POP-OUT | CLOSE

An Information Portal to 105906 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 46 558
95% 19 67 475
90% 19 67 499
70% 19 67 537
50% 19 115 243
40% 19 117 266
30% 19 117 286
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 287
95% 19 74 409
90% 19 74 433
70% 19 74 462
50% 19 74 508
40% 20 77 511
30% 20 78 514
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 631
95% 19 68 463
90% 19 68 486
70% 19 68 522
50% 19 118 234
40% 19 118 263
30% 20 320 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 286
95% 19 74 408
90% 19 74 432
70% 19 74 461
50% 19 74 507
40% 19 74 544
30% 19 312 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1496
95% 18 47 790
90% 18 47 823
70% 19 68 515
50% 19 116 240
40% 19 116 271
30% 19 116 293
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 284
95% 19 74 406
90% 19 74 430
70% 19 74 459
50% 19 76 486
40% 19 76 520
30% 19 78 512
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 321
95% 19 68 465
90% 19 68 489
70% 19 68 525
50% 19 70 549
40% 19 70 583
30% 19 70 583
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 543
95% 19 68 461
90% 19 68 484
70% 19 68 520
50% 19 68 583
40% 19 70 582
30% 19 71 564
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 324
95% 19 68 467
90% 19 68 491
70% 19 68 527
50% 19 70 552
40% 19 70 587
30% 19 71 566
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 333
95% 19 68 459
90% 19 68 482
70% 19 68 518
50% 19 68 580
40% 19 68 614
30% 19 119 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 290
95% 19 74 411
90% 19 74 435
70% 19 74 465
50% 19 76 488
40% 19 78 503
30% 19 274 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 330
95% 19 74 400
90% 19 74 424
70% 19 74 454
50% 19 74 501
40% 19 122 253
30% 19 122 271
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 289
95% 19 74 410
90% 19 74 434
70% 19 74 464
50% 19 125 220
40% 19 125 248
30% 19 125 263
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 308
95% 19 70 445
90% 19 70 465
70% 19 70 500
50% 19 70 553
40% 19 70 588
30% 19 70 585
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 291
95% 19 74 412
90% 19 74 436
70% 19 74 466
50% 19 74 510
40% 19 74 546
30% 19 74 543
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 319
95% 19 68 460
90% 19 68 483
70% 19 68 519
50% 19 68 581
40% 19 70 581
30% 19 71 563
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 469
90% 19 68 493
70% 19 68 529
50% 19 68 588
40% 19 68 621
30% 19 68 614
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 350
95% 19 63 512
90% 19 63 538
70% 19 63 579
50% 19 63 653
40% 19 63 679
30% 19 63 681
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2251
95% 3 17 2842
90% 3 17 2885
70% 3 17 2888
50% 3 17 2865
40% 3 17 2797
30% 3 17 2601
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 328
95% 19 68 471
90% 19 68 495
70% 19 68 531
50% 19 69 567
40% 19 69 606
30% 19 69 601
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 553
95% 19 68 472
90% 19 68 496
70% 19 68 532
50% 19 118 235
40% 19 118 264
30% 19 118 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 325
95% 19 68 468
90% 19 68 492
70% 19 68 528
50% 19 68 587
40% 19 68 620
30% 19 117 289
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1489
95% 19 74 404
90% 19 74 428
70% 19 74 458
50% 19 74 504
40% 19 76 519
30% 19 77 517
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 285
95% 19 74 407
90% 19 74 431
70% 19 74 460
50% 19 74 505
40% 19 122 256
30% 19 122 273
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 318
95% 19 68 458
90% 19 68 481
70% 19 68 517
50% 19 68 578
40% 19 117 268
30% 20 315 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 549
95% 18 47 798
90% 19 68 488
70% 19 68 524
50% 33 95 298
40% 38 105 287
30% 38 107 306
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1744
95% 18 64 498
90% 18 64 523
70% 18 64 563
50% 18 64 634
40% 18 64 665
30% 18 65 656
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 540
95% 18 47 792
90% 18 47 825
70% 18 47 863
50% 19 74 506
40% 19 78 500
30% 19 78 513
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 676
95% 18 42 938
90% 18 42 957
70% 18 42 992
50% 18 43 1013
40% 18 43 1040
30% 18 56 787
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.