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An Information Portal to 107620 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A
Sequence Clustering and Redundancy Reduction Results
3CCE
Sequence Clusters for the Sequence Entities in PDB 3CCE
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 47 563
95% 22 68 463
90% 22 68 485
70% 22 68 524
50% 22 118 242
40% 22 120 263
30% 22 120 282
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 289
95% 22 74 414
90% 22 74 438
70% 22 74 468
50% 22 74 515
40% 23 77 520
30% 23 78 518
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 44 655
95% 22 68 471
90% 22 68 492
70% 22 68 532
50% 22 120 236
40% 22 120 264
30% 25 332 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 288
95% 22 74 413
90% 22 74 437
70% 22 74 467
50% 22 74 514
40% 22 74 552
30% 24 324 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 23 1530
95% 21 47 818
90% 21 47 853
70% 22 68 525
50% 22 118 243
40% 22 118 271
30% 22 118 291
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 286
95% 22 74 411
90% 22 74 435
70% 22 74 465
50% 22 76 494
40% 22 76 530
30% 22 78 516
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 323
95% 22 68 473
90% 22 68 495
70% 22 68 535
50% 22 70 571
40% 22 70 602
30% 22 70 602
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 47 572
95% 22 68 469
90% 22 68 490
70% 22 68 530
50% 22 68 605
40% 22 70 599
30% 22 71 582
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 326
95% 22 68 475
90% 22 68 497
70% 22 68 537
50% 22 70 574
40% 22 70 606
30% 22 71 584
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 67 335
95% 22 68 467
90% 22 68 488
70% 22 68 528
50% 22 68 602
40% 22 68 634
30% 22 121 279
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 292
95% 22 74 416
90% 22 74 440
70% 22 74 470
50% 22 76 495
40% 22 78 510
30% 24 284 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 67 332
95% 22 74 406
90% 22 74 430
70% 22 74 461
50% 22 74 507
40% 22 124 253
30% 22 124 269
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 291
95% 22 74 415
90% 22 74 439
70% 22 74 469
50% 22 127 220
40% 22 127 247
30% 22 127 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 70 312
95% 22 70 451
90% 22 70 472
70% 22 70 508
50% 22 70 575
40% 22 70 607
30% 22 70 604
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 293
95% 22 74 417
90% 22 74 441
70% 22 74 471
50% 22 74 516
40% 22 74 555
30% 22 74 550
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 321
95% 22 68 468
90% 22 68 489
70% 22 68 529
50% 22 68 603
40% 22 70 598
30% 22 71 581
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 328
95% 22 68 477
90% 22 68 499
70% 22 68 539
50% 22 68 609
40% 22 68 639
30% 22 68 632
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 63 352
95% 22 63 520
90% 22 63 547
70% 22 63 594
50% 22 63 670
40% 22 63 696
30% 22 63 698
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 2301
95% 5 17 2903
90% 5 17 2944
70% 5 17 2950
50% 5 17 2916
40% 5 17 2841
30% 5 17 2647
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 330
95% 22 68 479
90% 22 68 501
70% 22 68 541
50% 22 69 592
40% 22 69 625
30% 22 69 621
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 47 579
95% 22 68 480
90% 22 68 502
70% 22 68 542
50% 22 120 237
40% 22 120 266
30% 22 120 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 327
95% 22 68 476
90% 22 68 498
70% 22 68 538
50% 22 68 608
40% 22 68 638
30% 22 119 288
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 23 1523
95% 22 74 409
90% 22 74 433
70% 22 74 464
50% 22 74 509
40% 22 76 528
30% 22 77 522
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 74 287
95% 22 74 412
90% 22 74 436
70% 22 74 466
50% 22 74 512
40% 22 124 255
30% 22 124 271
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 68 320
95% 22 68 466
90% 22 68 487
70% 22 68 527
50% 22 68 601
40% 22 119 269
30% 25 327 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 47 574
95% 21 47 827
90% 22 68 494
70% 22 68 534
50% 36 95 307
40% 41 105 292
30% 41 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 20 1779
95% 21 64 504
90% 21 64 529
70% 21 64 571
50% 21 64 650
40% 21 64 680
30% 21 65 674
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 47 567
95% 21 47 820
90% 21 47 855
70% 21 47 886
50% 22 74 513
40% 22 78 507
30% 22 78 517
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 42 690
95% 21 42 959
90% 21 42 977
70% 21 42 1009
50% 21 43 1027
40% 21 43 1056
30% 21 56 800
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.