Sequence Similarity Clusters for the Entities in PDB 3CCJ

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 678
95 % 19 68 531
90 % 19 68 558
70 % 19 68 608
50 % 19 140 230
40 % 19 142 255
30 % 19 142 261
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 319
95 % 19 74 472
90 % 19 74 501
70 % 19 74 547
50 % 19 74 634
40 % 20 77 640
30 % 20 78 640
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 44 754
95 % 19 68 537
90 % 19 68 564
70 % 19 68 615
50 % 19 145 219
40 % 19 145 247
30 % 23 439 33
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 318
95 % 19 74 471
90 % 19 74 499
70 % 19 74 544
50 % 19 74 631
40 % 19 74 674
30 % 22 428 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 23 1754
95 % 18 47 960
90 % 18 47 983
70 % 19 68 609
50 % 19 140 231
40 % 19 140 259
30 % 19 140 269
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 315
95 % 19 74 468
90 % 19 74 496
70 % 19 74 540
50 % 19 76 609
40 % 19 76 652
30 % 19 78 637
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 361
95 % 19 68 538
90 % 19 68 566
70 % 19 68 617
50 % 19 70 678
40 % 19 70 721
30 % 19 70 727
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 684
95 % 19 68 536
90 % 19 68 563
70 % 19 68 614
50 % 19 68 706
40 % 19 70 719
30 % 19 71 710
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 362
95 % 19 68 539
90 % 19 68 568
70 % 19 68 619
50 % 19 70 680
40 % 19 70 723
30 % 19 71 713
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 67 371
95 % 19 68 534
90 % 19 68 561
70 % 19 68 612
50 % 19 68 703
40 % 19 68 740
30 % 19 144 257
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 323
95 % 19 74 476
90 % 19 74 505
70 % 19 74 551
50 % 19 76 611
40 % 19 78 628
30 % 22 366 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 67 369
95 % 19 74 461
90 % 19 74 490
70 % 19 74 536
50 % 19 74 622
40 % 19 149 235
30 % 19 149 247
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 321
95 % 19 74 474
90 % 19 74 503
70 % 19 74 549
50 % 19 149 215
40 % 19 149 240
30 % 19 149 252
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 70 345
95 % 19 70 514
90 % 19 70 540
70 % 19 70 590
50 % 19 70 681
40 % 19 70 724
30 % 19 70 728
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 324
95 % 19 74 477
90 % 19 74 506
70 % 19 74 552
50 % 19 74 637
40 % 19 74 679
30 % 19 74 677
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 359
95 % 19 68 535
90 % 19 68 562
70 % 19 68 613
50 % 19 68 704
40 % 19 70 718
30 % 19 71 709
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 364
95 % 19 68 541
90 % 19 68 570
70 % 19 68 621
50 % 19 68 708
40 % 19 68 744
30 % 19 68 747
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 63 410
95 % 19 63 611
90 % 19 63 642
70 % 19 63 679
50 % 19 63 761
40 % 19 63 796
30 % 19 63 799
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 2644
95 % 3 17 3332
90 % 3 17 3383
70 % 3 17 3357
50 % 3 17 3280
40 % 3 17 3174
30 % 3 17 2970
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 365
95 % 19 68 542
90 % 19 68 571
70 % 19 68 622
50 % 19 69 694
40 % 19 69 735
30 % 19 69 741
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 695
95 % 19 68 544
90 % 19 68 572
70 % 19 68 623
50 % 19 142 226
40 % 19 142 256
30 % 19 142 263
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 363
95 % 19 68 540
90 % 19 68 569
70 % 19 68 620
50 % 19 68 707
40 % 19 68 743
30 % 19 139 271
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 23 1748
95 % 19 74 464
90 % 19 74 493
70 % 19 74 539
50 % 19 74 625
40 % 19 76 651
30 % 19 77 643
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 74 317
95 % 19 74 470
90 % 19 74 498
70 % 19 74 542
50 % 19 74 629
40 % 20 150 233
30 % 20 150 246
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 68 358
95 % 19 68 533
90 % 19 68 560
70 % 19 68 611
50 % 19 68 702
40 % 19 144 248
30 % 23 434 36
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 687
95 % 18 47 966
90 % 19 68 565
70 % 19 68 616
50 % 33 97 347
40 % 38 111 309
30 % 38 113 323
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2059
95 % 18 64 586
90 % 18 64 617
70 % 18 64 661
50 % 18 64 749
40 % 18 64 780
30 % 18 65 776
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 681
95 % 18 47 964
90 % 18 47 988
70 % 18 47 1029
50 % 19 74 630
40 % 19 79 615
30 % 19 79 625
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 798
95 % 18 42 1099
90 % 18 42 1120
70 % 18 42 1156
50 % 18 43 1166
40 % 18 43 1187
30 % 18 67 755

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.