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An Information Portal to 105097 Biological Macromolecular Structures

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Sequence Clustering and Redundancy Reduction Results
3CC4
Sequence Clusters for the Sequence Entities in PDB 3CC4
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 46 553
95% 32 67 471
90% 32 67 496
70% 32 67 533
50% 32 114 242
40% 32 116 267
30% 32 116 289
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 285
95% 33 74 406
90% 33 74 431
70% 33 74 459
50% 33 74 502
40% 34 77 507
30% 34 78 511
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 44 623
95% 33 68 459
90% 33 68 483
70% 33 68 517
50% 33 117 234
40% 33 117 264
30% 35 317 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 284
95% 33 74 405
90% 33 74 430
70% 33 74 458
50% 33 74 501
40% 33 74 538
30% 34 309 55
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1481
95% 31 47 779
90% 31 47 813
70% 33 68 510
50% 33 115 238
40% 33 115 274
30% 33 115 294
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 282
95% 33 74 403
90% 33 74 428
70% 33 74 456
50% 33 76 482
40% 33 76 516
30% 33 78 508
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 321
95% 33 68 461
90% 33 68 486
70% 33 68 520
50% 33 70 545
40% 33 70 578
30% 33 70 579
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 537
95% 33 68 457
90% 33 68 481
70% 33 68 515
50% 33 68 574
40% 33 70 577
30% 33 71 560
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 324
95% 33 68 463
90% 33 68 488
70% 33 68 522
50% 33 70 548
40% 33 70 582
30% 33 71 563
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 67 333
95% 33 68 455
90% 33 68 479
70% 33 68 513
50% 33 68 571
40% 33 68 609
30% 33 118 281
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 288
95% 33 74 408
90% 33 74 433
70% 33 74 462
50% 33 76 484
40% 33 78 499
30% 34 272 70
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 67 330
95% 33 74 397
90% 33 74 423
70% 33 74 452
50% 33 74 495
40% 33 121 252
30% 33 121 268
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 287
95% 33 74 407
90% 33 74 432
70% 33 74 461
50% 33 124 220
40% 33 124 247
30% 33 124 265
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 70 307
95% 32 70 440
90% 32 70 462
70% 32 70 496
50% 32 70 549
40% 32 70 583
30% 32 70 581
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 289
95% 33 74 409
90% 33 74 434
70% 33 74 463
50% 33 74 505
40% 33 74 541
30% 33 74 540
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 319
95% 33 68 456
90% 33 68 480
70% 33 68 514
50% 33 68 572
40% 33 70 576
30% 33 71 559
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 326
95% 33 68 465
90% 33 68 490
70% 33 68 524
50% 33 68 579
40% 33 68 616
30% 33 68 609
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 63 349
95% 32 63 512
90% 32 63 536
70% 32 63 574
50% 32 63 650
40% 32 63 677
30% 32 63 677
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 17 2227
95% 10 17 2809
90% 10 17 2851
70% 10 17 2858
50% 10 17 2835
40% 10 17 2774
30% 10 17 2579
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 328
95% 33 68 467
90% 33 68 492
70% 33 68 526
50% 33 69 562
40% 33 69 601
30% 33 69 598
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 547
95% 33 68 468
90% 33 68 493
70% 33 68 527
50% 33 117 236
40% 33 117 266
30% 33 117 284
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 325
95% 33 68 464
90% 33 68 489
70% 33 68 523
50% 33 68 578
40% 33 68 615
30% 33 116 290
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1474
95% 33 74 401
90% 33 74 426
70% 33 74 455
50% 33 74 498
40% 33 76 515
30% 33 77 514
Entity #30: Chains: 0 - 23S ribosomal RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 283
95% 33 74 404
90% 33 74 429
70% 33 74 457
50% 33 74 499
40% 33 121 253
30% 33 121 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 318
95% 33 68 454
90% 33 68 478
70% 33 68 512
50% 33 68 569
40% 33 116 268
30% 35 312 54
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 543
95% 31 47 788
90% 33 68 485
70% 33 68 519
50% 48 95 298
40% 55 105 287
30% 55 107 303
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 1727
95% 32 64 498
90% 32 64 521
70% 32 64 560
50% 32 64 629
40% 32 64 662
30% 32 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 535
95% 31 47 781
90% 31 47 815
70% 31 47 855
50% 33 74 500
40% 33 78 496
30% 33 78 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 42 671
95% 29 42 928
90% 29 42 948
70% 29 42 984
50% 29 43 1007
40% 29 43 1035
30% 29 55 792
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.