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Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 46 511
95% 19 67 463
90% 19 67 486
70% 19 67 520
50% 19 102 334
40% 19 104 348
30% 19 104 359
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 279
95% 19 74 397
90% 19 74 421
70% 19 74 446
50% 19 74 495
40% 20 77 495
30% 20 78 503
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 549
95% 19 68 450
90% 19 68 472
70% 19 68 504
50% 19 105 321
40% 19 105 344
30% 20 407 56
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 278
95% 19 74 396
90% 19 74 420
70% 19 74 445
50% 19 74 494
40% 19 74 524
30% 19 399 62
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1379
95% 18 47 734
90% 18 47 761
70% 19 68 497
50% 19 103 332
40% 19 103 355
30% 19 103 366
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 276
95% 19 74 394
90% 19 74 418
70% 19 74 443
50% 19 76 477
40% 19 76 505
30% 19 78 500
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 315
95% 19 68 452
90% 19 68 475
70% 19 68 507
50% 19 70 532
40% 19 70 558
30% 19 70 565
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 500
95% 19 68 448
90% 19 68 470
70% 19 68 502
50% 19 68 556
40% 19 70 557
30% 19 71 550
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 318
95% 19 68 454
90% 19 68 477
70% 19 68 509
50% 19 70 534
40% 19 70 561
30% 19 71 552
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 328
95% 19 68 446
90% 19 68 468
70% 19 68 500
50% 19 68 553
40% 19 68 584
30% 19 106 350
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 283
95% 19 74 399
90% 19 74 423
70% 19 74 448
50% 19 76 478
40% 19 78 487
30% 19 374 73
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 325
95% 19 74 389
90% 19 74 414
70% 19 74 440
50% 19 74 489
40% 19 109 318
30% 19 109 332
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 282
95% 19 74 398
90% 19 74 422
70% 19 74 447
50% 19 112 286
40% 19 112 311
30% 19 112 327
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 303
95% 19 70 431
90% 19 70 451
70% 19 70 482
50% 19 70 535
40% 19 70 562
30% 19 70 566
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 284
95% 19 74 400
90% 19 74 424
70% 19 74 449
50% 19 74 496
40% 19 74 526
30% 19 74 529
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 313
95% 19 68 447
90% 19 68 469
70% 19 68 501
50% 19 68 554
40% 19 70 556
30% 19 71 549
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 320
95% 19 68 456
90% 19 68 479
70% 19 68 511
50% 19 68 560
40% 19 68 589
30% 19 68 587
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 346
95% 19 63 500
90% 19 63 522
70% 19 63 560
50% 19 63 607
40% 19 63 634
30% 19 63 638
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2115
95% 3 17 2686
90% 3 17 2738
70% 3 17 2758
50% 3 17 2775
40% 3 17 2717
30% 3 17 2527
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 322
95% 19 68 458
90% 19 68 481
70% 19 68 513
50% 19 69 547
40% 19 69 577
30% 19 69 579
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 504
95% 19 68 459
90% 19 68 482
70% 19 68 514
50% 19 105 324
40% 19 105 346
30% 19 105 357
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 319
95% 19 68 455
90% 19 68 478
70% 19 68 510
50% 19 68 559
40% 19 68 588
30% 19 104 362
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1374
95% 19 74 392
90% 19 74 416
70% 19 74 442
50% 19 74 491
40% 19 76 504
30% 19 77 506
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 277
95% 19 74 395
90% 19 74 419
70% 19 74 444
50% 19 74 492
40% 19 109 321
30% 19 109 335
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 312
95% 19 68 445
90% 19 68 467
70% 19 68 499
50% 19 68 552
40% 19 104 350
30% 20 402 60
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 502
95% 18 47 742
90% 19 68 474
70% 19 68 506
50% 33 97 279
40% 37 106 272
30% 37 108 292
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1618
95% 18 64 488
90% 18 64 510
70% 18 64 545
50% 18 64 594
40% 18 64 623
30% 18 65 619
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 498
95% 18 47 736
90% 18 47 763
70% 18 47 798
50% 19 74 493
40% 19 78 484
30% 19 78 502
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 583
95% 18 42 838
90% 18 42 863
70% 18 42 895
50% 18 43 925
40% 18 43 952
30% 18 55 738
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.