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An Information Portal to 106082 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 46 559
95% 27 67 475
90% 27 67 499
70% 27 67 537
50% 27 115 244
40% 27 117 267
30% 27 117 286
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 288
95% 28 74 409
90% 28 74 433
70% 28 74 463
50% 28 74 508
40% 29 77 511
30% 29 78 513
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 632
95% 28 68 463
90% 28 68 486
70% 28 68 522
50% 28 118 235
40% 28 118 264
30% 30 324 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 287
95% 28 74 408
90% 28 74 432
70% 28 74 462
50% 28 74 507
40% 28 74 544
30% 29 316 51
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1499
95% 26 47 792
90% 26 47 825
70% 28 68 515
50% 28 116 241
40% 28 116 272
30% 28 116 293
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 285
95% 28 74 406
90% 28 74 430
70% 28 74 460
50% 28 76 486
40% 28 76 520
30% 28 78 511
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 321
95% 28 68 465
90% 28 68 489
70% 28 68 525
50% 28 70 549
40% 28 70 583
30% 28 70 582
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 544
95% 28 68 461
90% 28 68 484
70% 28 68 520
50% 28 68 584
40% 28 70 582
30% 28 71 563
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 324
95% 28 68 467
90% 28 68 491
70% 28 68 527
50% 28 70 552
40% 28 70 587
30% 28 71 565
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 333
95% 28 68 459
90% 28 68 482
70% 28 68 518
50% 28 68 581
40% 28 68 614
30% 28 119 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 291
95% 28 74 411
90% 28 74 435
70% 28 74 466
50% 28 76 488
40% 28 78 503
30% 29 278 69
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 330
95% 28 74 400
90% 28 74 424
70% 28 74 455
50% 28 74 501
40% 28 122 253
30% 28 122 272
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 290
95% 28 74 410
90% 28 74 434
70% 28 74 465
50% 28 125 220
40% 28 125 248
30% 28 125 264
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 309
95% 27 70 445
90% 27 70 465
70% 27 70 500
50% 27 70 553
40% 27 70 588
30% 27 70 584
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 292
95% 28 74 412
90% 28 74 436
70% 28 74 467
50% 28 74 510
40% 28 74 546
30% 28 74 542
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 319
95% 28 68 460
90% 28 68 483
70% 28 68 519
50% 28 68 582
40% 28 70 581
30% 28 71 562
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 326
95% 28 68 469
90% 28 68 493
70% 28 68 529
50% 28 68 589
40% 28 68 621
30% 28 68 614
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 350
95% 27 63 512
90% 27 63 538
70% 27 63 579
50% 27 63 655
40% 27 63 682
30% 27 63 681
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2257
95% 7 17 2848
90% 7 17 2891
70% 7 17 2893
50% 7 17 2872
40% 7 17 2804
30% 7 17 2607
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 328
95% 28 68 471
90% 28 68 495
70% 28 68 531
50% 28 69 568
40% 28 69 606
30% 28 69 601
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 554
95% 28 68 472
90% 28 68 496
70% 28 68 532
50% 28 118 236
40% 28 118 265
30% 28 118 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 325
95% 28 68 468
90% 28 68 492
70% 28 68 528
50% 28 68 588
40% 28 68 620
30% 28 117 289
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1492
95% 28 74 404
90% 28 74 428
70% 28 74 459
50% 28 74 504
40% 28 76 519
30% 28 77 516
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 286
95% 28 74 407
90% 28 74 431
70% 28 74 461
50% 28 74 505
40% 28 122 256
30% 28 122 274
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 318
95% 28 68 458
90% 28 68 481
70% 28 68 517
50% 28 68 579
40% 28 117 269
30% 30 319 48
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 550
95% 26 47 800
90% 28 68 488
70% 28 68 524
50% 42 95 299
40% 49 105 287
30% 49 107 307
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1748
95% 27 64 498
90% 27 64 523
70% 27 64 563
50% 27 64 636
40% 27 64 667
30% 27 65 656
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 541
95% 26 47 794
90% 26 47 827
70% 26 47 865
50% 28 74 506
40% 28 78 500
30% 28 78 512
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 676
95% 24 42 941
90% 24 42 960
70% 24 42 995
50% 24 43 1014
40% 24 43 1041
30% 24 56 786
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.