Sequence Similarity Clusters for the Entities in PDB 3AL4

Entity #1 | Chains: A,C,E,G,I,K
Hemagglutinin protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 1577
95 % 14 19 542 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 0.8
PDBFlex
90 % 14 20 546
70 % 46 63 186
50 % 146 174 79
40 % 277 330 17
30 % 285 338 27
Entity #2 | Chains: B,D,F,H,J,L
Hemagglutinin protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 647
95 % 45 60 163 Flexibility: Low
Max RMSD: 5.9, Avg RMSD: 1.2
PDBFlex
90 % 45 60 173
70 % 145 174 31
50 % 273 325 10
40 % 277 335 16
30 % 277 335 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures