Sequence Similarity Clusters for the Entities in PDB 3CC7

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 757
95 % 20 68 646
90 % 20 68 672
70 % 20 68 713
50 % 20 170 204
40 % 20 172 226
30 % 20 172 231
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 414
95 % 20 74 577
90 % 20 74 607
70 % 20 74 640
50 % 20 74 689
40 % 21 77 691
30 % 21 78 682
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 44 823
95 % 20 68 652
90 % 20 68 679
70 % 20 68 722
50 % 20 175 200
40 % 20 175 220
30 % 24 509 30
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 413
95 % 20 74 576
90 % 20 74 606
70 % 20 74 637
50 % 20 74 685
40 % 20 74 724
30 % 23 491 36
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1925
95 % 19 47 1048
90 % 19 47 1068
70 % 20 68 714
50 % 20 171 205
40 % 20 171 229
30 % 20 171 235
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 411
95 % 20 74 574
90 % 20 74 604
70 % 20 74 634
50 % 20 76 659
40 % 20 76 700
30 % 20 79 670
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 463
95 % 20 68 653
90 % 20 68 681
70 % 20 68 724
50 % 20 70 746
40 % 20 70 784
30 % 20 70 779
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 763
95 % 20 68 651
90 % 20 68 677
70 % 20 68 720
50 % 20 68 773
40 % 20 72 751
30 % 20 72 747
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 465
95 % 20 68 656
90 % 20 68 683
70 % 20 68 728
50 % 20 70 748
40 % 20 70 786
30 % 20 71 761
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 478
95 % 20 68 649
90 % 20 68 675
70 % 20 68 717
50 % 20 68 770
40 % 20 68 806
30 % 20 174 228
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 419
95 % 20 74 581
90 % 20 74 610
70 % 20 74 643
50 % 20 76 662
40 % 20 78 677
30 % 23 399 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 475
95 % 20 74 565
90 % 20 74 596
70 % 20 74 629
50 % 20 74 679
40 % 20 179 210
30 % 20 179 221
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 417
95 % 20 74 579
90 % 20 74 609
70 % 20 74 642
50 % 20 179 194
40 % 20 179 212
30 % 20 179 224
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 70 444
95 % 20 70 627
90 % 20 70 654
70 % 20 70 697
50 % 20 70 749
40 % 20 70 789
30 % 20 70 783
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 421
95 % 20 74 582
90 % 20 74 611
70 % 20 74 644
50 % 20 74 690
40 % 20 74 727
30 % 20 74 725
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 461
95 % 20 68 650
90 % 20 68 676
70 % 20 68 718
50 % 20 68 771
40 % 20 70 781
30 % 20 71 758
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 467
95 % 20 68 658
90 % 20 68 685
70 % 20 68 730
50 % 20 68 777
40 % 20 68 811
30 % 20 68 804
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 63 531
95 % 20 63 742
90 % 20 63 772
70 % 20 63 814
50 % 20 63 858
40 % 20 63 879
30 % 20 63 868
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 2858
95 % 4 17 3583
90 % 4 17 3625
70 % 4 17 3576
50 % 4 17 3498
40 % 4 17 3375
30 % 4 17 3172
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 468
95 % 20 68 659
90 % 20 68 686
70 % 20 68 733
50 % 20 69 758
40 % 20 69 799
30 % 20 69 795
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 769
95 % 20 68 660
90 % 20 68 687
70 % 20 68 734
50 % 20 172 202
40 % 20 172 227
30 % 20 172 233
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 466
95 % 20 68 657
90 % 20 68 684
70 % 20 68 729
50 % 20 68 776
40 % 20 68 810
30 % 20 168 241
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1917
95 % 20 74 569
90 % 20 74 601
70 % 20 74 633
50 % 20 74 681
40 % 20 76 698
30 % 21 78 679
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 412
95 % 20 74 575
90 % 20 74 605
70 % 20 74 635
50 % 20 74 683
40 % 21 179 211
30 % 21 179 223
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 460
95 % 20 68 648
90 % 20 68 674
70 % 20 68 716
50 % 20 68 769
40 % 20 173 223
30 % 24 500 32
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 764
95 % 19 47 1052
90 % 20 68 680
70 % 20 68 723
50 % 34 105 316
40 % 39 120 286
30 % 39 122 283
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2247
95 % 19 64 715
90 % 19 64 745
70 % 19 64 787
50 % 19 64 836
40 % 19 64 858
30 % 19 65 837
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 761
95 % 19 47 1050
90 % 19 47 1071
70 % 19 47 1109
50 % 20 74 684
40 % 20 79 666
30 % 20 79 673
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 42 871
95 % 19 42 1180
90 % 19 42 1205
70 % 19 42 1246
50 % 20 46 1127
40 % 20 46 1137
30 % 20 85 602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.