POP-OUT | CLOSE
 
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Sequence Clustering and Redundancy Reduction Results
3CC4
Sequence Clusters for the Sequence Entities in PDB 3CC4
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 46 510
95% 32 67 461
90% 32 67 484
70% 32 67 517
50% 32 102 332
40% 32 104 347
30% 32 104 358
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 277
95% 33 74 396
90% 33 74 420
70% 33 74 445
50% 33 74 493
40% 34 77 495
30% 34 78 502
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 44 547
95% 33 68 448
90% 33 68 470
70% 33 68 501
50% 33 105 320
40% 33 105 344
30% 34 402 56
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 276
95% 33 74 395
90% 33 74 419
70% 33 74 444
50% 33 74 492
40% 33 74 523
30% 33 394 62
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1373
95% 31 47 731
90% 31 47 758
70% 33 68 494
50% 33 103 330
40% 33 103 353
30% 33 103 364
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 274
95% 33 74 393
90% 33 74 417
70% 33 74 442
50% 33 76 475
40% 33 76 504
30% 33 78 499
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 312
95% 33 68 450
90% 33 68 473
70% 33 68 504
50% 33 70 529
40% 33 70 556
30% 33 70 561
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 499
95% 33 68 446
90% 33 68 468
70% 33 68 499
50% 33 68 554
40% 33 70 555
30% 33 71 547
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 315
95% 33 68 452
90% 33 68 475
70% 33 68 506
50% 33 70 531
40% 33 70 559
30% 33 71 549
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 67 326
95% 33 68 444
90% 33 68 466
70% 33 68 497
50% 33 68 551
40% 33 68 583
30% 33 106 349
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 281
95% 33 74 398
90% 33 74 422
70% 33 74 447
50% 33 76 476
40% 33 78 486
30% 33 369 73
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 67 323
95% 33 74 388
90% 33 74 413
70% 33 74 439
50% 33 74 487
40% 33 109 318
30% 33 109 332
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 280
95% 33 74 397
90% 33 74 421
70% 33 74 446
50% 33 112 286
40% 33 112 310
30% 33 112 327
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 70 302
95% 32 70 428
90% 32 70 448
70% 32 70 477
50% 32 70 532
40% 32 70 560
30% 32 70 562
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 282
95% 33 74 399
90% 33 74 423
70% 33 74 448
50% 33 74 494
40% 33 74 525
30% 33 74 527
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 310
95% 33 68 445
90% 33 68 467
70% 33 68 498
50% 33 68 552
40% 33 70 554
30% 33 71 546
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 317
95% 33 68 454
90% 33 68 477
70% 33 68 508
50% 33 68 558
40% 33 68 588
30% 33 68 584
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 63 345
95% 32 63 495
90% 32 63 518
70% 32 63 555
50% 32 63 603
40% 32 63 630
30% 32 63 632
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 17 2107
95% 10 17 2673
90% 10 17 2725
70% 10 17 2740
50% 10 17 2758
40% 10 17 2702
30% 10 17 2515
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 319
95% 33 68 456
90% 33 68 479
70% 33 68 510
50% 33 69 544
40% 33 69 575
30% 33 69 575
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 503
95% 33 68 457
90% 33 68 480
70% 33 68 511
50% 33 105 323
40% 33 105 346
30% 33 105 357
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 316
95% 33 68 453
90% 33 68 476
70% 33 68 507
50% 33 68 557
40% 33 68 587
30% 33 104 361
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1368
95% 33 74 391
90% 33 74 415
70% 33 74 441
50% 33 74 489
40% 33 76 503
30% 33 77 505
Entity #30: Chains: 0 - 23S ribosomal RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 275
95% 33 74 394
90% 33 74 418
70% 33 74 443
50% 33 74 490
40% 33 109 321
30% 33 109 335
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 309
95% 33 68 443
90% 33 68 465
70% 33 68 496
50% 33 68 550
40% 33 104 349
30% 34 397 61
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 501
95% 31 47 740
90% 33 68 472
70% 33 68 503
50% 48 97 279
40% 54 106 271
30% 54 108 290
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 1606
95% 32 64 483
90% 32 64 506
70% 32 64 539
50% 32 64 589
40% 32 64 618
30% 32 65 611
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 497
95% 31 47 733
90% 31 47 760
70% 31 47 797
50% 33 74 491
40% 33 78 483
30% 33 78 501
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 42 579
95% 29 42 833
90% 29 42 858
70% 29 42 891
50% 29 43 923
40% 29 43 949
30% 29 55 730
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.