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An Information Portal to 108263 Biological Macromolecular Structures

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Sequence Clustering and Redundancy Reduction Results
3CC2
Sequence Clusters for the Sequence Entities in PDB 3CC2
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 568
95% 9 68 464
90% 9 68 487
70% 9 68 525
50% 9 119 241
40% 9 121 262
30% 9 121 279
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 289
95% 9 74 416
90% 9 74 440
70% 9 74 469
50% 9 74 518
40% 10 77 523
30% 10 78 519
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 44 661
95% 9 68 472
90% 9 68 494
70% 9 68 534
50% 9 121 237
40% 9 121 263
30% 12 334 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 288
95% 9 74 415
90% 9 74 439
70% 9 74 468
50% 9 74 515
40% 9 74 556
30% 11 326 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1543
95% 8 47 824
90% 8 47 857
70% 9 68 526
50% 9 119 242
40% 9 119 270
30% 9 119 287
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 286
95% 9 74 413
90% 9 74 437
70% 9 74 466
50% 9 76 494
40% 9 76 532
30% 9 78 517
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 324
95% 9 68 474
90% 9 68 497
70% 9 68 537
50% 9 70 573
40% 9 70 606
30% 9 70 607
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 577
95% 9 68 470
90% 9 68 492
70% 9 68 532
50% 9 68 607
40% 9 70 604
30% 9 71 587
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 326
95% 9 68 476
90% 9 68 499
70% 9 68 539
50% 9 70 577
40% 9 70 611
30% 9 71 590
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 335
95% 9 68 468
90% 9 68 490
70% 9 68 530
50% 9 68 604
40% 9 68 638
30% 9 122 278
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 292
95% 9 74 418
90% 9 74 442
70% 9 74 472
50% 9 76 495
40% 9 78 514
30% 11 285 71
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 332
95% 9 74 407
90% 9 74 431
70% 9 74 462
50% 9 74 509
40% 9 125 252
30% 9 125 270
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 291
95% 9 74 417
90% 9 74 441
70% 9 74 471
50% 9 128 220
40% 9 128 247
30% 9 128 261
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 70 313
95% 9 70 452
90% 9 70 473
70% 9 70 509
50% 9 70 578
40% 9 70 612
30% 9 70 610
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 293
95% 9 74 419
90% 9 74 443
70% 9 74 473
50% 9 74 519
40% 9 74 558
30% 9 74 554
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 322
95% 9 68 469
90% 9 68 491
70% 9 68 531
50% 9 68 605
40% 9 70 603
30% 9 71 586
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 328
95% 9 68 478
90% 9 68 501
70% 9 68 541
50% 9 68 611
40% 9 68 643
30% 9 68 637
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 63 353
95% 9 63 522
90% 9 63 552
70% 9 63 598
50% 9 63 673
40% 9 63 700
30% 9 63 701
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 2316
95% 1 17 2919
90% 1 17 2963
70% 1 17 2968
50% 1 17 2931
40% 1 17 2855
30% 1 17 2662
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 330
95% 9 68 480
90% 9 68 503
70% 9 68 543
50% 9 69 595
40% 9 69 628
30% 9 69 625
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 584
95% 9 68 481
90% 9 68 504
70% 9 68 544
50% 9 121 238
40% 9 121 264
30% 9 121 281
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 327
95% 9 68 477
90% 9 68 500
70% 9 68 540
50% 9 68 610
40% 9 68 642
30% 9 120 286
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1537
95% 9 74 411
90% 9 74 435
70% 9 74 465
50% 9 74 511
40% 9 76 530
30% 9 77 524
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 287
95% 9 74 414
90% 9 74 438
70% 9 74 467
50% 9 74 513
40% 9 126 251
30% 9 126 268
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 321
95% 9 68 467
90% 9 68 489
70% 9 68 529
50% 9 68 603
40% 9 120 267
30% 12 329 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 579
95% 8 47 833
90% 9 68 496
70% 9 68 536
50% 19 95 309
40% 24 105 292
30% 24 107 308
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1799
95% 8 64 507
90% 8 64 534
70% 8 64 579
50% 8 64 652
40% 8 64 684
30% 8 65 677
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 572
95% 8 47 826
90% 8 47 859
70% 8 47 891
50% 9 74 514
40% 9 79 502
30% 9 79 510
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 42 696
95% 8 42 970
90% 8 42 989
70% 8 42 1019
50% 8 43 1036
40% 8 43 1062
30% 8 56 803
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.