Sequence Similarity Clusters for the Entities in PDB 3BAB

Entity #1 | Chains: A
DNA ligase protein, length: 332 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 4998
95 % 10 11 5320 Flexibility: High
Max RMSD: 21.0, Avg RMSD: 10.0
PDBFlex
90 % 10 11 5347
70 % 10 11 5214
50 % 24 28 1811
40 % 24 29 1755
30 % 24 29 1717

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4LH6 1 A DNA ligase Adenylation domain, UNP residues 1-323 1351 6.5.1.2 | Details
2 1TA8 1 A DNA ligase, NAD-dependent Adenylation domain 1351 6.5.1.2 | Details
3 3BA9 1 A DNA ligase 1351 6.5.1.2 | Details
4 3BAA 1 A DNA ligase Adenylation Domain 1351 6.5.1.2 | Details
5 3BA8 1 A DNA ligase Adenylation Domain 1351 6.5.1.2 | Details
6 4LH7 1 A DNA ligase Adenylation domain, UNP residues 1-323 1351 6.5.1.2 | Details
7 4EFE 1 A DNA ligase 1351 6.5.1.2 | Details
8 4EEQ 1 A DNA ligase 1351 6.5.1.2 | Details
9 4EFB 1 A DNA ligase 1351 6.5.1.2 | Details
10 3BAB 1 A DNA ligase Adenylation Domain 1351 6.5.1.2 | Details
11 1TAE 1 A, B, C, D DNA ligase, NAD-dependent Adenylation domain 1351 6.5.1.2 | Details