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The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Sequence Clustering and Redundancy Reduction Results
3CC2
Sequence Clusters for the Sequence Entities in PDB 3CC2
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 46 510
95% 9 67 462
90% 9 67 485
70% 9 67 518
50% 9 102 332
40% 9 104 347
30% 9 104 358
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 277
95% 9 74 396
90% 9 74 420
70% 9 74 445
50% 9 74 494
40% 10 77 495
30% 10 78 502
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 44 547
95% 9 68 449
90% 9 68 471
70% 9 68 502
50% 9 105 320
40% 9 105 344
30% 10 402 56
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 276
95% 9 74 395
90% 9 74 419
70% 9 74 444
50% 9 74 493
40% 9 74 523
30% 9 394 62
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1374
95% 8 47 731
90% 8 47 758
70% 9 68 495
50% 9 103 330
40% 9 103 353
30% 9 103 364
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 274
95% 9 74 393
90% 9 74 417
70% 9 74 442
50% 9 76 476
40% 9 76 504
30% 9 78 499
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 312
95% 9 68 451
90% 9 68 474
70% 9 68 505
50% 9 70 531
40% 9 70 557
30% 9 70 562
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 499
95% 9 68 447
90% 9 68 469
70% 9 68 500
50% 9 68 556
40% 9 70 556
30% 9 71 547
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 315
95% 9 68 453
90% 9 68 476
70% 9 68 507
50% 9 70 533
40% 9 70 560
30% 9 71 549
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 326
95% 9 68 445
90% 9 68 467
70% 9 68 498
50% 9 68 553
40% 9 68 584
30% 9 106 349
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 281
95% 9 74 398
90% 9 74 422
70% 9 74 447
50% 9 76 477
40% 9 78 486
30% 9 369 73
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 323
95% 9 74 388
90% 9 74 413
70% 9 74 439
50% 9 74 488
40% 9 109 318
30% 9 109 332
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 280
95% 9 74 397
90% 9 74 421
70% 9 74 446
50% 9 112 286
40% 9 112 310
30% 9 112 327
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 70 302
95% 9 70 429
90% 9 70 449
70% 9 70 478
50% 9 70 534
40% 9 70 561
30% 9 70 563
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 282
95% 9 74 399
90% 9 74 423
70% 9 74 448
50% 9 74 495
40% 9 74 525
30% 9 74 527
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 310
95% 9 68 446
90% 9 68 468
70% 9 68 499
50% 9 68 554
40% 9 70 555
30% 9 71 546
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 317
95% 9 68 455
90% 9 68 478
70% 9 68 509
50% 9 68 560
40% 9 68 589
30% 9 68 585
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 63 345
95% 9 63 497
90% 9 63 520
70% 9 63 557
50% 9 63 606
40% 9 63 632
30% 9 63 634
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 2109
95% 1 17 2674
90% 1 17 2726
70% 1 17 2742
50% 1 17 2761
40% 1 17 2705
30% 1 17 2518
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 319
95% 9 68 457
90% 9 68 480
70% 9 68 511
50% 9 69 546
40% 9 69 576
30% 9 69 576
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 503
95% 9 68 458
90% 9 68 481
70% 9 68 512
50% 9 105 323
40% 9 105 346
30% 9 105 357
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 316
95% 9 68 454
90% 9 68 477
70% 9 68 508
50% 9 68 559
40% 9 68 588
30% 9 104 361
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1369
95% 9 74 391
90% 9 74 415
70% 9 74 441
50% 9 74 490
40% 9 76 503
30% 9 77 505
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 275
95% 9 74 394
90% 9 74 418
70% 9 74 443
50% 9 74 491
40% 9 109 321
30% 9 109 335
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 309
95% 9 68 444
90% 9 68 466
70% 9 68 497
50% 9 68 552
40% 9 104 349
30% 10 397 61
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 501
95% 8 47 740
90% 9 68 473
70% 9 68 504
50% 19 97 279
40% 23 106 271
30% 23 108 290
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1607
95% 8 64 485
90% 8 64 508
70% 8 64 542
50% 8 64 593
40% 8 64 621
30% 8 65 614
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 497
95% 8 47 733
90% 8 47 760
70% 8 47 797
50% 9 74 492
40% 9 78 483
30% 9 78 501
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 42 579
95% 8 42 834
90% 8 42 859
70% 8 42 892
50% 8 43 923
40% 8 43 949
30% 8 55 733
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.