Sequence Similarity Clusters for the Entities in PDB 3CC7

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 630
95 % 20 68 501
90 % 20 68 530
70 % 20 68 579
50 % 20 132 236
40 % 20 134 256
30 % 20 134 271
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 302
95 % 20 74 444
90 % 20 74 467
70 % 20 74 512
50 % 20 74 592
40 % 21 77 595
30 % 21 78 585
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 44 714
95 % 20 68 509
90 % 20 68 538
70 % 20 68 588
50 % 20 137 223
40 % 20 137 250
30 % 23 407 36
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 301
95 % 20 74 443
90 % 20 74 466
70 % 20 74 509
50 % 20 74 589
40 % 20 74 633
30 % 22 396 45
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1657
95 % 19 47 902
90 % 19 47 935
70 % 20 68 580
50 % 20 132 237
40 % 20 132 263
30 % 20 132 278
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 299
95 % 20 74 440
90 % 20 74 464
70 % 20 74 506
50 % 20 76 564
40 % 20 76 608
30 % 20 78 581
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 346
95 % 20 68 511
90 % 20 68 541
70 % 20 68 591
50 % 20 70 648
40 % 20 70 688
30 % 20 70 690
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 639
95 % 20 68 507
90 % 20 68 536
70 % 20 68 586
50 % 20 68 684
40 % 20 70 685
30 % 20 71 671
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 347
95 % 20 68 512
90 % 20 68 542
70 % 20 68 592
50 % 20 70 649
40 % 20 70 690
30 % 20 71 674
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 356
95 % 20 68 505
90 % 20 68 534
70 % 20 68 584
50 % 20 68 681
40 % 20 68 714
30 % 20 136 267
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 308
95 % 20 74 448
90 % 20 74 471
70 % 20 74 517
50 % 20 76 568
40 % 20 78 583
30 % 22 342 53
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 354
95 % 20 74 432
90 % 20 74 457
70 % 20 74 502
50 % 20 74 580
40 % 20 141 244
30 % 20 141 257
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 304
95 % 20 74 446
90 % 20 74 469
70 % 20 74 514
50 % 20 141 219
40 % 20 141 248
30 % 20 141 260
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 70 331
95 % 20 70 487
90 % 20 70 514
70 % 20 70 563
50 % 20 70 651
40 % 20 70 691
30 % 20 70 691
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 309
95 % 20 74 449
90 % 20 74 472
70 % 20 74 518
50 % 20 74 596
40 % 20 74 640
30 % 20 74 635
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 344
95 % 20 68 506
90 % 20 68 535
70 % 20 68 585
50 % 20 68 682
40 % 20 70 684
30 % 20 71 670
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 349
95 % 20 68 514
90 % 20 68 544
70 % 20 68 594
50 % 20 68 688
40 % 20 68 718
30 % 20 68 719
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 63 379
95 % 20 63 560
90 % 20 63 591
70 % 20 63 639
50 % 20 63 737
40 % 20 63 762
30 % 20 63 766
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 2519
95 % 4 17 3187
90 % 4 17 3237
70 % 4 17 3222
50 % 4 17 3133
40 % 4 17 3048
30 % 4 17 2847
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 351
95 % 20 68 516
90 % 20 68 546
70 % 20 68 596
50 % 20 69 670
40 % 20 69 705
30 % 20 69 706
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 646
95 % 20 68 517
90 % 20 68 547
70 % 20 68 597
50 % 20 134 230
40 % 20 134 258
30 % 20 134 274
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 348
95 % 20 68 513
90 % 20 68 543
70 % 20 68 593
50 % 20 68 687
40 % 20 68 717
30 % 20 132 281
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1653
95 % 20 74 436
90 % 20 74 461
70 % 20 74 505
50 % 20 74 583
40 % 20 76 605
30 % 20 77 592
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 300
95 % 20 74 442
90 % 20 74 465
70 % 20 74 507
50 % 20 74 587
40 % 21 141 247
30 % 21 141 259
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 343
95 % 20 68 504
90 % 20 68 533
70 % 20 68 583
50 % 20 68 680
40 % 20 136 253
30 % 23 402 42
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 641
95 % 19 47 911
90 % 20 68 540
70 % 20 68 590
50 % 34 95 340
40 % 39 107 308
30 % 39 109 317
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1939
95 % 19 64 546
90 % 19 64 577
70 % 19 64 624
50 % 19 64 723
40 % 19 64 750
30 % 19 65 747
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 635
95 % 19 47 906
90 % 19 47 940
70 % 19 47 983
50 % 20 74 588
40 % 20 79 570
30 % 20 79 573
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 42 753
95 % 19 42 1036
90 % 19 42 1054
70 % 19 42 1094
50 % 19 43 1119
40 % 19 43 1138
30 % 19 67 725

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.