Sequence Similarity Clusters for the Entities in PDB 3CC7

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 687
95 % 20 68 540
90 % 20 68 568
70 % 20 68 618
50 % 20 141 229
40 % 20 143 251
30 % 20 143 261
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 322
95 % 20 74 478
90 % 20 74 508
70 % 20 74 553
50 % 20 74 639
40 % 21 77 647
30 % 21 78 649
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 44 762
95 % 20 68 546
90 % 20 68 576
70 % 20 68 626
50 % 20 146 222
40 % 20 146 248
30 % 24 446 35
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 321
95 % 20 74 477
90 % 20 74 506
70 % 20 74 550
50 % 20 74 636
40 % 20 74 683
30 % 23 435 38
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1793
95 % 19 47 976
90 % 19 47 1000
70 % 20 68 619
50 % 20 142 230
40 % 20 142 259
30 % 20 142 267
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 319
95 % 20 74 475
90 % 20 74 504
70 % 20 74 547
50 % 20 76 617
40 % 20 76 658
30 % 20 78 646
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 367
95 % 20 68 548
90 % 20 68 578
70 % 20 68 629
50 % 20 70 690
40 % 20 70 736
30 % 20 70 739
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 693
95 % 20 68 545
90 % 20 68 574
70 % 20 68 625
50 % 20 68 714
40 % 20 70 733
30 % 20 71 722
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 369
95 % 20 68 550
90 % 20 68 580
70 % 20 68 632
50 % 20 70 691
40 % 20 70 737
30 % 20 71 725
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 380
95 % 20 68 543
90 % 20 68 572
70 % 20 68 623
50 % 20 68 712
40 % 20 68 751
30 % 20 145 260
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 327
95 % 20 74 482
90 % 20 74 512
70 % 20 74 557
50 % 20 76 621
40 % 20 78 635
30 % 23 372 55
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 376
95 % 20 74 468
90 % 20 74 498
70 % 20 74 543
50 % 20 74 630
40 % 20 150 236
30 % 20 150 249
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 325
95 % 20 74 480
90 % 20 74 510
70 % 20 74 555
50 % 20 150 216
40 % 20 150 239
30 % 20 150 251
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 70 349
95 % 20 70 521
90 % 20 70 549
70 % 20 70 600
50 % 20 70 692
40 % 20 70 738
30 % 20 70 740
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 328
95 % 20 74 483
90 % 20 74 513
70 % 20 74 558
50 % 20 74 641
40 % 20 74 688
30 % 20 74 691
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 364
95 % 20 68 544
90 % 20 68 573
70 % 20 68 624
50 % 20 68 713
40 % 20 70 731
30 % 20 71 721
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 371
95 % 20 68 552
90 % 20 68 582
70 % 20 68 634
50 % 20 68 718
40 % 20 68 755
30 % 20 68 759
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 63 425
95 % 20 63 631
90 % 20 63 667
70 % 20 63 709
50 % 20 63 777
40 % 20 63 812
30 % 20 63 808
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 2696
95 % 4 17 3384
90 % 4 17 3438
70 % 4 17 3405
50 % 4 17 3333
40 % 4 17 3219
30 % 4 17 3013
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 372
95 % 20 68 553
90 % 20 68 583
70 % 20 68 635
50 % 20 69 703
40 % 20 69 745
30 % 20 69 751
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 704
95 % 20 68 555
90 % 20 68 585
70 % 20 68 636
50 % 20 143 224
40 % 20 143 252
30 % 20 143 262
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 370
95 % 20 68 551
90 % 20 68 581
70 % 20 68 633
50 % 20 68 717
40 % 20 68 754
30 % 20 140 273
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1787
95 % 20 74 471
90 % 20 74 501
70 % 20 74 546
50 % 20 74 632
40 % 20 76 657
30 % 20 77 656
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 320
95 % 20 74 476
90 % 20 74 505
70 % 20 74 548
50 % 20 74 634
40 % 21 151 235
30 % 21 151 248
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 363
95 % 20 68 542
90 % 20 68 571
70 % 20 68 622
50 % 20 68 711
40 % 20 145 249
30 % 24 441 37
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 696
95 % 19 47 982
90 % 20 68 577
70 % 20 68 627
50 % 34 101 321
40 % 39 115 285
30 % 39 117 296
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2100
95 % 19 64 605
90 % 19 64 639
70 % 19 64 685
50 % 19 64 763
40 % 19 64 797
30 % 19 65 786
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 690
95 % 19 47 980
90 % 19 47 1005
70 % 19 47 1049
50 % 20 74 635
40 % 20 79 625
30 % 20 79 636
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 42 806
95 % 19 42 1120
90 % 19 42 1143
70 % 19 42 1187
50 % 20 46 1064
40 % 20 46 1081
30 % 20 70 706

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.