Sequence Similarity Clusters for the Entities in PDB 3CCJ

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 47 798
95 % 64 68 692
90 % 64 68 721
70 % 64 68 770
50 % 84 175 204
40 % 84 177 224
30 % 84 177 235
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 449
95 % 64 74 620
90 % 64 74 648
70 % 64 74 693
50 % 64 74 747
40 % 65 77 745
30 % 65 78 731
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 44 865
95 % 64 68 698
90 % 64 68 728
70 % 64 68 780
50 % 84 180 201
40 % 188 539 20
30 % 188 539 33
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 447
95 % 64 74 619
90 % 64 74 647
70 % 64 74 690
50 % 64 74 743
40 % 64 74 778
30 % 187 519 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 23 2040
95 % 45 47 1093
90 % 45 47 1112
70 % 64 68 771
50 % 85 176 205
40 % 85 176 228
30 % 85 176 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 445
95 % 64 74 617
90 % 64 74 645
70 % 64 74 687
50 % 64 76 718
40 % 64 76 753
30 % 64 79 717
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 513
95 % 64 68 700
90 % 64 68 731
70 % 64 68 783
50 % 64 70 793
40 % 64 70 830
30 % 64 70 817
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 47 803
95 % 64 68 697
90 % 64 68 727
70 % 64 68 778
50 % 64 68 822
40 % 64 72 805
30 % 64 72 796
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 514
95 % 64 68 702
90 % 64 68 733
70 % 64 68 785
50 % 64 70 794
40 % 64 70 831
30 % 64 71 807
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 67 523
95 % 64 68 695
90 % 64 68 725
70 % 64 68 775
50 % 64 68 819
40 % 64 68 856
30 % 84 179 231
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 452
95 % 64 74 623
90 % 64 74 651
70 % 64 74 697
50 % 64 76 723
40 % 64 78 734
30 % 167 422 59
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 67 521
95 % 64 74 609
90 % 64 74 639
70 % 64 74 683
50 % 64 74 736
40 % 84 184 215
30 % 84 184 225
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 451
95 % 64 74 622
90 % 64 74 650
70 % 64 74 695
50 % 84 183 199
40 % 84 184 217
30 % 84 184 227
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 70 483
95 % 60 70 668
90 % 60 70 694
70 % 60 70 746
50 % 60 70 795
40 % 60 70 832
30 % 60 70 819
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 453
95 % 64 74 624
90 % 64 74 652
70 % 64 74 698
50 % 64 74 748
40 % 164 384 58
30 % 167 410 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 510
95 % 64 68 696
90 % 64 68 726
70 % 64 68 776
50 % 64 68 820
40 % 64 70 828
30 % 64 71 805
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 516
95 % 64 68 704
90 % 64 68 735
70 % 64 68 787
50 % 64 68 827
40 % 64 68 860
30 % 64 68 844
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 63 560
95 % 59 63 779
90 % 59 63 807
70 % 59 63 849
50 % 59 63 898
40 % 59 63 924
30 % 59 63 905
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 3002
95 % 17 17 3744
90 % 17 17 3789
70 % 17 17 3734
50 % 17 17 3654
40 % 17 17 3518
30 % 17 17 3292
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 517
95 % 64 68 705
90 % 64 68 736
70 % 64 68 788
50 % 64 69 809
40 % 64 69 844
30 % 64 69 833
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 47 808
95 % 64 68 706
90 % 64 68 737
70 % 64 68 789
50 % 84 177 203
40 % 84 177 225
30 % 84 177 236
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 515
95 % 64 68 703
90 % 64 68 734
70 % 64 68 786
50 % 64 68 826
40 % 64 68 859
30 % 84 173 244
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 23 2032
95 % 64 74 613
90 % 64 74 643
70 % 64 74 685
50 % 64 74 738
40 % 64 76 751
30 % 65 78 727
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 74 446
95 % 64 74 618
90 % 64 74 646
70 % 64 74 688
50 % 64 74 741
40 % 85 184 216
30 % 85 184 226
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 68 509
95 % 64 68 694
90 % 64 68 723
70 % 64 68 773
50 % 64 68 818
40 % 84 178 222
30 % 188 530 35
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 47 804
95 % 45 47 1097
90 % 64 68 730
70 % 64 68 782
50 % 88 105 351
40 % 97 124 285
30 % 97 126 289
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2370
95 % 61 64 754
90 % 61 64 786
70 % 61 64 826
50 % 61 64 879
40 % 61 64 903
30 % 61 65 877
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 47 801
95 % 45 47 1095
90 % 45 47 1115
70 % 45 47 1153
50 % 64 74 742
40 % 64 79 723
30 % 64 79 719
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 42 913
95 % 41 42 1237
90 % 41 42 1267
70 % 41 42 1296
50 % 43 46 1171
40 % 43 46 1182
30 % 43 85 631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.