCL

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 670
95 % 28 68 521
90 % 28 68 549
70 % 28 68 602
50 % 28 136 235
40 % 28 138 259
30 % 28 138 271
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 312
95 % 28 74 463
90 % 28 74 491
70 % 28 74 536
50 % 28 74 624
40 % 29 77 624
30 % 29 78 618
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 44 742
95 % 28 68 527
90 % 28 68 555
70 % 28 68 609
50 % 28 141 223
40 % 28 141 254
30 % 33 428 34
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 311
95 % 28 74 462
90 % 28 74 489
70 % 28 74 534
50 % 28 74 621
40 % 28 74 664
30 % 32 417 41
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1721
95 % 26 47 946
90 % 26 47 968
70 % 28 68 603
50 % 28 136 236
40 % 28 136 263
30 % 28 136 275
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 309
95 % 28 74 460
90 % 28 74 487
70 % 28 74 531
50 % 28 76 590
40 % 28 76 640
30 % 28 78 615
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 355
95 % 28 68 529
90 % 28 68 558
70 % 28 68 611
50 % 28 70 673
40 % 28 70 715
30 % 28 70 717
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 675
95 % 28 68 526
90 % 28 68 554
70 % 28 68 608
50 % 28 68 702
40 % 28 70 712
30 % 28 71 699
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 356
95 % 28 68 530
90 % 28 68 559
70 % 28 68 612
50 % 28 70 675
40 % 28 70 717
30 % 28 71 702
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 67 365
95 % 28 68 524
90 % 28 68 552
70 % 28 68 606
50 % 28 68 699
40 % 28 68 733
30 % 28 140 266
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 316
95 % 28 74 468
90 % 28 74 496
70 % 28 74 541
50 % 28 76 592
40 % 28 78 613
30 % 32 359 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 67 363
95 % 28 74 452
90 % 28 74 480
70 % 28 74 526
50 % 28 74 614
40 % 28 145 242
30 % 28 145 252
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 314
95 % 28 74 466
90 % 28 74 494
70 % 28 74 539
50 % 28 145 214
40 % 28 145 245
30 % 28 145 256
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 70 341
95 % 27 70 507
90 % 27 70 532
70 % 27 70 583
50 % 27 70 676
40 % 27 70 718
30 % 27 70 719
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 317
95 % 28 74 469
90 % 28 74 497
70 % 28 74 542
50 % 28 74 627
40 % 28 74 670
30 % 28 74 664
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 352
95 % 28 68 525
90 % 28 68 553
70 % 28 68 607
50 % 28 68 700
40 % 28 70 711
30 % 28 71 698
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 358
95 % 28 68 532
90 % 28 68 561
70 % 28 68 614
50 % 28 68 704
40 % 28 68 736
30 % 28 68 736
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 63 392
95 % 27 63 585
90 % 27 63 615
70 % 27 63 661
50 % 27 63 754
40 % 27 63 785
30 % 27 63 790
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 2600
95 % 7 17 3286
90 % 7 17 3339
70 % 7 17 3317
50 % 7 17 3230
40 % 7 17 3137
30 % 7 17 2938
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 360
95 % 28 68 534
90 % 28 68 563
70 % 28 68 616
50 % 28 69 690
40 % 28 69 728
30 % 28 69 731
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 686
95 % 28 68 536
90 % 28 68 564
70 % 28 68 617
50 % 28 138 228
40 % 28 138 261
30 % 28 138 272
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 357
95 % 28 68 531
90 % 28 68 560
70 % 28 68 613
50 % 28 68 703
40 % 28 68 735
30 % 28 136 276
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1715
95 % 28 74 455
90 % 28 74 483
70 % 28 74 529
50 % 28 74 616
40 % 28 76 639
30 % 28 77 624
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 74 310
95 % 28 74 461
90 % 28 74 488
70 % 28 74 532
50 % 28 74 619
40 % 29 145 244
30 % 29 145 255
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 68 351
95 % 28 68 523
90 % 28 68 551
70 % 28 68 605
50 % 28 68 698
40 % 28 140 256
30 % 33 423 38
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 678
95 % 26 47 952
90 % 28 68 557
70 % 28 68 610
50 % 42 96 345
40 % 49 110 307
30 % 49 112 322
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2018
95 % 27 64 567
90 % 27 64 598
70 % 27 64 645
50 % 27 64 740
40 % 27 64 769
30 % 27 65 765
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 673
95 % 26 47 950
90 % 26 47 973
70 % 26 47 1014
50 % 28 74 620
40 % 28 79 601
30 % 28 79 605
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 42 785
95 % 24 42 1081
90 % 24 42 1102
70 % 24 42 1142
50 % 24 43 1152
40 % 24 43 1179
30 % 24 67 743

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.