Sequence Similarity Clusters for the Entities in PDB 3CC4

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 719
95 % 33 68 598
90 % 33 68 635
70 % 33 68 674
50 % 33 158 214
40 % 33 160 233
30 % 33 160 245
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 345
95 % 33 74 509
90 % 33 74 545
70 % 33 74 584
50 % 33 74 657
40 % 34 77 667
30 % 34 78 668
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 788
95 % 33 68 607
90 % 33 68 641
70 % 33 68 682
50 % 33 163 208
40 % 33 163 229
30 % 38 479 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 344
95 % 33 74 508
90 % 33 74 542
70 % 33 74 580
50 % 33 74 654
40 % 33 74 700
30 % 37 468 38
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 1865
95 % 31 47 1012
90 % 31 47 1030
70 % 33 68 675
50 % 33 159 215
40 % 33 159 237
30 % 33 159 249
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 342
95 % 33 74 506
90 % 33 74 538
70 % 33 74 576
50 % 33 76 634
40 % 33 76 678
30 % 33 79 658
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 418
95 % 33 68 609
90 % 33 68 643
70 % 33 68 684
50 % 33 70 707
40 % 33 70 746
30 % 33 70 751
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 726
95 % 33 68 605
90 % 33 68 640
70 % 33 68 681
50 % 33 68 735
40 % 33 72 717
30 % 33 72 721
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 420
95 % 33 68 612
90 % 33 68 645
70 % 33 68 687
50 % 33 70 709
40 % 33 70 748
30 % 33 71 736
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 67 431
95 % 33 68 603
90 % 33 68 638
70 % 33 68 678
50 % 33 68 732
40 % 33 68 766
30 % 33 162 242
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 351
95 % 33 74 514
90 % 33 74 551
70 % 33 74 589
50 % 33 76 636
40 % 33 78 657
30 % 37 388 57
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 67 426
95 % 33 74 502
90 % 33 74 533
70 % 33 74 569
50 % 33 74 647
40 % 33 167 222
30 % 33 167 230
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 349
95 % 33 74 512
90 % 33 74 548
70 % 33 74 588
50 % 33 167 203
40 % 33 167 224
30 % 33 167 232
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 70 397
95 % 32 70 579
90 % 32 70 618
70 % 32 70 655
50 % 32 70 710
40 % 32 70 750
30 % 32 70 754
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 352
95 % 33 74 515
90 % 33 74 552
70 % 33 74 590
50 % 33 74 659
40 % 33 74 703
30 % 33 74 704
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 412
95 % 33 68 604
90 % 33 68 639
70 % 33 68 679
50 % 33 68 733
40 % 33 70 742
30 % 33 71 734
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 422
95 % 33 68 614
90 % 33 68 647
70 % 33 68 689
50 % 33 68 739
40 % 33 68 770
30 % 33 68 774
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 63 478
95 % 32 63 678
90 % 32 63 709
70 % 32 63 751
50 % 32 63 801
40 % 32 63 828
30 % 32 63 824
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 17 2777
95 % 10 17 3483
90 % 10 17 3532
70 % 10 17 3482
50 % 10 17 3411
40 % 10 17 3297
30 % 10 17 3089
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 423
95 % 33 68 615
90 % 33 68 648
70 % 33 68 692
50 % 33 69 720
40 % 33 69 759
30 % 33 69 765
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 733
95 % 33 68 616
90 % 33 68 649
70 % 33 68 693
50 % 33 160 213
40 % 33 160 235
30 % 33 160 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 421
95 % 33 68 613
90 % 33 68 646
70 % 33 68 688
50 % 33 68 738
40 % 33 68 769
30 % 33 156 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 1858
95 % 33 74 504
90 % 33 74 535
70 % 33 74 575
50 % 33 74 650
40 % 33 76 677
30 % 33 77 676
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 343
95 % 33 74 507
90 % 33 74 540
70 % 33 74 578
50 % 33 74 652
40 % 34 167 223
30 % 34 167 231
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 411
95 % 33 68 602
90 % 33 68 637
70 % 33 68 677
50 % 33 68 731
40 % 33 161 230
30 % 38 473 37
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 727
95 % 31 47 1016
90 % 33 68 642
70 % 33 68 683
50 % 48 105 303
40 % 55 119 275
30 % 55 121 281
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2180
95 % 32 64 659
90 % 32 64 690
70 % 32 64 731
50 % 32 64 787
40 % 32 64 814
30 % 32 65 801
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 723
95 % 31 47 1014
90 % 31 47 1033
70 % 31 47 1071
50 % 33 74 653
40 % 33 79 645
30 % 33 79 661
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 42 834
95 % 29 42 1143
90 % 29 42 1166
70 % 29 42 1211
50 % 30 46 1088
40 % 30 46 1104
30 % 30 84 589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.