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The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Sequence Clustering and Redundancy Reduction Results
3CC2
Sequence Clusters for the Sequence Entities in PDB 3CC2
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 569
95% 9 68 465
90% 9 68 488
70% 9 68 526
50% 9 119 242
40% 9 121 264
30% 9 121 280
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 289
95% 9 74 416
90% 9 74 441
70% 9 74 470
50% 9 74 519
40% 10 77 524
30% 10 78 520
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 44 663
95% 9 68 473
90% 9 68 495
70% 9 68 535
50% 9 121 239
40% 9 121 265
30% 12 335 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 288
95% 9 74 415
90% 9 74 440
70% 9 74 469
50% 9 74 515
40% 9 74 557
30% 11 327 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1544
95% 8 47 825
90% 8 47 857
70% 9 68 527
50% 9 119 243
40% 9 119 271
30% 9 119 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 286
95% 9 74 413
90% 9 74 438
70% 9 74 467
50% 9 76 494
40% 9 76 533
30% 9 78 518
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 324
95% 9 68 475
90% 9 68 498
70% 9 68 538
50% 9 70 573
40% 9 70 607
30% 9 70 608
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 578
95% 9 68 471
90% 9 68 493
70% 9 68 533
50% 9 68 607
40% 9 70 605
30% 9 71 588
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 326
95% 9 68 477
90% 9 68 500
70% 9 68 540
50% 9 70 577
40% 9 70 612
30% 9 71 591
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 335
95% 9 68 469
90% 9 68 491
70% 9 68 531
50% 9 68 604
40% 9 68 639
30% 9 122 278
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 292
95% 9 74 418
90% 9 74 443
70% 9 74 473
50% 9 76 495
40% 9 78 515
30% 11 286 71
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 332
95% 9 74 407
90% 9 74 432
70% 9 74 463
50% 9 74 509
40% 9 125 252
30% 9 125 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 291
95% 9 74 417
90% 9 74 442
70% 9 74 472
50% 9 128 220
40% 9 128 247
30% 9 128 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 70 313
95% 9 70 453
90% 9 70 474
70% 9 70 510
50% 9 70 578
40% 9 70 613
30% 9 70 611
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 293
95% 9 74 419
90% 9 74 444
70% 9 74 474
50% 9 74 520
40% 9 74 560
30% 9 74 555
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 322
95% 9 68 470
90% 9 68 492
70% 9 68 532
50% 9 68 605
40% 9 70 604
30% 9 71 587
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 328
95% 9 68 479
90% 9 68 502
70% 9 68 542
50% 9 68 611
40% 9 68 644
30% 9 68 638
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 63 353
95% 9 63 523
90% 9 63 553
70% 9 63 599
50% 9 63 673
40% 9 63 701
30% 9 63 703
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 2316
95% 1 17 2922
90% 1 17 2967
70% 1 17 2973
50% 1 17 2933
40% 1 17 2858
30% 1 17 2664
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 330
95% 9 68 481
90% 9 68 504
70% 9 68 544
50% 9 69 595
40% 9 69 629
30% 9 69 626
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 585
95% 9 68 482
90% 9 68 505
70% 9 68 545
50% 9 121 240
40% 9 121 266
30% 9 121 282
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 327
95% 9 68 478
90% 9 68 501
70% 9 68 541
50% 9 68 610
40% 9 68 643
30% 9 120 286
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1538
95% 9 74 411
90% 9 74 436
70% 9 74 466
50% 9 74 511
40% 9 76 531
30% 9 77 525
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 287
95% 9 74 414
90% 9 74 439
70% 9 74 468
50% 9 74 513
40% 9 126 251
30% 9 126 268
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 321
95% 9 68 468
90% 9 68 490
70% 9 68 530
50% 9 68 603
40% 9 120 268
30% 12 330 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 580
95% 8 47 833
90% 9 68 497
70% 9 68 537
50% 19 95 309
40% 24 105 292
30% 24 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1799
95% 8 64 508
90% 8 64 536
70% 8 64 580
50% 8 64 652
40% 8 64 685
30% 8 65 678
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 573
95% 8 47 827
90% 8 47 859
70% 8 47 891
50% 9 74 514
40% 9 79 503
30% 9 79 511
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 42 697
95% 8 42 970
90% 8 42 989
70% 8 42 1019
50% 8 43 1037
40% 8 43 1063
30% 8 56 803
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.