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An Information Portal to 107049 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 46 576
95% 27 67 479
90% 27 67 501
70% 27 67 541
50% 27 115 249
40% 27 117 268
30% 27 117 287
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 288
95% 28 74 412
90% 28 74 435
70% 28 74 465
50% 28 74 510
40% 29 77 517
30% 29 78 515
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 649
95% 28 68 467
90% 28 68 488
70% 28 68 525
50% 28 118 239
40% 28 118 265
30% 30 325 49
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 287
95% 28 74 411
90% 28 74 434
70% 28 74 464
50% 28 74 509
40% 28 74 549
30% 29 317 53
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1518
95% 26 47 808
90% 26 47 842
70% 28 68 518
50% 28 116 246
40% 28 116 273
30% 28 116 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 285
95% 28 74 409
90% 28 74 432
70% 28 74 462
50% 28 76 489
40% 28 76 528
30% 28 78 513
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 322
95% 28 68 469
90% 28 68 491
70% 28 68 528
50% 28 70 558
40% 28 70 592
30% 28 70 593
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 562
95% 28 68 465
90% 28 68 486
70% 28 68 523
50% 28 68 591
40% 28 70 590
30% 28 71 574
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 325
95% 28 68 471
90% 28 68 493
70% 28 68 530
50% 28 70 561
40% 28 70 596
30% 28 71 576
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 334
95% 28 68 463
90% 28 68 484
70% 28 68 521
50% 28 68 588
40% 28 68 621
30% 28 119 283
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 291
95% 28 74 414
90% 28 74 437
70% 28 74 467
50% 28 76 490
40% 28 78 507
30% 29 279 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 331
95% 28 74 404
90% 28 74 427
70% 28 74 458
50% 28 74 502
40% 28 122 257
30% 28 122 274
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 290
95% 28 74 413
90% 28 74 436
70% 28 74 466
50% 28 125 225
40% 28 125 250
30% 28 125 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 311
95% 27 70 448
90% 27 70 468
70% 27 70 503
50% 27 70 562
40% 27 70 597
30% 27 70 595
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 292
95% 28 74 415
90% 28 74 438
70% 28 74 468
50% 28 74 511
40% 28 74 551
30% 28 74 546
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 320
95% 28 68 464
90% 28 68 485
70% 28 68 522
50% 28 68 589
40% 28 70 589
30% 28 71 573
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 327
95% 28 68 473
90% 28 68 495
70% 28 68 532
50% 28 68 596
40% 28 68 627
30% 28 68 619
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 351
95% 27 63 516
90% 27 63 543
70% 27 63 588
50% 27 63 662
40% 27 63 689
30% 27 63 688
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2286
95% 7 17 2884
90% 7 17 2926
70% 7 17 2930
50% 7 17 2895
40% 7 17 2823
30% 7 17 2623
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 329
95% 28 68 475
90% 28 68 497
70% 28 68 534
50% 28 69 577
40% 28 69 614
30% 28 69 610
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 570
95% 28 68 476
90% 28 68 498
70% 28 68 535
50% 28 118 240
40% 28 118 266
30% 28 118 286
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 326
95% 28 68 472
90% 28 68 494
70% 28 68 531
50% 28 68 595
40% 28 68 626
30% 28 117 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1511
95% 28 74 407
90% 28 74 430
70% 28 74 461
50% 28 74 504
40% 28 76 526
30% 28 77 519
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 286
95% 28 74 410
90% 28 74 433
70% 28 74 463
50% 28 74 507
40% 28 122 260
30% 28 122 276
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 319
95% 28 68 462
90% 28 68 483
70% 28 68 520
50% 28 68 587
40% 28 117 270
30% 30 320 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 564
95% 26 47 817
90% 28 68 490
70% 28 68 527
50% 42 95 303
40% 49 105 291
30% 49 107 307
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1770
95% 27 64 502
90% 27 64 527
70% 27 64 566
50% 27 64 642
40% 27 64 674
30% 27 65 665
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 557
95% 26 47 810
90% 26 47 844
70% 26 47 877
50% 28 74 508
40% 28 78 504
30% 28 78 514
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 686
95% 24 42 952
90% 24 42 969
70% 24 42 1002
50% 24 43 1024
40% 24 43 1050
30% 24 56 794
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.