Sequence Similarity Clusters for the Entities in PDB 3CC4

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 764
95 % 33 68 653
90 % 33 68 681
70 % 33 68 724
50 % 33 170 206
40 % 33 172 227
30 % 33 172 233
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 418
95 % 33 74 585
90 % 33 74 616
70 % 33 74 648
50 % 33 74 697
40 % 34 77 700
30 % 34 78 686
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 827
95 % 33 68 660
90 % 33 68 689
70 % 33 68 734
50 % 33 175 201
40 % 33 175 223
30 % 38 509 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 417
95 % 33 74 584
90 % 33 74 615
70 % 33 74 645
50 % 33 74 693
40 % 33 74 732
30 % 37 491 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 1942
95 % 31 47 1055
90 % 31 47 1074
70 % 33 68 726
50 % 33 171 207
40 % 33 171 231
30 % 33 171 237
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 415
95 % 33 74 582
90 % 33 74 613
70 % 33 74 642
50 % 33 76 664
40 % 33 76 707
30 % 33 79 675
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 469
95 % 33 68 661
90 % 33 68 691
70 % 33 68 736
50 % 33 70 757
40 % 33 70 793
30 % 33 70 784
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 769
95 % 33 68 659
90 % 33 68 687
70 % 33 68 732
50 % 33 68 784
40 % 33 72 759
30 % 33 72 751
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 471
95 % 33 68 664
90 % 33 68 693
70 % 33 68 739
50 % 33 70 759
40 % 33 70 795
30 % 33 71 766
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 67 485
95 % 33 68 657
90 % 33 68 685
70 % 33 68 729
50 % 33 68 781
40 % 33 68 816
30 % 33 174 231
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 422
95 % 33 74 588
90 % 33 74 619
70 % 33 74 651
50 % 33 76 669
40 % 33 78 688
30 % 37 399 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 67 482
95 % 33 74 573
90 % 33 74 605
70 % 33 74 638
50 % 33 74 687
40 % 33 179 214
30 % 33 179 223
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 421
95 % 33 74 587
90 % 33 74 618
70 % 33 74 650
50 % 33 179 196
40 % 33 179 216
30 % 33 179 226
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 70 448
95 % 32 70 631
90 % 32 70 660
70 % 32 70 709
50 % 32 70 760
40 % 32 70 798
30 % 32 70 788
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 423
95 % 33 74 589
90 % 33 74 620
70 % 33 74 652
50 % 33 74 698
40 % 33 74 735
30 % 33 74 727
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 467
95 % 33 68 658
90 % 33 68 686
70 % 33 68 730
50 % 33 68 782
40 % 33 70 790
30 % 33 71 763
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 473
95 % 33 68 666
90 % 33 68 695
70 % 33 68 741
50 % 33 68 787
40 % 33 68 820
30 % 33 68 809
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 63 541
95 % 32 63 751
90 % 32 63 779
70 % 32 63 823
50 % 32 63 866
40 % 32 63 888
30 % 32 63 875
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 17 2875
95 % 10 17 3608
90 % 10 17 3651
70 % 10 17 3599
50 % 10 17 3525
40 % 10 17 3401
30 % 10 17 3191
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 475
95 % 33 68 669
90 % 33 68 698
70 % 33 68 745
50 % 33 69 769
40 % 33 69 809
30 % 33 69 802
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 775
95 % 33 68 670
90 % 33 68 699
70 % 33 68 746
50 % 33 172 204
40 % 33 172 228
30 % 33 172 234
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 472
95 % 33 68 665
90 % 33 68 694
70 % 33 68 740
50 % 33 68 786
40 % 33 68 819
30 % 33 168 243
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 23 1932
95 % 33 74 578
90 % 33 74 611
70 % 33 74 641
50 % 33 74 689
40 % 33 76 705
30 % 34 78 683
Entity #30 | Chains: 0
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 74 416
95 % 33 74 583
90 % 33 74 614
70 % 33 74 643
50 % 33 74 691
40 % 34 179 215
30 % 34 179 225
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 68 466
95 % 33 68 656
90 % 33 68 684
70 % 33 68 728
50 % 33 68 780
40 % 33 173 224
30 % 38 500 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 770
95 % 31 47 1059
90 % 33 68 690
70 % 33 68 735
50 % 48 105 321
40 % 55 122 277
30 % 55 124 279
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2265
95 % 32 64 731
90 % 32 64 760
70 % 32 64 802
50 % 32 64 850
40 % 32 64 874
30 % 32 65 848
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 47 767
95 % 31 47 1057
90 % 31 47 1077
70 % 31 47 1114
50 % 33 74 692
40 % 33 79 676
30 % 33 79 677
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 42 877
95 % 29 42 1191
90 % 29 42 1218
70 % 29 42 1257
50 % 30 46 1129
40 % 30 46 1140
30 % 30 85 609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.