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The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Sequence Clustering and Redundancy Reduction Results
3CC2
Sequence Clusters for the Sequence Entities in PDB 3CC2
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 46 549
95% 9 67 469
90% 9 67 494
70% 9 67 532
50% 9 136 242
40% 9 138 265
30% 9 138 285
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 284
95% 9 74 402
90% 9 74 427
70% 9 74 454
50% 9 74 499
40% 10 77 504
30% 10 78 509
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 44 618
95% 9 68 457
90% 9 68 481
70% 9 68 516
50% 9 139 234
40% 9 139 262
30% 10 454 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 283
95% 9 74 401
90% 9 74 426
70% 9 74 453
50% 9 74 498
40% 9 74 535
30% 9 446 54
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1471
95% 8 47 776
90% 8 47 808
70% 9 68 509
50% 9 137 238
40% 9 137 272
30% 9 137 292
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 281
95% 9 74 399
90% 9 74 424
70% 9 74 451
50% 9 76 480
40% 9 76 514
30% 9 78 506
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 319
95% 9 68 459
90% 9 68 484
70% 9 68 519
50% 9 70 544
40% 9 70 578
30% 9 70 578
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 532
95% 9 68 455
90% 9 68 479
70% 9 68 514
50% 9 68 573
40% 9 70 577
30% 9 71 559
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 322
95% 9 68 461
90% 9 68 486
70% 9 68 521
50% 9 70 546
40% 9 70 581
30% 9 71 562
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 332
95% 9 68 452
90% 9 68 477
70% 9 68 512
50% 9 68 570
40% 9 68 609
30% 9 140 277
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 287
95% 9 74 404
90% 9 74 429
70% 9 74 457
50% 9 76 482
40% 9 78 496
30% 9 387 69
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 67 329
95% 9 74 394
90% 9 74 420
70% 9 74 448
50% 9 74 493
40% 9 143 251
30% 9 143 266
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 286
95% 9 74 403
90% 9 74 428
70% 9 74 456
50% 9 146 216
40% 9 146 245
30% 9 146 263
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 70 307
95% 9 70 438
90% 9 70 460
70% 9 70 494
50% 9 70 548
40% 9 70 583
30% 9 70 580
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 288
95% 9 74 405
90% 9 74 430
70% 9 74 458
50% 9 74 502
40% 9 74 538
30% 9 74 539
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 317
95% 9 68 453
90% 9 68 478
70% 9 68 513
50% 9 68 571
40% 9 70 576
30% 9 71 558
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 324
95% 9 68 463
90% 9 68 488
70% 9 68 523
50% 9 68 578
40% 9 68 616
30% 9 68 608
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 63 348
95% 9 63 508
90% 9 63 532
70% 9 63 572
50% 9 63 649
40% 9 63 675
30% 9 63 675
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 2220
95% 1 17 2792
90% 1 17 2836
70% 1 17 2841
50% 1 17 2820
40% 1 17 2758
30% 1 17 2568
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 326
95% 9 68 465
90% 9 68 490
70% 9 68 525
50% 9 69 561
40% 9 69 601
30% 9 69 597
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 542
95% 9 68 466
90% 9 68 491
70% 9 68 526
50% 9 139 236
40% 9 139 264
30% 9 139 280
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 323
95% 9 68 462
90% 9 68 487
70% 9 68 522
50% 9 68 577
40% 9 68 615
30% 9 138 287
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 23 1464
95% 9 74 397
90% 9 74 422
70% 9 74 450
50% 9 74 495
40% 9 76 513
30% 9 77 512
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 74 282
95% 9 74 400
90% 9 74 425
70% 9 74 452
50% 9 74 496
40% 9 143 252
30% 9 143 268
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 68 316
95% 9 68 451
90% 9 68 476
70% 9 68 511
50% 9 68 568
40% 9 138 266
30% 10 449 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 538
95% 8 47 785
90% 9 68 483
70% 9 68 518
50% 19 97 296
40% 23 106 285
30% 23 108 303
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1721
95% 8 64 495
90% 8 64 518
70% 8 64 559
50% 8 64 628
40% 8 64 661
30% 8 65 648
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 47 529
95% 8 47 778
90% 8 47 810
70% 8 47 853
50% 9 74 497
40% 9 78 493
30% 9 78 508
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 42 661
95% 8 42 919
90% 8 42 940
70% 8 42 975
50% 8 43 996
40% 8 43 1026
30% 8 55 790
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.