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An Information Portal to 109093 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 573
95% 19 68 468
90% 19 68 491
70% 19 68 530
50% 19 120 244
40% 19 122 262
30% 19 122 281
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 290
95% 19 74 418
90% 19 74 443
70% 19 74 474
50% 19 74 525
40% 20 77 531
30% 20 78 526
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 670
95% 19 68 475
90% 19 68 498
70% 19 68 538
50% 19 122 239
40% 19 122 263
30% 22 343 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 289
95% 19 74 417
90% 19 74 442
70% 19 74 473
50% 19 74 523
40% 19 74 565
30% 21 335 51
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1550
95% 18 47 830
90% 18 47 864
70% 19 68 531
50% 19 120 245
40% 19 120 269
30% 19 120 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 287
95% 19 74 415
90% 19 74 440
70% 19 74 470
50% 19 76 499
40% 19 76 540
30% 19 78 524
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 328
95% 19 68 477
90% 19 68 501
70% 19 68 541
50% 19 70 581
40% 19 70 617
30% 19 70 618
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 582
95% 19 68 473
90% 19 68 496
70% 19 68 536
50% 19 68 616
40% 19 70 616
30% 19 71 595
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 330
95% 19 68 479
90% 19 68 503
70% 19 68 543
50% 19 70 584
40% 19 70 621
30% 19 71 598
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 339
95% 19 68 471
90% 19 68 494
70% 19 68 534
50% 19 68 613
40% 19 68 648
30% 19 123 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 293
95% 19 74 420
90% 19 74 445
70% 19 74 477
50% 19 76 500
40% 19 78 521
30% 21 293 68
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 336
95% 19 74 409
90% 19 74 434
70% 19 74 466
50% 19 74 516
40% 19 126 254
30% 19 126 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 292
95% 19 74 419
90% 19 74 444
70% 19 74 476
50% 19 129 222
40% 19 129 248
30% 19 129 264
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 315
95% 19 70 456
90% 19 70 477
70% 19 70 513
50% 19 70 585
40% 19 70 622
30% 19 70 620
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 295
95% 19 74 421
90% 19 74 446
70% 19 74 478
50% 19 74 526
40% 19 74 567
30% 19 74 561
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 472
90% 19 68 495
70% 19 68 535
50% 19 68 614
40% 19 70 615
30% 19 71 594
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 332
95% 19 68 481
90% 19 68 505
70% 19 68 545
50% 19 68 620
40% 19 68 653
30% 19 68 648
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 356
95% 19 63 526
90% 19 63 555
70% 19 63 606
50% 19 63 683
40% 19 63 713
30% 19 63 713
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2331
95% 3 17 2936
90% 3 17 2980
70% 3 17 2987
50% 3 17 2950
40% 3 17 2876
30% 3 17 2680
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 334
95% 19 68 483
90% 19 68 507
70% 19 68 547
50% 19 69 603
40% 19 69 640
30% 19 69 635
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 589
95% 19 68 484
90% 19 68 508
70% 19 68 549
50% 19 122 240
40% 19 122 264
30% 19 122 282
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 331
95% 19 68 480
90% 19 68 504
70% 19 68 544
50% 19 68 619
40% 19 68 652
30% 19 121 284
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1544
95% 19 74 413
90% 19 74 438
70% 19 74 469
50% 19 74 518
40% 19 76 537
30% 19 77 531
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 288
95% 19 74 416
90% 19 74 441
70% 19 74 471
50% 19 74 521
40% 19 127 253
30% 19 127 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 325
95% 19 68 470
90% 19 68 493
70% 19 68 533
50% 19 68 611
40% 19 121 267
30% 22 338 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 584
95% 18 47 838
90% 19 68 500
70% 19 68 540
50% 33 95 311
40% 38 105 292
30% 38 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1807
95% 18 64 511
90% 18 64 538
70% 18 64 586
50% 18 64 661
40% 18 64 692
30% 18 65 685
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 577
95% 18 47 832
90% 18 47 866
70% 18 47 897
50% 19 74 522
40% 19 79 508
30% 19 79 516
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 706
95% 18 42 982
90% 18 42 1001
70% 18 42 1029
50% 18 43 1044
40% 18 43 1069
30% 18 57 795
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.