POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 568
95% 19 68 464
90% 19 68 487
70% 19 68 525
50% 19 119 241
40% 19 121 262
30% 19 121 279
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 289
95% 19 74 416
90% 19 74 440
70% 19 74 469
50% 19 74 518
40% 20 77 523
30% 20 78 519
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 661
95% 19 68 472
90% 19 68 494
70% 19 68 534
50% 19 121 237
40% 19 121 263
30% 22 334 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 288
95% 19 74 415
90% 19 74 439
70% 19 74 468
50% 19 74 515
40% 19 74 556
30% 21 326 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1543
95% 18 47 824
90% 18 47 857
70% 19 68 526
50% 19 119 242
40% 19 119 270
30% 19 119 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 286
95% 19 74 413
90% 19 74 437
70% 19 74 466
50% 19 76 494
40% 19 76 532
30% 19 78 517
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 324
95% 19 68 474
90% 19 68 497
70% 19 68 537
50% 19 70 573
40% 19 70 606
30% 19 70 607
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 577
95% 19 68 470
90% 19 68 492
70% 19 68 532
50% 19 68 607
40% 19 70 604
30% 19 71 587
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 476
90% 19 68 499
70% 19 68 539
50% 19 70 577
40% 19 70 611
30% 19 71 590
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 335
95% 19 68 468
90% 19 68 490
70% 19 68 530
50% 19 68 604
40% 19 68 638
30% 19 122 278
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 292
95% 19 74 418
90% 19 74 442
70% 19 74 472
50% 19 76 495
40% 19 78 514
30% 21 285 71
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 332
95% 19 74 407
90% 19 74 431
70% 19 74 462
50% 19 74 509
40% 19 125 252
30% 19 125 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 291
95% 19 74 417
90% 19 74 441
70% 19 74 471
50% 19 128 220
40% 19 128 247
30% 19 128 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 313
95% 19 70 452
90% 19 70 473
70% 19 70 509
50% 19 70 578
40% 19 70 612
30% 19 70 610
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 293
95% 19 74 419
90% 19 74 443
70% 19 74 473
50% 19 74 519
40% 19 74 558
30% 19 74 554
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 322
95% 19 68 469
90% 19 68 491
70% 19 68 531
50% 19 68 605
40% 19 70 603
30% 19 71 586
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 328
95% 19 68 478
90% 19 68 501
70% 19 68 541
50% 19 68 611
40% 19 68 643
30% 19 68 637
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 353
95% 19 63 522
90% 19 63 552
70% 19 63 598
50% 19 63 673
40% 19 63 700
30% 19 63 701
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2316
95% 3 17 2919
90% 3 17 2963
70% 3 17 2968
50% 3 17 2931
40% 3 17 2855
30% 3 17 2662
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 330
95% 19 68 480
90% 19 68 503
70% 19 68 543
50% 19 69 595
40% 19 69 628
30% 19 69 625
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 584
95% 19 68 481
90% 19 68 504
70% 19 68 544
50% 19 121 238
40% 19 121 264
30% 19 121 281
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 327
95% 19 68 477
90% 19 68 500
70% 19 68 540
50% 19 68 610
40% 19 68 642
30% 19 120 286
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1537
95% 19 74 411
90% 19 74 435
70% 19 74 465
50% 19 74 511
40% 19 76 530
30% 19 77 524
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 287
95% 19 74 414
90% 19 74 438
70% 19 74 467
50% 19 74 513
40% 19 126 251
30% 19 126 268
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 321
95% 19 68 467
90% 19 68 489
70% 19 68 529
50% 19 68 603
40% 19 120 267
30% 22 329 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 579
95% 18 47 833
90% 19 68 496
70% 19 68 536
50% 33 95 309
40% 38 105 292
30% 38 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1799
95% 18 64 507
90% 18 64 534
70% 18 64 579
50% 18 64 652
40% 18 64 684
30% 18 65 677
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 572
95% 18 47 826
90% 18 47 859
70% 18 47 891
50% 19 74 514
40% 19 79 502
30% 19 79 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 696
95% 18 42 970
90% 18 42 989
70% 18 42 1019
50% 18 43 1036
40% 18 43 1062
30% 18 56 803
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.