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An Information Portal to 110790 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 582
95% 28 68 475
90% 28 68 498
70% 28 68 536
50% 28 121 244
40% 28 123 266
30% 28 123 283
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 292
95% 28 74 421
90% 28 74 448
70% 28 74 482
50% 28 74 536
40% 29 77 538
30% 29 78 536
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 680
95% 28 68 483
90% 28 68 506
70% 28 68 546
50% 28 123 238
40% 28 123 267
30% 32 360 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 291
95% 28 74 420
90% 28 74 447
70% 28 74 480
50% 28 74 534
40% 28 74 576
30% 31 352 50
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1574
95% 26 47 848
90% 26 47 882
70% 28 68 539
50% 28 121 245
40% 28 121 272
30% 28 121 289
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 289
95% 28 74 418
90% 28 74 445
70% 28 74 477
50% 28 76 507
40% 28 76 552
30% 28 78 535
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 329
95% 28 68 485
90% 28 68 509
70% 28 68 549
50% 28 70 595
40% 28 70 632
30% 28 70 632
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 591
95% 28 68 481
90% 28 68 504
70% 28 68 544
50% 28 68 626
40% 28 70 631
30% 28 71 611
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 330
95% 28 68 486
90% 28 68 510
70% 28 68 551
50% 28 70 597
40% 28 70 635
30% 28 71 612
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 339
95% 28 68 479
90% 28 68 502
70% 28 68 542
50% 28 68 623
40% 28 68 656
30% 28 124 276
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 298
95% 28 74 424
90% 28 74 451
70% 28 74 485
50% 28 76 510
40% 28 78 528
30% 31 309 61
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 336
95% 28 74 411
90% 28 74 438
70% 28 74 473
50% 28 74 525
40% 28 127 255
30% 28 127 269
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 294
95% 28 74 422
90% 28 74 449
70% 28 74 483
50% 28 130 223
40% 28 130 248
30% 28 130 262
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 317
95% 27 70 463
90% 27 70 485
70% 27 70 520
50% 27 70 598
40% 27 70 636
30% 27 70 634
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 300
95% 28 74 425
90% 28 74 452
70% 28 74 486
50% 28 74 541
40% 28 74 582
30% 28 74 577
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 327
95% 28 68 480
90% 28 68 503
70% 28 68 543
50% 28 68 624
40% 28 70 630
30% 28 71 610
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 332
95% 28 68 488
90% 28 68 512
70% 28 68 553
50% 28 68 629
40% 28 68 660
30% 28 68 657
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 363
95% 27 63 536
90% 27 63 563
70% 27 63 616
50% 27 63 693
40% 27 63 721
30% 27 63 727
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2372
95% 7 17 2993
90% 7 17 3038
70% 7 17 3048
50% 7 17 2998
40% 7 17 2912
30% 7 17 2723
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 334
95% 28 68 490
90% 28 68 514
70% 28 68 555
50% 28 69 615
40% 28 69 650
30% 28 69 647
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 598
95% 28 68 491
90% 28 68 515
70% 28 68 556
50% 28 123 239
40% 28 123 268
30% 28 123 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 331
95% 28 68 487
90% 28 68 511
70% 28 68 552
50% 28 68 628
40% 28 68 659
30% 28 122 288
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1567
95% 28 74 415
90% 28 74 442
70% 28 74 476
50% 28 74 527
40% 28 76 547
30% 28 77 541
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 290
95% 28 74 419
90% 28 74 446
70% 28 74 478
50% 28 74 531
40% 28 128 251
30% 28 128 266
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 326
95% 28 68 478
90% 28 68 501
70% 28 68 541
50% 28 68 622
40% 28 122 270
30% 32 355 49
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 593
95% 26 47 858
90% 28 68 508
70% 28 68 548
50% 42 95 319
40% 49 105 298
30% 49 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1843
95% 27 64 521
90% 27 64 546
70% 27 64 594
50% 27 64 675
40% 27 64 701
30% 27 65 700
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 586
95% 26 47 851
90% 26 47 885
70% 26 47 916
50% 28 74 532
40% 28 79 517
30% 28 79 527
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 717
95% 24 42 998
90% 24 42 1018
70% 24 42 1046
50% 24 43 1065
40% 24 43 1089
30% 24 57 813
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.