Sequence Similarity Clusters for the Entities in PDB 3AL4

Entity #1 | Chains: A,C,E,G,I,K
Hemagglutinin protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4911
95 % 14 19 548 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 0.8
PDBFlex
90 % 14 20 555
70 % 46 63 191
50 % 147 175 80
40 % 287 340 17
30 % 295 348 29
Entity #2 | Chains: B,D,F,H,J,L
Hemagglutinin protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 16 568
95 % 14 19 540 Flexibility: Low
Max RMSD: 5.9, Avg RMSD: 1.2
PDBFlex
90 % 45 60 209
70 % 146 175 33
50 % 283 335 11
40 % 287 345 16
30 % 291 351 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures