Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 31 365
95 % 44 123 104
90 % 44 126 90
70 % 44 126 108
50 % 45 129 145
40 % 45 129 158
30 % 45 129 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 112 85
95 % 47 130 78
90 % 48 135 76
70 % 48 135 92
50 % 48 135 131
40 % 48 135 149
30 % 48 135 166
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 39 284
95 % 36 110 115
90 % 39 119 109
70 % 40 123 102
50 % 42 129 134
40 % 42 129 150
30 % 42 129 167
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 322
95 % 36 109 120
90 % 36 112 119
70 % 38 118 130
50 % 38 118 157
40 % 38 118 170
30 % 38 118 187
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 3UTB 4 D, H Histone H2B 1.1 8355
13 1M19 5 D, H Histone H2B.1 8355
14 5AVB 4 D, H Histone H2B type 1-J 9606
15 5AVC 4 D, H Histone H2B type 1-J 9606
16 5AV5 4 D, H Histone H2B type 1-J 9606
17 3C1B 4 D, H Histone 2, H2bf 8364
18 5F99 4 D, H Histone H2B 1.1 8355
19 3UT9 4 D, H Histone H2B 1.1 8355
20 4WU8 6 D, H Histone H2B 1.1 8355
21 1P3I 5 D, H Histone H2B 8355
22 3MGR 4 D, H Histone H2B 1.1 8355
23 1F66 5 D, H HISTONE H2B 8355
24 3AZG 4 D, H Histone H2B type 1-J 9606
25 1M18 5 D, H Histone H2B.1 8355
26 1P3L 5 D, H Histone H2B 8355
27 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
28 5B0Y 4 D, H Histone H2B type 1-J 9606
29 2CV5 5 D, H Histone H2B K 9606
30 3MGP 4 D, H Histone H2B 1.1 8355
31 3MVD 4 D, H Histone H2B 1.1 8355
32 4J8U 4 D, H Histone H2B 1.1 8355
33 4WU9 4 D, H Histone H2B 1.1 8355
34 3REH 4 D, H Histone H2B 1.1 8355
35 3AZL 4 D, H Histone H2B type 1-J 9606
36 3AFA 4 D, H Histone H2B type 1-J 9606
37 5E5A 5 D, H Histone H2B 1.1 8355
38 3REJ 4 D, H Histone H2B 1.1 8355
39 3AZF 4 D, H Histone H2B type 1-J 9606
40 1P3P 5 D, H Histone H2B 8355
41 3AV1 4 D, H Histone H2B type 1-J 9606
42 1M1A 5 D, H Histone H2B.1 8355
43 5CPK 4 D, H Histone H2B type 1-J 9606
44 3MNN 4 D, H Histone H2B 1.1 8355
45 1P3G 5 D, H Histone H2B 8355
46 4J8W 4 D, H Histone H2B 1.1 8355
47 1P34 5 D, H Histone H2B 8355
48 3X1V 5 D, H Histone H2B type 1-A 10090
49 3MGQ 4 D, H Histone H2B 1.1 8355
50 3WTP 4 D, H Histone H2B type 1-J 9606
51 3X1T 5 D, H Histone H2B type 1-A 10090
52 2NZD 6 D, H Histone H2B 8355
53 3A6N 4 D, H Histone H2B type 1-J 9606
54 3LJA 4 D, H Histone H2B 1.1 8355
55 3AZI 4 D, H Histone H2B type 1-J 9606
56 3TU4 4 D, H Histone H2B 1.1 8355
57 1P3O 5 D, H Histone H2B 8355
58 1KX4 5 D, H histone H2B.2 8355
59 3AZN 4 D, H Histone H2B type 1-J 9606
60 1P3M 5 D, H Histone H2B 8355
61 4J8V 4 D, H Histone H2B 1.1 8355
62 3X1S 4 D, H Histone H2B type 1-B 9606
63 3LZ0 4 D, H Histone H2B 1.1 8355
64 1P3F 5 D, H Histone H2B 8355
65 1P3K 5 D, H Histone H2B 8355
66 1P3A 5 D, H Histone H2B 8355
67 3LZ1 4 D, H Histone H2B 1.1 8355
68 2F8N 4 D Histone 3, H2ba 10090
69 2F8N 5 H Histone H2B.1 8355
70 4Z5T 4 D, H Histone H2B type 1-J 9606
71 1U35 5 D, H histone 3, H2ba 10090
72 3AV2 4 D, H Histone H2B type 1-J 9606
73 3AYW 4 D, H Histone H2B type 1-J 9606
74 3AZJ 4 D, H Histone H2B type 1-J 9606
75 3REK 4 D, H Histone H2B 1.1 8355
76 4KGC 4 D, H Histone H2B 1.1 8355
77 1ZLA 5 D, H histone H2B 8355
78 3REL 4 D, H Histone H2B 1.1 8355
79 3REI 4 D, H Histone H2B 1.1 8355
80 1P3B 5 D, H Histone H2B 8355
81 3WKJ 4 D, H Histone H2B type 1-A 9606
82 3AZK 4 D, H Histone H2B type 1-J 9606
83 4J8X 4 D, H Histone H2B 1.1 8355
84 3LEL 4 D, H, N, R Histone H2B 1.1 8355
85 3KUY 4 D, H Histone H2B 8355
86 4R8P 4 D, H Histone H2B 1.1 8355
87 3AZM 4 D, H Histone H2B type 1-J 9606
88 3X1U 5 D, H Histone H2B type 1-B 9606
89 3MGS 4 D, H Histone H2B 1.1 8355
90 3WA9 4 D, H Histone H2B type 1-J 9606
91 3C1C 4 D, H Histone 2, H2bf 8364
92 3AZH 4 D, H Histone H2B type 1-J 9606
93 3WAA 4 D, H Histone H2B type 1-J 9606
94 5CPI 4 D, H Histone H2B type 1-J 9606
95 3W99 4 D, H Histone H2B type 1-J 9606
96 3AZE 4 D, H Histone H2B type 1-J 9606
97 3W96 4 D, H Histone H2B type 1-J 9606
98 5CPJ 4 D, H Histone H2B type 1-J 9606
99 2HIO 2 B PROTEIN (HISTONE H2B) 9031
100 4LD9 4 D, H Histone H2B 1.1 8355
101 3O62 4 D, H Histone H2B 1.1 8355
102 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
103 4YM5 4 D, H Histone H2B type 1-J 9606
104 4YM6 4 D, H Histone H2B type 1-J 9606
105 2FJ7 6 D, H Histone H2B 8355
106 3W98 4 D, H Histone H2B type 1-J 9606
107 3AN2 4 D, H Histone H2B type 1-J 9606
108 3B6F 6 D, H Histone H2B 1.1 8355
109 3B6G 6 D, H Histone H2B 1.1 8355
110 3KXB 4 D, H Histone H2B 1.1 8355
111 1ZBB 6 D, H, d, h Histone H2B.1 8355
112 3C9K 2 B, F Histone H2B 7 9031