POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 46 576
95% 19 67 479
90% 19 67 501
70% 19 67 541
50% 19 115 249
40% 19 117 268
30% 19 117 287
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 288
95% 19 74 412
90% 19 74 435
70% 19 74 465
50% 19 74 510
40% 20 77 517
30% 20 78 515
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 649
95% 19 68 467
90% 19 68 488
70% 19 68 525
50% 19 118 239
40% 19 118 265
30% 20 325 49
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 287
95% 19 74 411
90% 19 74 434
70% 19 74 464
50% 19 74 509
40% 19 74 549
30% 19 317 53
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1518
95% 18 47 808
90% 18 47 842
70% 19 68 518
50% 19 116 246
40% 19 116 273
30% 19 116 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 285
95% 19 74 409
90% 19 74 432
70% 19 74 462
50% 19 76 489
40% 19 76 528
30% 19 78 513
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 322
95% 19 68 469
90% 19 68 491
70% 19 68 528
50% 19 70 558
40% 19 70 592
30% 19 70 593
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 562
95% 19 68 465
90% 19 68 486
70% 19 68 523
50% 19 68 591
40% 19 70 590
30% 19 71 574
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 325
95% 19 68 471
90% 19 68 493
70% 19 68 530
50% 19 70 561
40% 19 70 596
30% 19 71 576
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 334
95% 19 68 463
90% 19 68 484
70% 19 68 521
50% 19 68 588
40% 19 68 621
30% 19 119 283
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 291
95% 19 74 414
90% 19 74 437
70% 19 74 467
50% 19 76 490
40% 19 78 507
30% 19 279 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 331
95% 19 74 404
90% 19 74 427
70% 19 74 458
50% 19 74 502
40% 19 122 257
30% 19 122 274
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 290
95% 19 74 413
90% 19 74 436
70% 19 74 466
50% 19 125 225
40% 19 125 250
30% 19 125 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 311
95% 19 70 448
90% 19 70 468
70% 19 70 503
50% 19 70 562
40% 19 70 597
30% 19 70 595
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 292
95% 19 74 415
90% 19 74 438
70% 19 74 468
50% 19 74 511
40% 19 74 551
30% 19 74 546
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 320
95% 19 68 464
90% 19 68 485
70% 19 68 522
50% 19 68 589
40% 19 70 589
30% 19 71 573
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 327
95% 19 68 473
90% 19 68 495
70% 19 68 532
50% 19 68 596
40% 19 68 627
30% 19 68 619
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 351
95% 19 63 516
90% 19 63 543
70% 19 63 588
50% 19 63 662
40% 19 63 689
30% 19 63 688
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2286
95% 3 17 2884
90% 3 17 2926
70% 3 17 2930
50% 3 17 2895
40% 3 17 2823
30% 3 17 2623
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 329
95% 19 68 475
90% 19 68 497
70% 19 68 534
50% 19 69 577
40% 19 69 614
30% 19 69 610
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 570
95% 19 68 476
90% 19 68 498
70% 19 68 535
50% 19 118 240
40% 19 118 266
30% 19 118 286
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 472
90% 19 68 494
70% 19 68 531
50% 19 68 595
40% 19 68 626
30% 19 117 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1511
95% 19 74 407
90% 19 74 430
70% 19 74 461
50% 19 74 504
40% 19 76 526
30% 19 77 519
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 286
95% 19 74 410
90% 19 74 433
70% 19 74 463
50% 19 74 507
40% 19 122 260
30% 19 122 276
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 319
95% 19 68 462
90% 19 68 483
70% 19 68 520
50% 19 68 587
40% 19 117 270
30% 20 320 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 564
95% 18 47 817
90% 19 68 490
70% 19 68 527
50% 33 95 303
40% 38 105 291
30% 38 107 307
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1770
95% 18 64 502
90% 18 64 527
70% 18 64 566
50% 18 64 642
40% 18 64 674
30% 18 65 665
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 557
95% 18 47 810
90% 18 47 844
70% 18 47 877
50% 19 74 508
40% 19 78 504
30% 19 78 514
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 686
95% 18 42 952
90% 18 42 969
70% 18 42 1002
50% 18 43 1024
40% 18 43 1050
30% 18 56 794
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.