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An Information Portal to 105097 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
Sequence Clustering and Redundancy Reduction Results
3CCJ
Sequence Clusters for the Sequence Entities in PDB 3CCJ
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 46 553
95% 19 67 471
90% 19 67 496
70% 19 67 533
50% 19 114 242
40% 19 116 267
30% 19 116 289
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 285
95% 19 74 406
90% 19 74 431
70% 19 74 459
50% 19 74 502
40% 20 77 507
30% 20 78 511
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 44 623
95% 19 68 459
90% 19 68 483
70% 19 68 517
50% 19 117 234
40% 19 117 264
30% 20 317 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 284
95% 19 74 405
90% 19 74 430
70% 19 74 458
50% 19 74 501
40% 19 74 538
30% 19 309 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1481
95% 18 47 779
90% 18 47 813
70% 19 68 510
50% 19 115 238
40% 19 115 274
30% 19 115 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 282
95% 19 74 403
90% 19 74 428
70% 19 74 456
50% 19 76 482
40% 19 76 516
30% 19 78 508
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 321
95% 19 68 461
90% 19 68 486
70% 19 68 520
50% 19 70 545
40% 19 70 578
30% 19 70 579
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 537
95% 19 68 457
90% 19 68 481
70% 19 68 515
50% 19 68 574
40% 19 70 577
30% 19 71 560
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 324
95% 19 68 463
90% 19 68 488
70% 19 68 522
50% 19 70 548
40% 19 70 582
30% 19 71 563
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 333
95% 19 68 455
90% 19 68 479
70% 19 68 513
50% 19 68 571
40% 19 68 609
30% 19 118 281
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 288
95% 19 74 408
90% 19 74 433
70% 19 74 462
50% 19 76 484
40% 19 78 499
30% 19 272 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 67 330
95% 19 74 397
90% 19 74 423
70% 19 74 452
50% 19 74 495
40% 19 121 252
30% 19 121 268
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 287
95% 19 74 407
90% 19 74 432
70% 19 74 461
50% 19 124 220
40% 19 124 247
30% 19 124 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 70 307
95% 19 70 440
90% 19 70 462
70% 19 70 496
50% 19 70 549
40% 19 70 583
30% 19 70 581
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 289
95% 19 74 409
90% 19 74 434
70% 19 74 463
50% 19 74 505
40% 19 74 541
30% 19 74 540
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 319
95% 19 68 456
90% 19 68 480
70% 19 68 514
50% 19 68 572
40% 19 70 576
30% 19 71 559
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 326
95% 19 68 465
90% 19 68 490
70% 19 68 524
50% 19 68 579
40% 19 68 616
30% 19 68 609
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 63 349
95% 19 63 512
90% 19 63 536
70% 19 63 574
50% 19 63 650
40% 19 63 677
30% 19 63 677
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2227
95% 3 17 2809
90% 3 17 2851
70% 3 17 2858
50% 3 17 2835
40% 3 17 2774
30% 3 17 2579
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 328
95% 19 68 467
90% 19 68 492
70% 19 68 526
50% 19 69 562
40% 19 69 601
30% 19 69 598
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 547
95% 19 68 468
90% 19 68 493
70% 19 68 527
50% 19 117 236
40% 19 117 266
30% 19 117 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 325
95% 19 68 464
90% 19 68 489
70% 19 68 523
50% 19 68 578
40% 19 68 615
30% 19 116 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 1474
95% 19 74 401
90% 19 74 426
70% 19 74 455
50% 19 74 498
40% 19 76 515
30% 19 77 514
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 74 283
95% 19 74 404
90% 19 74 429
70% 19 74 457
50% 19 74 499
40% 19 121 253
30% 19 121 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 68 318
95% 19 68 454
90% 19 68 478
70% 19 68 512
50% 19 68 569
40% 19 116 268
30% 20 312 54
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 543
95% 18 47 788
90% 19 68 485
70% 19 68 519
50% 33 95 298
40% 38 105 287
30% 38 107 303
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1727
95% 18 64 498
90% 18 64 521
70% 18 64 560
50% 18 64 629
40% 18 64 662
30% 18 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 47 535
95% 18 47 781
90% 18 47 815
70% 18 47 855
50% 19 74 500
40% 19 78 496
30% 19 78 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 42 671
95% 18 42 928
90% 18 42 948
70% 18 42 984
50% 18 43 1007
40% 18 43 1035
30% 18 55 792
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.