Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 338
95 % 46 131 105
90 % 46 134 103
70 % 46 135 116
50 % 47 138 140
40 % 47 138 157
30 % 47 138 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 122 85
95 % 50 141 80
90 % 51 146 73
70 % 51 146 87
50 % 51 146 128
40 % 51 146 144
30 % 51 146 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 120 113
90 % 41 129 106
70 % 42 133 106
50 % 45 140 127
40 % 45 140 143
30 % 45 140 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 119 116
90 % 38 122 116
70 % 40 128 125
50 % 40 128 153
40 % 40 128 171
30 % 40 128 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 3UTB 4 D, H Histone H2B 1.1 8355
13 1M19 5 D, H Histone H2B.1 8355
14 5AVB 4 D, H Histone H2B type 1-J 9606
15 5AVC 4 D, H Histone H2B type 1-J 9606
16 5AV5 4 D, H Histone H2B type 1-J 9606
17 3C1B 4 D, H Histone 2, H2bf 8364
18 5F99 4 D, H Histone H2B 1.1 8355
19 3UT9 4 D, H Histone H2B 1.1 8355
20 4WU8 6 D, H Histone H2B 1.1 8355
21 1P3I 5 D, H Histone H2B 8355
22 3MGR 4 D, H Histone H2B 1.1 8355
23 1F66 5 D, H HISTONE H2B 8355
24 3AZG 4 D, H Histone H2B type 1-J 9606
25 1M18 5 D, H Histone H2B.1 8355
26 5B2J 4 D, H Histone H2B type 1-J 9606
27 1P3L 5 D, H Histone H2B 8355
28 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
29 5B0Y 4 D, H Histone H2B type 1-J 9606
30 2CV5 5 D, H Histone H2B K 9606
31 5CP6 6 D, H Histone H2B 1.1 8355
32 3MGP 4 D, H Histone H2B 1.1 8355
33 3MVD 4 D, H Histone H2B 1.1 8355
34 4J8U 4 D, H Histone H2B 1.1 8355
35 4WU9 4 D, H Histone H2B 1.1 8355
36 3REH 4 D, H Histone H2B 1.1 8355
37 3AZL 4 D, H Histone H2B type 1-J 9606
38 3AFA 4 D, H Histone H2B type 1-J 9606
39 5E5A 5 D, H Histone H2B 1.1 8355
40 3REJ 4 D, H Histone H2B 1.1 8355
41 3AZF 4 D, H Histone H2B type 1-J 9606
42 1P3P 5 D, H Histone H2B 8355
43 3AV1 4 D, H Histone H2B type 1-J 9606
44 1M1A 5 D, H Histone H2B.1 8355
45 5CPK 4 D, H Histone H2B type 1-J 9606
46 5AY8 4 D, H Histone H2B type 1-J 9606
47 3MNN 4 D, H Histone H2B 1.1 8355
48 1P3G 5 D, H Histone H2B 8355
49 4J8W 4 D, H Histone H2B 1.1 8355
50 1P34 5 D, H Histone H2B 8355
51 3X1V 5 D, H Histone H2B type 1-A 10090
52 3MGQ 4 D, H Histone H2B 1.1 8355
53 3WTP 4 D, H Histone H2B type 1-J 9606
54 3X1T 5 D, H Histone H2B type 1-A 10090
55 2NZD 6 D, H Histone H2B 8355
56 3A6N 4 D, H Histone H2B type 1-J 9606
57 3LJA 4 D, H Histone H2B 1.1 8355
58 3AZI 4 D, H Histone H2B type 1-J 9606
59 3TU4 4 D, H Histone H2B 1.1 8355
60 1P3O 5 D, H Histone H2B 8355
61 1KX4 5 D, H histone H2B.2 8355
62 3AZN 4 D, H Histone H2B type 1-J 9606
63 1P3M 5 D, H Histone H2B 8355
64 4J8V 4 D, H Histone H2B 1.1 8355
65 3X1S 4 D, H Histone H2B type 1-B 9606
66 3LZ0 4 D, H Histone H2B 1.1 8355
67 1P3F 5 D, H Histone H2B 8355
68 1P3K 5 D, H Histone H2B 8355
69 5B2I 4 D, H Histone H2B type 1-J 9606
70 1P3A 5 D, H Histone H2B 8355
71 3LZ1 4 D, H Histone H2B 1.1 8355
72 2F8N 4 D Histone 3, H2ba 10090
73 2F8N 5 H Histone H2B.1 8355
74 4Z5T 4 D, H Histone H2B type 1-J 9606
75 1U35 5 D, H histone 3, H2ba 10090
76 3AV2 4 D, H Histone H2B type 1-J 9606
77 3AYW 4 D, H Histone H2B type 1-J 9606
78 3AZJ 4 D, H Histone H2B type 1-J 9606
79 3REK 4 D, H Histone H2B 1.1 8355
80 4KGC 4 D, H Histone H2B 1.1 8355
81 1ZLA 5 D, H histone H2B 8355
82 3REL 4 D, H Histone H2B 1.1 8355
83 3REI 4 D, H Histone H2B 1.1 8355
84 1P3B 5 D, H Histone H2B 8355
85 3WKJ 4 D, H Histone H2B type 1-A 9606
86 3AZK 4 D, H Histone H2B type 1-J 9606
87 4J8X 4 D, H Histone H2B 1.1 8355
88 3LEL 4 D, H, N, R Histone H2B 1.1 8355
89 3KUY 4 D, H Histone H2B 8355
90 4R8P 4 D, H Histone H2B 1.1 8355
91 3AZM 4 D, H Histone H2B type 1-J 9606
92 3X1U 5 D, H Histone H2B type 1-B 9606
93 3MGS 4 D, H Histone H2B 1.1 8355
94 3WA9 4 D, H Histone H2B type 1-J 9606
95 3C1C 4 D, H Histone 2, H2bf 8364
96 3AZH 4 D, H Histone H2B type 1-J 9606
97 5B40 4 D, H Histone H2B type 1-J 9606
98 3WAA 4 D, H Histone H2B type 1-J 9606
99 5CPI 4 D, H Histone H2B type 1-J 9606
100 3W99 4 D, H Histone H2B type 1-J 9606
101 3AZE 4 D, H Histone H2B type 1-J 9606
102 3W96 4 D, H Histone H2B type 1-J 9606
103 5CPJ 4 D, H Histone H2B type 1-J 9606
104 5B24 4 D, H Histone H2B type 1-J 9606
105 2HIO 2 B PROTEIN (HISTONE H2B) 9031
106 4LD9 4 D, H Histone H2B 1.1 8355
107 3O62 4 D, H Histone H2B 1.1 8355
108 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
109 4YM5 4 D, H Histone H2B type 1-J 9606
110 4YM6 4 D, H Histone H2B type 1-J 9606
111 2FJ7 6 D, H Histone H2B 8355
112 3W98 4 D, H Histone H2B type 1-J 9606
113 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
114 3AN2 4 D, H Histone H2B type 1-J 9606
115 3B6F 6 D, H Histone H2B 1.1 8355
116 3B6G 6 D, H Histone H2B 1.1 8355
117 3KXB 4 D, H Histone H2B 1.1 8355
118 5HQ2 4 H Histone H2B 1.1 8355
119 1ZBB 6 D, H, d, h Histone H2B.1 8355
120 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
121 2RVQ 2 D Histone H2B type 1-J 9606
122 3C9K 2 B, F Histone H2B 7 9031