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An Information Portal to 105097 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2487U
Sequence Clustering and Redundancy Reduction Results
3CC7
Sequence Clusters for the Sequence Entities in PDB 3CC7
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 46 553
95% 20 67 471
90% 20 67 496
70% 20 67 533
50% 20 114 242
40% 20 116 267
30% 20 116 289
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 285
95% 20 74 406
90% 20 74 431
70% 20 74 459
50% 20 74 502
40% 21 77 507
30% 21 78 511
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 44 623
95% 20 68 459
90% 20 68 483
70% 20 68 517
50% 20 117 234
40% 20 117 264
30% 21 317 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 284
95% 20 74 405
90% 20 74 430
70% 20 74 458
50% 20 74 501
40% 20 74 538
30% 20 309 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 23 1481
95% 19 47 779
90% 19 47 813
70% 20 68 510
50% 20 115 238
40% 20 115 274
30% 20 115 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 282
95% 20 74 403
90% 20 74 428
70% 20 74 456
50% 20 76 482
40% 20 76 516
30% 20 78 508
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 321
95% 20 68 461
90% 20 68 486
70% 20 68 520
50% 20 70 545
40% 20 70 578
30% 20 70 579
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 537
95% 20 68 457
90% 20 68 481
70% 20 68 515
50% 20 68 574
40% 20 70 577
30% 20 71 560
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 324
95% 20 68 463
90% 20 68 488
70% 20 68 522
50% 20 70 548
40% 20 70 582
30% 20 71 563
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 67 333
95% 20 68 455
90% 20 68 479
70% 20 68 513
50% 20 68 571
40% 20 68 609
30% 20 118 281
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 288
95% 20 74 408
90% 20 74 433
70% 20 74 462
50% 20 76 484
40% 20 78 499
30% 20 272 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 67 330
95% 20 74 397
90% 20 74 423
70% 20 74 452
50% 20 74 495
40% 20 121 252
30% 20 121 268
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 287
95% 20 74 407
90% 20 74 432
70% 20 74 461
50% 20 124 220
40% 20 124 247
30% 20 124 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 70 307
95% 20 70 440
90% 20 70 462
70% 20 70 496
50% 20 70 549
40% 20 70 583
30% 20 70 581
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 289
95% 20 74 409
90% 20 74 434
70% 20 74 463
50% 20 74 505
40% 20 74 541
30% 20 74 540
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 319
95% 20 68 456
90% 20 68 480
70% 20 68 514
50% 20 68 572
40% 20 70 576
30% 20 71 559
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 326
95% 20 68 465
90% 20 68 490
70% 20 68 524
50% 20 68 579
40% 20 68 616
30% 20 68 609
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 63 349
95% 20 63 512
90% 20 63 536
70% 20 63 574
50% 20 63 650
40% 20 63 677
30% 20 63 677
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 2227
95% 4 17 2809
90% 4 17 2851
70% 4 17 2858
50% 4 17 2835
40% 4 17 2774
30% 4 17 2579
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 328
95% 20 68 467
90% 20 68 492
70% 20 68 526
50% 20 69 562
40% 20 69 601
30% 20 69 598
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 547
95% 20 68 468
90% 20 68 493
70% 20 68 527
50% 20 117 236
40% 20 117 266
30% 20 117 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 325
95% 20 68 464
90% 20 68 489
70% 20 68 523
50% 20 68 578
40% 20 68 615
30% 20 116 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 23 1474
95% 20 74 401
90% 20 74 426
70% 20 74 455
50% 20 74 498
40% 20 76 515
30% 20 77 514
Entity #30: Chains: 0 - 23S ribosomal RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 283
95% 20 74 404
90% 20 74 429
70% 20 74 457
50% 20 74 499
40% 20 121 253
30% 20 121 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 318
95% 20 68 454
90% 20 68 478
70% 20 68 512
50% 20 68 569
40% 20 116 268
30% 21 312 54
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 543
95% 19 47 788
90% 20 68 485
70% 20 68 519
50% 34 95 298
40% 39 105 287
30% 39 107 303
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 20 1727
95% 19 64 498
90% 19 64 521
70% 19 64 560
50% 19 64 629
40% 19 64 662
30% 19 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 535
95% 19 47 781
90% 19 47 815
70% 19 47 855
50% 20 74 500
40% 20 78 496
30% 20 78 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 42 671
95% 19 42 928
90% 19 42 948
70% 19 42 984
50% 19 43 1007
40% 19 43 1035
30% 19 55 792
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.