Sequence Similarity Clusters for the Entities in PDB 3BRD

Entity #1 | Chains: B
DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform a protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19168
95 % 1 4 17502 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 1 4 17084
70 % 1 4 15838
50 % 4 12 4476
40 % 4 12 4225
30 % 4 12 3819
Entity #4 | Chains: D
Protein lin-12 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62962
95 % 1 1 51183
90 % 1 1 48557
70 % 1 1 42530
50 % 1 1 36075
40 % 1 1 31579
30 % 1 1 26400

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BRD 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
2 3BRF 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
3 1TTU 3 A lin-12 And Glp-1 transcriptional regulator conserved core (residues 192-663) 6239
4 2FO1 3 A Lin-12 and glp-1 phenotype protein 1, isoform b CORE (RESIDUES 192-663) 6239