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The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Sequence Clustering and Redundancy Reduction Results
3CC2
Sequence Clusters for the Sequence Entities in PDB 3CC2
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 593
95% 9 68 481
90% 9 68 504
70% 9 68 554
50% 9 126 235
40% 9 128 255
30% 9 128 270
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 293
95% 9 74 427
90% 9 74 453
70% 9 74 491
50% 9 74 560
40% 10 77 562
30% 10 78 556
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 44 686
95% 9 68 489
90% 9 68 512
70% 9 68 562
50% 9 128 228
40% 9 128 257
30% 12 366 45
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 292
95% 9 74 426
90% 9 74 452
70% 9 74 488
50% 9 74 557
40% 9 74 598
30% 11 358 50
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1589
95% 8 47 857
90% 8 47 893
70% 9 68 555
50% 9 126 236
40% 9 126 264
30% 9 126 279
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 290
95% 9 74 423
90% 9 74 450
70% 9 74 485
50% 9 76 534
40% 9 76 576
30% 9 78 553
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 331
95% 9 68 491
90% 9 68 515
70% 9 68 565
50% 9 70 613
40% 9 70 650
30% 9 70 646
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 602
95% 9 68 487
90% 9 68 510
70% 9 68 560
50% 9 68 644
40% 9 70 647
30% 9 71 628
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 332
95% 9 68 492
90% 9 68 516
70% 9 68 566
50% 9 70 615
40% 9 70 652
30% 9 71 630
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 343
95% 9 68 485
90% 9 68 508
70% 9 68 558
50% 9 68 641
40% 9 68 674
30% 9 129 268
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 299
95% 9 74 431
90% 9 74 457
70% 9 74 494
50% 9 76 538
40% 9 78 551
30% 11 310 61
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 339
95% 9 74 416
90% 9 74 443
70% 9 74 481
50% 9 74 550
40% 9 132 248
30% 9 132 262
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 295
95% 9 74 429
90% 9 74 455
70% 9 74 492
50% 9 135 218
40% 9 135 242
30% 9 135 257
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 70 320
95% 9 70 467
90% 9 70 490
70% 9 70 539
50% 9 70 616
40% 9 70 653
30% 9 70 648
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 301
95% 9 74 432
90% 9 74 458
70% 9 74 495
50% 9 74 564
40% 9 74 603
30% 9 74 598
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 329
95% 9 68 486
90% 9 68 509
70% 9 68 559
50% 9 68 642
40% 9 70 646
30% 9 71 627
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 334
95% 9 68 494
90% 9 68 518
70% 9 68 568
50% 9 68 648
40% 9 68 678
30% 9 68 677
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 63 366
95% 9 63 540
90% 9 63 569
70% 9 63 621
50% 9 63 709
40% 9 63 736
30% 9 63 737
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 2428
95% 1 17 3068
90% 1 17 3114
70% 1 17 3107
50% 1 17 3024
40% 1 17 2940
30% 1 17 2752
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 336
95% 9 68 496
90% 9 68 520
70% 9 68 570
50% 9 69 633
40% 9 69 669
30% 9 69 666
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 609
95% 9 68 497
90% 9 68 521
70% 9 68 571
50% 9 128 229
40% 9 128 258
30% 9 128 271
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 333
95% 9 68 493
90% 9 68 517
70% 9 68 567
50% 9 68 647
40% 9 68 677
30% 9 127 275
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1584
95% 9 74 420
90% 9 74 447
70% 9 74 484
50% 9 74 552
40% 9 76 572
30% 9 77 561
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 291
95% 9 74 425
90% 9 74 451
70% 9 74 486
50% 9 74 555
40% 10 134 244
30% 10 134 259
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 328
95% 9 68 484
90% 9 68 507
70% 9 68 557
50% 9 68 640
40% 9 127 261
30% 12 361 48
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 604
95% 8 47 867
90% 9 68 514
70% 9 68 564
50% 19 95 328
40% 24 105 302
30% 24 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1864
95% 8 64 527
90% 8 64 554
70% 8 64 602
50% 8 64 693
40% 8 64 720
30% 8 65 715
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 597
95% 8 47 860
90% 8 47 896
70% 8 47 934
50% 9 74 556
40% 9 79 538
30% 9 79 544
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 42 724
95% 8 42 1005
90% 8 42 1025
70% 8 42 1061
50% 8 43 1080
40% 8 43 1102
30% 8 62 748
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.