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Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 582
95% 19 68 475
90% 19 68 498
70% 19 68 536
50% 19 121 244
40% 19 123 266
30% 19 123 283
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 292
95% 19 74 421
90% 19 74 448
70% 19 74 482
50% 19 74 536
40% 20 77 538
30% 20 78 536
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 680
95% 19 68 483
90% 19 68 506
70% 19 68 546
50% 19 123 238
40% 19 123 267
30% 22 360 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 291
95% 19 74 420
90% 19 74 447
70% 19 74 480
50% 19 74 534
40% 19 74 576
30% 21 352 50
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1574
95% 18 47 848
90% 18 47 882
70% 19 68 539
50% 19 121 245
40% 19 121 272
30% 19 121 289
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 289
95% 19 74 418
90% 19 74 445
70% 19 74 477
50% 19 76 507
40% 19 76 552
30% 19 78 535
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 329
95% 19 68 485
90% 19 68 509
70% 19 68 549
50% 19 70 595
40% 19 70 632
30% 19 70 632
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 591
95% 19 68 481
90% 19 68 504
70% 19 68 544
50% 19 68 626
40% 19 70 631
30% 19 71 611
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 330
95% 19 68 486
90% 19 68 510
70% 19 68 551
50% 19 70 597
40% 19 70 635
30% 19 71 612
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 339
95% 19 68 479
90% 19 68 502
70% 19 68 542
50% 19 68 623
40% 19 68 656
30% 19 124 276
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 298
95% 19 74 424
90% 19 74 451
70% 19 74 485
50% 19 76 510
40% 19 78 528
30% 21 309 61
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 336
95% 19 74 411
90% 19 74 438
70% 19 74 473
50% 19 74 525
40% 19 127 255
30% 19 127 269
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 294
95% 19 74 422
90% 19 74 449
70% 19 74 483
50% 19 130 223
40% 19 130 248
30% 19 130 262
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 317
95% 19 70 463
90% 19 70 485
70% 19 70 520
50% 19 70 598
40% 19 70 636
30% 19 70 634
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 300
95% 19 74 425
90% 19 74 452
70% 19 74 486
50% 19 74 541
40% 19 74 582
30% 19 74 577
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 327
95% 19 68 480
90% 19 68 503
70% 19 68 543
50% 19 68 624
40% 19 70 630
30% 19 71 610
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 332
95% 19 68 488
90% 19 68 512
70% 19 68 553
50% 19 68 629
40% 19 68 660
30% 19 68 657
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 363
95% 19 63 536
90% 19 63 563
70% 19 63 616
50% 19 63 693
40% 19 63 721
30% 19 63 727
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2372
95% 3 17 2993
90% 3 17 3038
70% 3 17 3048
50% 3 17 2998
40% 3 17 2912
30% 3 17 2723
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 334
95% 19 68 490
90% 19 68 514
70% 19 68 555
50% 19 69 615
40% 19 69 650
30% 19 69 647
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 598
95% 19 68 491
90% 19 68 515
70% 19 68 556
50% 19 123 239
40% 19 123 268
30% 19 123 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 331
95% 19 68 487
90% 19 68 511
70% 19 68 552
50% 19 68 628
40% 19 68 659
30% 19 122 288
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1567
95% 19 74 415
90% 19 74 442
70% 19 74 476
50% 19 74 527
40% 19 76 547
30% 19 77 541
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 290
95% 19 74 419
90% 19 74 446
70% 19 74 478
50% 19 74 531
40% 19 128 251
30% 19 128 266
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 478
90% 19 68 501
70% 19 68 541
50% 19 68 622
40% 19 122 270
30% 22 355 49
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 593
95% 18 47 858
90% 19 68 508
70% 19 68 548
50% 33 95 319
40% 38 105 298
30% 38 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1843
95% 18 64 521
90% 18 64 546
70% 18 64 594
50% 18 64 675
40% 18 64 701
30% 18 65 700
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 586
95% 18 47 851
90% 18 47 885
70% 18 47 916
50% 19 74 532
40% 19 79 517
30% 19 79 527
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 717
95% 18 42 998
90% 18 42 1018
70% 18 42 1046
50% 18 43 1065
40% 18 43 1089
30% 18 57 813
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.