Sequence Similarity Clusters for the Entities in PDB 3CC2

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 47 764
95 % 9 68 654
90 % 9 68 682
70 % 9 68 726
50 % 9 171 206
40 % 9 173 225
30 % 9 173 232
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 418
95 % 9 74 587
90 % 9 74 617
70 % 9 74 649
50 % 9 74 697
40 % 10 77 700
30 % 10 78 686
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 827
95 % 9 68 661
90 % 9 68 690
70 % 9 68 736
50 % 9 176 200
40 % 9 176 221
30 % 12 510 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 417
95 % 9 74 586
90 % 9 74 616
70 % 9 74 646
50 % 9 74 693
40 % 9 74 732
30 % 11 492 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1947
95 % 8 47 1055
90 % 8 47 1074
70 % 9 68 728
50 % 9 172 207
40 % 9 172 231
30 % 9 172 236
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 415
95 % 9 74 584
90 % 9 74 614
70 % 9 74 643
50 % 9 76 665
40 % 9 76 708
30 % 9 79 675
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 470
95 % 9 68 662
90 % 9 68 692
70 % 9 68 738
50 % 9 70 757
40 % 9 70 793
30 % 9 70 784
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 47 769
95 % 9 68 660
90 % 9 68 688
70 % 9 68 734
50 % 9 68 784
40 % 9 72 759
30 % 9 72 751
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 472
95 % 9 68 665
90 % 9 68 694
70 % 9 68 741
50 % 9 70 759
40 % 9 70 795
30 % 9 71 766
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 67 486
95 % 9 68 658
90 % 9 68 686
70 % 9 68 731
50 % 9 68 781
40 % 9 68 816
30 % 9 175 230
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 422
95 % 9 74 590
90 % 9 74 620
70 % 9 74 652
50 % 9 76 669
40 % 9 78 689
30 % 11 399 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 67 483
95 % 9 74 575
90 % 9 74 606
70 % 9 74 639
50 % 9 74 687
40 % 9 180 212
30 % 9 180 222
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 421
95 % 9 74 589
90 % 9 74 619
70 % 9 74 651
50 % 9 180 196
40 % 9 180 215
30 % 9 180 225
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 70 449
95 % 9 70 632
90 % 9 70 661
70 % 9 70 710
50 % 9 70 760
40 % 9 70 798
30 % 9 70 788
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 423
95 % 9 74 591
90 % 9 74 621
70 % 9 74 653
50 % 9 74 698
40 % 9 74 735
30 % 9 74 727
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 468
95 % 9 68 659
90 % 9 68 687
70 % 9 68 732
50 % 9 68 782
40 % 9 70 790
30 % 9 71 763
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 474
95 % 9 68 667
90 % 9 68 696
70 % 9 68 743
50 % 9 68 787
40 % 9 68 820
30 % 9 68 809
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 63 542
95 % 9 63 753
90 % 9 63 781
70 % 9 63 824
50 % 9 63 866
40 % 9 63 889
30 % 9 63 876
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 2879
95 % 1 17 3611
90 % 1 17 3655
70 % 1 17 3604
50 % 1 17 3530
40 % 1 17 3406
30 % 1 17 3194
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 476
95 % 9 68 670
90 % 9 68 699
70 % 9 68 747
50 % 9 69 769
40 % 9 69 809
30 % 9 69 802
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 47 775
95 % 9 68 671
90 % 9 68 700
70 % 9 68 748
50 % 9 173 203
40 % 9 173 226
30 % 9 173 233
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 473
95 % 9 68 666
90 % 9 68 695
70 % 9 68 742
50 % 9 68 786
40 % 9 68 819
30 % 9 169 240
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1937
95 % 9 74 580
90 % 9 74 612
70 % 9 74 642
50 % 9 74 689
40 % 9 76 706
30 % 10 78 683
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 74 416
95 % 9 74 585
90 % 9 74 615
70 % 9 74 644
50 % 9 74 691
40 % 10 180 214
30 % 10 180 224
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 68 467
95 % 9 68 657
90 % 9 68 685
70 % 9 68 730
50 % 9 68 780
40 % 9 174 224
30 % 12 501 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 47 770
95 % 8 47 1059
90 % 9 68 691
70 % 9 68 737
50 % 19 105 322
40 % 24 122 278
30 % 24 124 279
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 2268
95 % 8 64 733
90 % 8 64 762
70 % 8 64 803
50 % 8 64 850
40 % 8 64 874
30 % 8 65 849
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 47 767
95 % 8 47 1057
90 % 8 47 1077
70 % 8 47 1114
50 % 9 74 692
40 % 9 79 677
30 % 9 79 677
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 42 877
95 % 8 42 1193
90 % 8 42 1219
70 % 8 42 1258
50 % 9 46 1130
40 % 9 46 1140
30 % 9 85 609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.