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Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Sequence Clustering and Redundancy Reduction Results
3CC4
Sequence Clusters for the Sequence Entities in PDB 3CC4
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 573
95% 33 68 468
90% 33 68 491
70% 33 68 530
50% 33 120 244
40% 33 122 262
30% 33 122 281
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 290
95% 33 74 418
90% 33 74 443
70% 33 74 474
50% 33 74 525
40% 34 77 530
30% 34 78 525
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 44 670
95% 33 68 475
90% 33 68 498
70% 33 68 538
50% 33 122 239
40% 33 122 263
30% 37 343 47
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 289
95% 33 74 417
90% 33 74 442
70% 33 74 473
50% 33 74 523
40% 33 74 564
30% 36 335 51
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1548
95% 31 47 830
90% 31 47 864
70% 33 68 531
50% 33 120 245
40% 33 120 269
30% 33 120 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 287
95% 33 74 415
90% 33 74 440
70% 33 74 470
50% 33 76 499
40% 33 76 539
30% 33 78 523
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 327
95% 33 68 477
90% 33 68 501
70% 33 68 541
50% 33 70 581
40% 33 70 616
30% 33 70 617
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 582
95% 33 68 473
90% 33 68 496
70% 33 68 536
50% 33 68 616
40% 33 70 615
30% 33 71 594
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 329
95% 33 68 479
90% 33 68 503
70% 33 68 543
50% 33 70 584
40% 33 70 620
30% 33 71 597
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 67 338
95% 33 68 471
90% 33 68 494
70% 33 68 534
50% 33 68 613
40% 33 68 647
30% 33 123 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 293
95% 33 74 420
90% 33 74 445
70% 33 74 477
50% 33 76 500
40% 33 78 520
30% 36 293 68
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 67 335
95% 33 74 409
90% 33 74 434
70% 33 74 466
50% 33 74 516
40% 33 126 254
30% 33 126 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 292
95% 33 74 419
90% 33 74 444
70% 33 74 476
50% 33 129 221
40% 33 129 247
30% 33 129 263
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 70 314
95% 32 70 456
90% 32 70 477
70% 32 70 513
50% 32 70 585
40% 32 70 621
30% 32 70 619
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 294
95% 33 74 421
90% 33 74 446
70% 33 74 478
50% 33 74 526
40% 33 74 566
30% 33 74 560
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 325
95% 33 68 472
90% 33 68 495
70% 33 68 535
50% 33 68 614
40% 33 70 614
30% 33 71 593
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 331
95% 33 68 481
90% 33 68 505
70% 33 68 545
50% 33 68 620
40% 33 68 652
30% 33 68 647
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 63 355
95% 32 63 525
90% 32 63 554
70% 32 63 606
50% 32 63 683
40% 32 63 712
30% 32 63 712
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 17 2325
95% 10 17 2932
90% 10 17 2976
70% 10 17 2984
50% 10 17 2946
40% 10 17 2873
30% 10 17 2677
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 333
95% 33 68 483
90% 33 68 507
70% 33 68 547
50% 33 69 603
40% 33 69 639
30% 33 69 634
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 589
95% 33 68 484
90% 33 68 508
70% 33 68 549
50% 33 122 240
40% 33 122 264
30% 33 122 282
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 330
95% 33 68 480
90% 33 68 504
70% 33 68 544
50% 33 68 619
40% 33 68 651
30% 33 121 284
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 23 1542
95% 33 74 413
90% 33 74 438
70% 33 74 469
50% 33 74 518
40% 33 76 537
30% 33 77 530
Entity #30: Chains: 0 - 23S ribosomal RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 74 288
95% 33 74 416
90% 33 74 441
70% 33 74 471
50% 33 74 521
40% 33 127 253
30% 33 127 269
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 68 324
95% 33 68 470
90% 33 68 493
70% 33 68 533
50% 33 68 611
40% 33 121 267
30% 37 338 50
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 584
95% 31 47 838
90% 33 68 500
70% 33 68 540
50% 48 95 310
40% 55 105 292
30% 55 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 1805
95% 32 64 510
90% 32 64 537
70% 32 64 586
50% 32 64 661
40% 32 64 692
30% 32 65 685
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 47 577
95% 31 47 832
90% 31 47 866
70% 31 47 897
50% 33 74 522
40% 33 79 507
30% 33 79 515
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 42 705
95% 29 42 980
90% 29 42 998
70% 29 42 1027
50% 29 43 1043
40% 29 43 1068
30% 29 57 793
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.