POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 46 549
95% 27 67 469
90% 27 67 494
70% 27 67 532
50% 27 136 242
40% 27 138 265
30% 27 138 284
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 284
95% 28 74 402
90% 28 74 427
70% 28 74 454
50% 28 74 501
40% 29 77 504
30% 29 78 509
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 617
95% 28 68 457
90% 28 68 481
70% 28 68 516
50% 28 139 233
40% 28 139 261
30% 31 453 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 283
95% 28 74 401
90% 28 74 426
70% 28 74 453
50% 28 74 500
40% 28 74 535
30% 30 445 53
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1469
95% 26 47 776
90% 26 47 808
70% 28 68 509
50% 28 137 237
40% 28 137 270
30% 28 137 291
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 281
95% 28 74 399
90% 28 74 424
70% 28 74 451
50% 28 76 482
40% 28 76 514
30% 28 78 506
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 319
95% 28 68 459
90% 28 68 484
70% 28 68 519
50% 28 70 545
40% 28 70 578
30% 28 70 576
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 532
95% 28 68 455
90% 28 68 479
70% 28 68 514
50% 28 68 574
40% 28 70 577
30% 28 71 558
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 322
95% 28 68 461
90% 28 68 486
70% 28 68 521
50% 28 70 547
40% 28 70 581
30% 28 71 561
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 332
95% 28 68 452
90% 28 68 477
70% 28 68 512
50% 28 68 571
40% 28 68 609
30% 28 140 275
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 287
95% 28 74 404
90% 28 74 429
70% 28 74 457
50% 28 76 484
40% 28 78 496
30% 30 386 69
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 329
95% 28 74 394
90% 28 74 420
70% 28 74 448
50% 28 74 495
40% 28 143 250
30% 28 143 264
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 286
95% 28 74 403
90% 28 74 428
70% 28 74 456
50% 28 146 215
40% 28 146 244
30% 28 146 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 307
95% 27 70 438
90% 27 70 460
70% 27 70 494
50% 27 70 549
40% 27 70 583
30% 27 70 578
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 288
95% 28 74 405
90% 28 74 430
70% 28 74 458
50% 28 74 504
40% 28 74 538
30% 28 74 538
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 317
95% 28 68 453
90% 28 68 478
70% 28 68 513
50% 28 68 572
40% 28 70 576
30% 28 71 557
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 324
95% 28 68 463
90% 28 68 488
70% 28 68 523
50% 28 68 579
40% 28 68 616
30% 28 68 607
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 348
95% 27 63 507
90% 27 63 531
70% 27 63 570
50% 27 63 648
40% 27 63 673
30% 27 63 673
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2216
95% 7 17 2784
90% 7 17 2829
70% 7 17 2833
50% 7 17 2816
40% 7 17 2752
30% 7 17 2562
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 326
95% 28 68 465
90% 28 68 490
70% 28 68 525
50% 28 69 562
40% 28 69 601
30% 28 69 596
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 542
95% 28 68 466
90% 28 68 491
70% 28 68 526
50% 28 139 235
40% 28 139 263
30% 28 139 278
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 323
95% 28 68 462
90% 28 68 487
70% 28 68 522
50% 28 68 578
40% 28 68 615
30% 28 138 286
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1463
95% 28 74 397
90% 28 74 422
70% 28 74 450
50% 28 74 497
40% 28 76 513
30% 28 77 511
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 282
95% 28 74 400
90% 28 74 425
70% 28 74 452
50% 28 74 498
40% 28 143 251
30% 28 143 266
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 316
95% 28 68 451
90% 28 68 476
70% 28 68 511
50% 28 68 569
40% 28 138 266
30% 31 448 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 538
95% 26 47 785
90% 28 68 483
70% 28 68 518
50% 42 97 296
40% 48 106 285
30% 48 108 302
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1716
95% 27 64 494
90% 27 64 517
70% 27 64 557
50% 27 64 627
40% 27 64 659
30% 27 65 647
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 529
95% 26 47 778
90% 26 47 810
70% 26 47 853
50% 28 74 499
40% 28 78 493
30% 28 78 508
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 660
95% 24 42 918
90% 24 42 940
70% 24 42 975
50% 24 43 997
40% 24 43 1025
30% 24 55 789
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.