Sequence Similarity Clusters for the Entities in PDB 3CC7

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 730
95 % 20 68 623
90 % 20 68 651
70 % 20 68 686
50 % 20 160 214
40 % 20 162 233
30 % 20 162 238
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 375
95 % 20 74 539
90 % 20 74 579
70 % 20 74 613
50 % 20 74 666
40 % 21 77 677
30 % 21 78 673
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 44 799
95 % 20 68 630
90 % 20 68 658
70 % 20 68 695
50 % 20 165 207
40 % 20 165 228
30 % 24 492 30
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 374
95 % 20 74 538
90 % 20 74 578
70 % 20 74 610
50 % 20 74 663
40 % 20 74 706
30 % 23 478 36
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1885
95 % 19 47 1021
90 % 19 47 1038
70 % 20 68 687
50 % 20 161 215
40 % 20 161 237
30 % 20 161 246
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 371
95 % 20 74 535
90 % 20 74 576
70 % 20 74 607
50 % 20 76 643
40 % 20 76 688
30 % 20 79 663
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 445
95 % 20 68 631
90 % 20 68 660
70 % 20 68 697
50 % 20 70 717
40 % 20 70 756
30 % 20 70 758
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 736
95 % 20 68 629
90 % 20 68 657
70 % 20 68 693
50 % 20 68 747
40 % 20 72 728
30 % 20 72 726
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 447
95 % 20 68 634
90 % 20 68 662
70 % 20 68 700
50 % 20 70 718
40 % 20 70 757
30 % 20 71 742
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 457
95 % 20 68 627
90 % 20 68 655
70 % 20 68 690
50 % 20 68 744
40 % 20 68 776
30 % 20 164 236
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 380
95 % 20 74 543
90 % 20 74 583
70 % 20 74 618
50 % 20 76 646
40 % 20 78 665
30 % 23 396 56
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 67 455
95 % 20 74 530
90 % 20 74 570
70 % 20 74 602
50 % 20 74 656
40 % 20 169 220
30 % 20 169 228
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 379
95 % 20 74 542
90 % 20 74 582
70 % 20 74 617
50 % 20 169 202
40 % 20 169 223
30 % 20 169 231
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 70 420
95 % 20 70 603
90 % 20 70 634
70 % 20 70 667
50 % 20 70 720
40 % 20 70 760
30 % 20 70 761
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 381
95 % 20 74 544
90 % 20 74 584
70 % 20 74 619
50 % 20 74 667
40 % 20 74 709
30 % 20 74 708
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 441
95 % 20 68 628
90 % 20 68 656
70 % 20 68 691
50 % 20 68 745
40 % 20 70 753
30 % 20 71 740
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 449
95 % 20 68 636
90 % 20 68 664
70 % 20 68 702
50 % 20 68 751
40 % 20 68 780
30 % 20 68 783
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 63 489
95 % 20 63 693
90 % 20 63 725
70 % 20 63 770
50 % 20 63 815
40 % 20 63 838
30 % 20 63 834
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 2808
95 % 4 17 3532
90 % 4 17 3576
70 % 4 17 3522
50 % 4 17 3445
40 % 4 17 3327
30 % 4 17 3121
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 452
95 % 20 68 638
90 % 20 68 665
70 % 20 68 704
50 % 20 69 730
40 % 20 69 770
30 % 20 69 774
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 743
95 % 20 68 639
90 % 20 68 666
70 % 20 68 706
50 % 20 162 213
40 % 20 162 236
30 % 20 162 241
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 448
95 % 20 68 635
90 % 20 68 663
70 % 20 68 701
50 % 20 68 750
40 % 20 68 779
30 % 20 158 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1877
95 % 20 74 532
90 % 20 74 572
70 % 20 74 606
50 % 20 74 659
40 % 20 76 686
30 % 20 77 681
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 74 372
95 % 20 74 536
90 % 20 74 577
70 % 20 74 608
50 % 20 74 661
40 % 21 169 222
30 % 21 169 229
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 68 440
95 % 20 68 626
90 % 20 68 654
70 % 20 68 689
50 % 20 68 742
40 % 20 163 231
30 % 24 483 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 737
95 % 19 47 1025
90 % 20 68 659
70 % 20 68 696
50 % 34 105 308
40 % 39 120 279
30 % 39 122 278
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2205
95 % 19 64 672
90 % 19 64 701
70 % 19 64 747
50 % 19 64 798
40 % 19 64 823
30 % 19 65 812
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 734
95 % 19 47 1023
90 % 19 47 1041
70 % 19 47 1083
50 % 20 74 662
40 % 20 79 653
30 % 20 79 666
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 42 846
95 % 19 42 1154
90 % 19 42 1177
70 % 19 42 1225
50 % 20 46 1100
40 % 20 46 1118
30 % 20 84 598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.