Sequence Similarity Clusters for the Entities in PDB 3BRD

Entity #1 | Chains: B
DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform a protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19553
95 % 1 4 17845 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 1 4 17407
70 % 1 4 16134
50 % 4 12 4564
40 % 4 12 4321
30 % 4 12 3902
Entity #4 | Chains: D
Protein lin-12 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64038
95 % 1 1 51998
90 % 1 1 49285
70 % 1 1 43123
50 % 1 1 36569
40 % 1 1 31985
30 % 1 1 26759

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BRD 4 D Protein lin-12 RAM peptide 6239