Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 353
95 % 44 126 106
90 % 44 129 107
70 % 44 130 122
50 % 45 133 145
40 % 45 133 161
30 % 45 133 179
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 89
95 % 47 135 99
90 % 48 140 84
70 % 48 140 98
50 % 48 140 134
40 % 48 140 146
30 % 48 140 167
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 42 274
95 % 36 115 115
90 % 39 124 109
70 % 40 128 117
50 % 43 135 133
40 % 43 135 145
30 % 43 135 165
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 301
95 % 36 114 118
90 % 36 117 119
70 % 38 123 129
50 % 38 123 155
40 % 38 123 171
30 % 38 123 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 3UTB 4 D, H Histone H2B 1.1 8355
13 1M19 5 D, H Histone H2B.1 8355
14 5AVB 4 D, H Histone H2B type 1-J 9606
15 5AVC 4 D, H Histone H2B type 1-J 9606
16 5AV5 4 D, H Histone H2B type 1-J 9606
17 3C1B 4 D, H Histone 2, H2bf 8364
18 5F99 4 D, H Histone H2B 1.1 8355
19 3UT9 4 D, H Histone H2B 1.1 8355
20 4WU8 6 D, H Histone H2B 1.1 8355
21 1P3I 5 D, H Histone H2B 8355
22 3MGR 4 D, H Histone H2B 1.1 8355
23 1F66 5 D, H HISTONE H2B 8355
24 3AZG 4 D, H Histone H2B type 1-J 9606
25 1M18 5 D, H Histone H2B.1 8355
26 1P3L 5 D, H Histone H2B 8355
27 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
28 5B0Y 4 D, H Histone H2B type 1-J 9606
29 2CV5 5 D, H Histone H2B K 9606
30 3MGP 4 D, H Histone H2B 1.1 8355
31 3MVD 4 D, H Histone H2B 1.1 8355
32 4J8U 4 D, H Histone H2B 1.1 8355
33 4WU9 4 D, H Histone H2B 1.1 8355
34 3REH 4 D, H Histone H2B 1.1 8355
35 3AZL 4 D, H Histone H2B type 1-J 9606
36 3AFA 4 D, H Histone H2B type 1-J 9606
37 5E5A 5 D, H Histone H2B 1.1 8355
38 3REJ 4 D, H Histone H2B 1.1 8355
39 3AZF 4 D, H Histone H2B type 1-J 9606
40 1P3P 5 D, H Histone H2B 8355
41 3AV1 4 D, H Histone H2B type 1-J 9606
42 1M1A 5 D, H Histone H2B.1 8355
43 5CPK 4 D, H Histone H2B type 1-J 9606
44 5AY8 4 D, H Histone H2B type 1-J 9606
45 3MNN 4 D, H Histone H2B 1.1 8355
46 1P3G 5 D, H Histone H2B 8355
47 4J8W 4 D, H Histone H2B 1.1 8355
48 1P34 5 D, H Histone H2B 8355
49 3X1V 5 D, H Histone H2B type 1-A 10090
50 3MGQ 4 D, H Histone H2B 1.1 8355
51 3WTP 4 D, H Histone H2B type 1-J 9606
52 3X1T 5 D, H Histone H2B type 1-A 10090
53 2NZD 6 D, H Histone H2B 8355
54 3A6N 4 D, H Histone H2B type 1-J 9606
55 3LJA 4 D, H Histone H2B 1.1 8355
56 3AZI 4 D, H Histone H2B type 1-J 9606
57 3TU4 4 D, H Histone H2B 1.1 8355
58 1P3O 5 D, H Histone H2B 8355
59 1KX4 5 D, H histone H2B.2 8355
60 3AZN 4 D, H Histone H2B type 1-J 9606
61 1P3M 5 D, H Histone H2B 8355
62 4J8V 4 D, H Histone H2B 1.1 8355
63 3X1S 4 D, H Histone H2B type 1-B 9606
64 3LZ0 4 D, H Histone H2B 1.1 8355
65 1P3F 5 D, H Histone H2B 8355
66 1P3K 5 D, H Histone H2B 8355
67 1P3A 5 D, H Histone H2B 8355
68 3LZ1 4 D, H Histone H2B 1.1 8355
69 2F8N 4 D Histone 3, H2ba 10090
70 2F8N 5 H Histone H2B.1 8355
71 4Z5T 4 D, H Histone H2B type 1-J 9606
72 1U35 5 D, H histone 3, H2ba 10090
73 3AV2 4 D, H Histone H2B type 1-J 9606
74 3AYW 4 D, H Histone H2B type 1-J 9606
75 3AZJ 4 D, H Histone H2B type 1-J 9606
76 3REK 4 D, H Histone H2B 1.1 8355
77 4KGC 4 D, H Histone H2B 1.1 8355
78 1ZLA 5 D, H histone H2B 8355
79 3REL 4 D, H Histone H2B 1.1 8355
80 3REI 4 D, H Histone H2B 1.1 8355
81 1P3B 5 D, H Histone H2B 8355
82 3WKJ 4 D, H Histone H2B type 1-A 9606
83 3AZK 4 D, H Histone H2B type 1-J 9606
84 4J8X 4 D, H Histone H2B 1.1 8355
85 3LEL 4 D, H, N, R Histone H2B 1.1 8355
86 3KUY 4 D, H Histone H2B 8355
87 4R8P 4 D, H Histone H2B 1.1 8355
88 3AZM 4 D, H Histone H2B type 1-J 9606
89 3X1U 5 D, H Histone H2B type 1-B 9606
90 3MGS 4 D, H Histone H2B 1.1 8355
91 3WA9 4 D, H Histone H2B type 1-J 9606
92 3C1C 4 D, H Histone 2, H2bf 8364
93 3AZH 4 D, H Histone H2B type 1-J 9606
94 3WAA 4 D, H Histone H2B type 1-J 9606
95 5CPI 4 D, H Histone H2B type 1-J 9606
96 3W99 4 D, H Histone H2B type 1-J 9606
97 3AZE 4 D, H Histone H2B type 1-J 9606
98 3W96 4 D, H Histone H2B type 1-J 9606
99 5CPJ 4 D, H Histone H2B type 1-J 9606
100 5B24 4 D, H Histone H2B type 1-J 9606
101 2HIO 2 B PROTEIN (HISTONE H2B) 9031
102 4LD9 4 D, H Histone H2B 1.1 8355
103 3O62 4 D, H Histone H2B 1.1 8355
104 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
105 4YM5 4 D, H Histone H2B type 1-J 9606
106 4YM6 4 D, H Histone H2B type 1-J 9606
107 2FJ7 6 D, H Histone H2B 8355
108 3W98 4 D, H Histone H2B type 1-J 9606
109 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
110 3AN2 4 D, H Histone H2B type 1-J 9606
111 3B6F 6 D, H Histone H2B 1.1 8355
112 3B6G 6 D, H Histone H2B 1.1 8355
113 3KXB 4 D, H Histone H2B 1.1 8355
114 5HQ2 4 H Histone H2B 1.1 8355
115 1ZBB 6 D, H, d, h Histone H2B.1 8355
116 2RVQ 2 D Histone H2B type 1-J 9606
117 3C9K 2 B, F Histone H2B 7 9031