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Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Sequence Clustering and Redundancy Reduction Results
3CCL
Sequence Clusters for the Sequence Entities in PDB 3CCL
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 46 510
95% 27 67 462
90% 27 67 485
70% 27 67 518
50% 27 102 332
40% 27 104 347
30% 27 104 358
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 277
95% 28 74 396
90% 28 74 420
70% 28 74 445
50% 28 74 494
40% 29 77 495
30% 29 78 502
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 44 547
95% 28 68 449
90% 28 68 471
70% 28 68 502
50% 28 105 320
40% 28 105 344
30% 29 402 56
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 276
95% 28 74 395
90% 28 74 419
70% 28 74 444
50% 28 74 493
40% 28 74 523
30% 28 394 62
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1374
95% 26 47 731
90% 26 47 758
70% 28 68 495
50% 28 103 330
40% 28 103 353
30% 28 103 364
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 274
95% 28 74 393
90% 28 74 417
70% 28 74 442
50% 28 76 476
40% 28 76 504
30% 28 78 499
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 312
95% 28 68 451
90% 28 68 474
70% 28 68 505
50% 28 70 531
40% 28 70 557
30% 28 70 562
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 499
95% 28 68 447
90% 28 68 469
70% 28 68 500
50% 28 68 556
40% 28 70 556
30% 28 71 547
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 315
95% 28 68 453
90% 28 68 476
70% 28 68 507
50% 28 70 533
40% 28 70 560
30% 28 71 549
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 326
95% 28 68 445
90% 28 68 467
70% 28 68 498
50% 28 68 553
40% 28 68 584
30% 28 106 349
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 281
95% 28 74 398
90% 28 74 422
70% 28 74 447
50% 28 76 477
40% 28 78 486
30% 28 369 73
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 67 323
95% 28 74 388
90% 28 74 413
70% 28 74 439
50% 28 74 488
40% 28 109 318
30% 28 109 332
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 280
95% 28 74 397
90% 28 74 421
70% 28 74 446
50% 28 112 286
40% 28 112 310
30% 28 112 327
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 70 302
95% 27 70 429
90% 27 70 449
70% 27 70 478
50% 27 70 534
40% 27 70 561
30% 27 70 563
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 282
95% 28 74 399
90% 28 74 423
70% 28 74 448
50% 28 74 495
40% 28 74 525
30% 28 74 527
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 310
95% 28 68 446
90% 28 68 468
70% 28 68 499
50% 28 68 554
40% 28 70 555
30% 28 71 546
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 317
95% 28 68 455
90% 28 68 478
70% 28 68 509
50% 28 68 560
40% 28 68 589
30% 28 68 585
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 63 345
95% 27 63 497
90% 27 63 520
70% 27 63 557
50% 27 63 606
40% 27 63 632
30% 27 63 634
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 2109
95% 7 17 2674
90% 7 17 2726
70% 7 17 2742
50% 7 17 2761
40% 7 17 2705
30% 7 17 2518
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 319
95% 28 68 457
90% 28 68 480
70% 28 68 511
50% 28 69 546
40% 28 69 576
30% 28 69 576
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 503
95% 28 68 458
90% 28 68 481
70% 28 68 512
50% 28 105 323
40% 28 105 346
30% 28 105 357
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 316
95% 28 68 454
90% 28 68 477
70% 28 68 508
50% 28 68 559
40% 28 68 588
30% 28 104 361
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 23 1369
95% 28 74 391
90% 28 74 415
70% 28 74 441
50% 28 74 490
40% 28 76 503
30% 28 77 505
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 74 275
95% 28 74 394
90% 28 74 418
70% 28 74 443
50% 28 74 491
40% 28 109 321
30% 28 109 335
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 68 309
95% 28 68 444
90% 28 68 466
70% 28 68 497
50% 28 68 552
40% 28 104 349
30% 29 397 61
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 501
95% 26 47 740
90% 28 68 473
70% 28 68 504
50% 42 97 279
40% 48 106 271
30% 48 108 290
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 20 1607
95% 27 64 485
90% 27 64 508
70% 27 64 542
50% 27 64 593
40% 27 64 621
30% 27 65 614
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 47 497
95% 26 47 733
90% 26 47 760
70% 26 47 797
50% 28 74 492
40% 28 78 483
30% 28 78 501
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 42 579
95% 24 42 834
90% 24 42 859
70% 24 42 892
50% 24 43 923
40% 24 43 949
30% 24 55 733
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.