Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 322
95 % 48 134 101
90 % 48 137 102
70 % 48 138 104
50 % 49 141 136
40 % 49 141 152
30 % 49 141 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 125 83
95 % 52 144 75
90 % 53 149 74
70 % 53 149 88
50 % 53 149 126
40 % 53 149 145
30 % 53 149 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 247
95 % 40 123 111
90 % 43 132 104
70 % 44 136 97
50 % 49 146 124
40 % 49 146 142
30 % 49 146 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 266
95 % 40 122 113
90 % 40 125 116
70 % 42 131 123
50 % 42 131 151
40 % 42 131 170
30 % 42 131 184
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5B31 4 D, H Histone H2B type 1-J 9606
13 3UTB 4 D, H Histone H2B 1.1 8355
14 1M19 5 D, H Histone H2B.1 8355
15 5AVB 4 D, H Histone H2B type 1-J 9606
16 5AVC 4 D, H Histone H2B type 1-J 9606
17 5AV5 4 D, H Histone H2B type 1-J 9606
18 3C1B 4 D, H Histone 2, H2bf 8364
19 5F99 4 D, H Histone H2B 1.1 8355
20 3UT9 4 D, H Histone H2B 1.1 8355
21 5B32 4 D, H Histone H2B type 1-J 9606
22 4WU8 6 D, H Histone H2B 1.1 8355
23 1P3I 5 D, H Histone H2B 8355
24 3MGR 4 D, H Histone H2B 1.1 8355
25 1F66 5 D, H HISTONE H2B 8355
26 3AZG 4 D, H Histone H2B type 1-J 9606
27 1M18 5 D, H Histone H2B.1 8355
28 5B2J 4 D, H Histone H2B type 1-J 9606
29 1P3L 5 D, H Histone H2B 8355
30 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
31 5B0Y 4 D, H Histone H2B type 1-J 9606
32 2CV5 5 D, H Histone H2B K 9606
33 5CP6 6 D, H Histone H2B 1.1 8355
34 3MGP 4 D, H Histone H2B 1.1 8355
35 3MVD 4 D, H Histone H2B 1.1 8355
36 4J8U 4 D, H Histone H2B 1.1 8355
37 4WU9 4 D, H Histone H2B 1.1 8355
38 3REH 4 D, H Histone H2B 1.1 8355
39 3AZL 4 D, H Histone H2B type 1-J 9606
40 3AFA 4 D, H Histone H2B type 1-J 9606
41 5E5A 5 D, H Histone H2B 1.1 8355
42 3REJ 4 D, H Histone H2B 1.1 8355
43 3AZF 4 D, H Histone H2B type 1-J 9606
44 1P3P 5 D, H Histone H2B 8355
45 3AV1 4 D, H Histone H2B type 1-J 9606
46 1M1A 5 D, H Histone H2B.1 8355
47 5CPK 4 D, H Histone H2B type 1-J 9606
48 5AY8 4 D, H Histone H2B type 1-J 9606
49 3MNN 4 D, H Histone H2B 1.1 8355
50 1P3G 5 D, H Histone H2B 8355
51 4J8W 4 D, H Histone H2B 1.1 8355
52 1P34 5 D, H Histone H2B 8355
53 3MGQ 4 D, H Histone H2B 1.1 8355
54 3WTP 4 D, H Histone H2B type 1-J 9606
55 2NZD 6 D, H Histone H2B 8355
56 3A6N 4 D, H Histone H2B type 1-J 9606
57 3LJA 4 D, H Histone H2B 1.1 8355
58 3AZI 4 D, H Histone H2B type 1-J 9606
59 3TU4 4 D, H Histone H2B 1.1 8355
60 1P3O 5 D, H Histone H2B 8355
61 1KX4 5 D, H histone H2B.2 8355
62 3AZN 4 D, H Histone H2B type 1-J 9606
63 1P3M 5 D, H Histone H2B 8355
64 4J8V 4 D, H Histone H2B 1.1 8355
65 5B33 4 D, H Histone H2B type 1-J 9606
66 3X1S 4 D, H Histone H2B type 1-B 9606
67 3LZ0 4 D, H Histone H2B 1.1 8355
68 1P3F 5 D, H Histone H2B 8355
69 1P3K 5 D, H Histone H2B 8355
70 5B2I 4 D, H Histone H2B type 1-J 9606
71 1P3A 5 D, H Histone H2B 8355
72 3LZ1 4 D, H Histone H2B 1.1 8355
73 2F8N 4 D Histone 3, H2ba 10090
74 2F8N 5 H Histone H2B.1 8355
75 4Z5T 4 D, H Histone H2B type 1-J 9606
76 1U35 5 D, H histone 3, H2ba 10090
77 3AV2 4 D, H Histone H2B type 1-J 9606
78 3AYW 4 D, H Histone H2B type 1-J 9606
79 3AZJ 4 D, H Histone H2B type 1-J 9606
80 3REK 4 D, H Histone H2B 1.1 8355
81 4KGC 4 D, H Histone H2B 1.1 8355
82 1ZLA 5 D, H histone H2B 8355
83 3REL 4 D, H Histone H2B 1.1 8355
84 3REI 4 D, H Histone H2B 1.1 8355
85 1P3B 5 D, H Histone H2B 8355
86 3AZK 4 D, H Histone H2B type 1-J 9606
87 4J8X 4 D, H Histone H2B 1.1 8355
88 3LEL 4 D, H, N, R Histone H2B 1.1 8355
89 3KUY 4 D, H Histone H2B 8355
90 4R8P 4 D, H Histone H2B 1.1 8355
91 3AZM 4 D, H Histone H2B type 1-J 9606
92 3X1U 5 D, H Histone H2B type 1-B 9606
93 3MGS 4 D, H Histone H2B 1.1 8355
94 3WA9 4 D, H Histone H2B type 1-J 9606
95 3C1C 4 D, H Histone 2, H2bf 8364
96 3AZH 4 D, H Histone H2B type 1-J 9606
97 5B40 4 D, H Histone H2B type 1-J 9606
98 3WAA 4 D, H Histone H2B type 1-J 9606
99 5CPI 4 D, H Histone H2B type 1-J 9606
100 3W99 4 D, H Histone H2B type 1-J 9606
101 3AZE 4 D, H Histone H2B type 1-J 9606
102 3W96 4 D, H Histone H2B type 1-J 9606
103 5CPJ 4 D, H Histone H2B type 1-J 9606
104 5B24 4 D, H Histone H2B type 1-J 9606
105 2HIO 2 B PROTEIN (HISTONE H2B) 9031
106 4LD9 4 D, H Histone H2B 1.1 8355
107 3O62 4 D, H Histone H2B 1.1 8355
108 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
109 4YM5 4 D, H Histone H2B type 1-J 9606
110 4YM6 4 D, H Histone H2B type 1-J 9606
111 2FJ7 6 D, H Histone H2B 8355
112 3W98 4 D, H Histone H2B type 1-J 9606
113 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
114 3AN2 4 D, H Histone H2B type 1-J 9606
115 3B6F 6 D, H Histone H2B 1.1 8355
116 3B6G 6 D, H Histone H2B 1.1 8355
117 3KXB 4 D, H Histone H2B 1.1 8355
118 5HQ2 4 H Histone H2B 1.1 8355
119 1ZBB 6 D, H, d, h Histone H2B.1 8355
120 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
121 2RVQ 2 D Histone H2B type 1-J 9606
122 3C9K 2 B, F Histone H2B 7 9031