Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 338
95 % 46 131 105
90 % 46 134 103
70 % 46 135 116
50 % 47 138 140
40 % 47 138 157
30 % 47 138 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 122 85
95 % 50 141 80
90 % 51 146 73
70 % 51 146 87
50 % 51 146 128
40 % 51 146 144
30 % 51 146 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 120 113
90 % 41 129 106
70 % 42 133 106
50 % 45 140 127
40 % 45 140 143
30 % 45 140 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 119 116
90 % 38 122 116
70 % 40 128 125
50 % 40 128 153
40 % 40 128 171
30 % 40 128 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 3UTB 4 D, H Histone H2B 1.1 8355
13 1M19 5 D, H Histone H2B.1 8355
14 5AVB 4 D, H Histone H2B type 1-J 9606
15 5AVC 4 D, H Histone H2B type 1-J 9606
16 5AV5 4 D, H Histone H2B type 1-J 9606
17 3C1B 4 D, H Histone 2, H2bf 8364
18 2NQB 5 D, H Histone H2B 7227
19 5F99 4 D, H Histone H2B 1.1 8355
20 3UT9 4 D, H Histone H2B 1.1 8355
21 4WU8 6 D, H Histone H2B 1.1 8355
22 1P3I 5 D, H Histone H2B 8355
23 3MGR 4 D, H Histone H2B 1.1 8355
24 1F66 5 D, H HISTONE H2B 8355
25 3AZG 4 D, H Histone H2B type 1-J 9606
26 1M18 5 D, H Histone H2B.1 8355
27 5B2J 4 D, H Histone H2B type 1-J 9606
28 2PYO 6 D, H Histone H2B 7227
29 1P3L 5 D, H Histone H2B 8355
30 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
31 5B0Y 4 D, H Histone H2B type 1-J 9606
32 2CV5 5 D, H Histone H2B K 9606
33 5CP6 6 D, H Histone H2B 1.1 8355
34 3MGP 4 D, H Histone H2B 1.1 8355
35 3MVD 4 D, H Histone H2B 1.1 8355
36 4J8U 4 D, H Histone H2B 1.1 8355
37 4WU9 4 D, H Histone H2B 1.1 8355
38 3REH 4 D, H Histone H2B 1.1 8355
39 3AZL 4 D, H Histone H2B type 1-J 9606
40 3AFA 4 D, H Histone H2B type 1-J 9606
41 5E5A 5 D, H Histone H2B 1.1 8355
42 3REJ 4 D, H Histone H2B 1.1 8355
43 3AZF 4 D, H Histone H2B type 1-J 9606
44 1P3P 5 D, H Histone H2B 8355
45 3AV1 4 D, H Histone H2B type 1-J 9606
46 1M1A 5 D, H Histone H2B.1 8355
47 5CPK 4 D, H Histone H2B type 1-J 9606
48 5AY8 4 D, H Histone H2B type 1-J 9606
49 3MNN 4 D, H Histone H2B 1.1 8355
50 1P3G 5 D, H Histone H2B 8355
51 4J8W 4 D, H Histone H2B 1.1 8355
52 1P34 5 D, H Histone H2B 8355
53 3X1V 5 D, H Histone H2B type 1-A 10090
54 3MGQ 4 D, H Histone H2B 1.1 8355
55 3WTP 4 D, H Histone H2B type 1-J 9606
56 3X1T 5 D, H Histone H2B type 1-A 10090
57 2NZD 6 D, H Histone H2B 8355
58 3A6N 4 D, H Histone H2B type 1-J 9606
59 3LJA 4 D, H Histone H2B 1.1 8355
60 3AZI 4 D, H Histone H2B type 1-J 9606
61 3TU4 4 D, H Histone H2B 1.1 8355
62 1P3O 5 D, H Histone H2B 8355
63 1KX4 5 D, H histone H2B.2 8355
64 3AZN 4 D, H Histone H2B type 1-J 9606
65 1P3M 5 D, H Histone H2B 8355
66 4J8V 4 D, H Histone H2B 1.1 8355
67 3X1S 4 D, H Histone H2B type 1-B 9606
68 3LZ0 4 D, H Histone H2B 1.1 8355
69 1P3F 5 D, H Histone H2B 8355
70 1P3K 5 D, H Histone H2B 8355
71 5B2I 4 D, H Histone H2B type 1-J 9606
72 1P3A 5 D, H Histone H2B 8355
73 3LZ1 4 D, H Histone H2B 1.1 8355
74 2F8N 4 D Histone 3, H2ba 10090
75 2F8N 5 H Histone H2B.1 8355
76 4Z5T 4 D, H Histone H2B type 1-J 9606
77 1U35 5 D, H histone 3, H2ba 10090
78 3AV2 4 D, H Histone H2B type 1-J 9606
79 3AYW 4 D, H Histone H2B type 1-J 9606
80 3AZJ 4 D, H Histone H2B type 1-J 9606
81 3REK 4 D, H Histone H2B 1.1 8355
82 4KGC 4 D, H Histone H2B 1.1 8355
83 1ZLA 5 D, H histone H2B 8355
84 3REL 4 D, H Histone H2B 1.1 8355
85 3REI 4 D, H Histone H2B 1.1 8355
86 1P3B 5 D, H Histone H2B 8355
87 3WKJ 4 D, H Histone H2B type 1-A 9606
88 4KUD 4 D, H Histone H2B.1 4932
89 3AZK 4 D, H Histone H2B type 1-J 9606
90 4J8X 4 D, H Histone H2B 1.1 8355
91 3LEL 4 D, H, N, R Histone H2B 1.1 8355
92 3KUY 4 D, H Histone H2B 8355
93 4R8P 4 D, H Histone H2B 1.1 8355
94 3AZM 4 D, H Histone H2B type 1-J 9606
95 3X1U 5 D, H Histone H2B type 1-B 9606
96 3MGS 4 D, H Histone H2B 1.1 8355
97 3WA9 4 D, H Histone H2B type 1-J 9606
98 1ID3 5 D, H HISTONE H2B.2 4932
99 3C1C 4 D, H Histone 2, H2bf 8364
100 3AZH 4 D, H Histone H2B type 1-J 9606
101 5B40 4 D, H Histone H2B type 1-J 9606
102 3WAA 4 D, H Histone H2B type 1-J 9606
103 5CPI 4 D, H Histone H2B type 1-J 9606
104 4JJN 4 D, H Histone H2B.2 4932
105 3W99 4 D, H Histone H2B type 1-J 9606
106 3AZE 4 D, H Histone H2B type 1-J 9606
107 3W96 4 D, H Histone H2B type 1-J 9606
108 5CPJ 4 D, H Histone H2B type 1-J 9606
109 5B24 4 D, H Histone H2B type 1-J 9606
110 2HIO 2 B PROTEIN (HISTONE H2B) 9031
111 4QLC 6 D, H Histone H2B 7227
112 4LD9 4 D, H Histone H2B 1.1 8355
113 3O62 4 D, H Histone H2B 1.1 8355
114 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
115 4YM5 4 D, H Histone H2B type 1-J 9606
116 4YM6 4 D, H Histone H2B type 1-J 9606
117 2FJ7 6 D, H Histone H2B 8355
118 3W98 4 D, H Histone H2B type 1-J 9606
119 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
120 3AN2 4 D, H Histone H2B type 1-J 9606
121 3B6F 6 D, H Histone H2B 1.1 8355
122 3B6G 6 D, H Histone H2B 1.1 8355
123 3KXB 4 D, H Histone H2B 1.1 8355
124 5HQ2 4 H Histone H2B 1.1 8355
125 1ZBB 6 D, H, d, h Histone H2B.1 8355
126 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
127 2RVQ 2 D Histone H2B type 1-J 9606
128 3C9K 2 B, F Histone H2B 7 9031