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An Information Portal to 111749 Biological Macromolecular Structures

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2487U
Sequence Clustering and Redundancy Reduction Results
3CC7
Sequence Clusters for the Sequence Entities in PDB 3CC7
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 593
95% 20 68 481
90% 20 68 504
70% 20 68 554
50% 20 126 235
40% 20 128 255
30% 20 128 270
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 293
95% 20 74 427
90% 20 74 453
70% 20 74 491
50% 20 74 560
40% 21 77 562
30% 21 78 556
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 44 686
95% 20 68 489
90% 20 68 512
70% 20 68 562
50% 20 128 228
40% 20 128 257
30% 23 366 45
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 292
95% 20 74 426
90% 20 74 452
70% 20 74 488
50% 20 74 557
40% 20 74 598
30% 22 358 50
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 23 1589
95% 19 47 857
90% 19 47 893
70% 20 68 555
50% 20 126 236
40% 20 126 264
30% 20 126 279
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 290
95% 20 74 423
90% 20 74 450
70% 20 74 485
50% 20 76 534
40% 20 76 576
30% 20 78 553
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 331
95% 20 68 491
90% 20 68 515
70% 20 68 565
50% 20 70 613
40% 20 70 650
30% 20 70 646
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 602
95% 20 68 487
90% 20 68 510
70% 20 68 560
50% 20 68 644
40% 20 70 647
30% 20 71 628
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 332
95% 20 68 492
90% 20 68 516
70% 20 68 566
50% 20 70 615
40% 20 70 652
30% 20 71 630
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 67 343
95% 20 68 485
90% 20 68 508
70% 20 68 558
50% 20 68 641
40% 20 68 674
30% 20 129 268
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 299
95% 20 74 431
90% 20 74 457
70% 20 74 494
50% 20 76 538
40% 20 78 551
30% 22 310 61
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 67 339
95% 20 74 416
90% 20 74 443
70% 20 74 481
50% 20 74 550
40% 20 132 248
30% 20 132 262
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 295
95% 20 74 429
90% 20 74 455
70% 20 74 492
50% 20 135 218
40% 20 135 242
30% 20 135 257
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 70 320
95% 20 70 467
90% 20 70 490
70% 20 70 539
50% 20 70 616
40% 20 70 653
30% 20 70 648
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 301
95% 20 74 432
90% 20 74 458
70% 20 74 495
50% 20 74 564
40% 20 74 603
30% 20 74 598
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 329
95% 20 68 486
90% 20 68 509
70% 20 68 559
50% 20 68 642
40% 20 70 646
30% 20 71 627
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 334
95% 20 68 494
90% 20 68 518
70% 20 68 568
50% 20 68 648
40% 20 68 678
30% 20 68 677
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 63 366
95% 20 63 540
90% 20 63 569
70% 20 63 621
50% 20 63 709
40% 20 63 736
30% 20 63 737
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 2428
95% 4 17 3068
90% 4 17 3114
70% 4 17 3107
50% 4 17 3024
40% 4 17 2940
30% 4 17 2752
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 336
95% 20 68 496
90% 20 68 520
70% 20 68 570
50% 20 69 633
40% 20 69 669
30% 20 69 666
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 609
95% 20 68 497
90% 20 68 521
70% 20 68 571
50% 20 128 229
40% 20 128 258
30% 20 128 271
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 333
95% 20 68 493
90% 20 68 517
70% 20 68 567
50% 20 68 647
40% 20 68 677
30% 20 127 275
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 23 1584
95% 20 74 420
90% 20 74 447
70% 20 74 484
50% 20 74 552
40% 20 76 572
30% 20 77 561
Entity #30: Chains: 0 - 23S ribosomal RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 74 291
95% 20 74 425
90% 20 74 451
70% 20 74 486
50% 20 74 555
40% 21 134 244
30% 21 134 259
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 68 328
95% 20 68 484
90% 20 68 507
70% 20 68 557
50% 20 68 640
40% 20 127 261
30% 23 361 48
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 604
95% 19 47 867
90% 20 68 514
70% 20 68 564
50% 34 95 328
40% 39 105 302
30% 39 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 20 1864
95% 19 64 527
90% 19 64 554
70% 19 64 602
50% 19 64 693
40% 19 64 720
30% 19 65 715
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 47 597
95% 19 47 860
90% 19 47 896
70% 19 47 934
50% 20 74 556
40% 20 79 538
30% 20 79 544
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 42 724
95% 19 42 1005
90% 19 42 1025
70% 19 42 1061
50% 19 43 1080
40% 19 43 1102
30% 19 62 748
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.