Sequence Similarity Clusters for the Entities in PDB 3BRD

Entity #1 | Chains: B
DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform a protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 15056
95 % 1 4 13909
90 % 1 4 13649
70 % 1 4 12824
50 % 3 11 3848
40 % 3 11 3679
30 % 3 11 3410
Entity #4 | Chains: D
Protein lin-12 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66837
95 % 1 1 46660
90 % 1 1 44425
70 % 1 1 39186
50 % 1 1 33600
40 % 1 1 29669
30 % 1 1 25168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.