Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 103
90 % 44 129 103
70 % 44 130 116
50 % 45 133 142
40 % 45 133 156
30 % 45 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 85
95 % 47 135 78
90 % 48 140 78
70 % 48 140 92
50 % 48 140 130
40 % 48 140 144
30 % 48 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 112
90 % 39 123 106
70 % 40 127 106
50 % 43 134 129
40 % 43 134 143
30 % 43 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 116
90 % 36 116 117
70 % 38 122 128
50 % 38 122 155
40 % 38 122 169
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 3UTB 4 D, H Histone H2B 1.1 8355
13 1M19 5 D, H Histone H2B.1 8355
14 5AVB 4 D, H Histone H2B type 1-J 9606
15 5AVC 4 D, H Histone H2B type 1-J 9606
16 5AV5 4 D, H Histone H2B type 1-J 9606
17 3C1B 4 D, H Histone 2, H2bf 8364
18 2NQB 5 D, H Histone H2B 7227
19 5F99 4 D, H Histone H2B 1.1 8355
20 3UT9 4 D, H Histone H2B 1.1 8355
21 4WU8 6 D, H Histone H2B 1.1 8355
22 1P3I 5 D, H Histone H2B 8355
23 3MGR 4 D, H Histone H2B 1.1 8355
24 1F66 5 D, H HISTONE H2B 8355
25 3AZG 4 D, H Histone H2B type 1-J 9606
26 1M18 5 D, H Histone H2B.1 8355
27 2PYO 6 D, H Histone H2B 7227
28 1P3L 5 D, H Histone H2B 8355
29 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
30 5B0Y 4 D, H Histone H2B type 1-J 9606
31 2CV5 5 D, H Histone H2B K 9606
32 3MGP 4 D, H Histone H2B 1.1 8355
33 3MVD 4 D, H Histone H2B 1.1 8355
34 4J8U 4 D, H Histone H2B 1.1 8355
35 4WU9 4 D, H Histone H2B 1.1 8355
36 3REH 4 D, H Histone H2B 1.1 8355
37 3AZL 4 D, H Histone H2B type 1-J 9606
38 3AFA 4 D, H Histone H2B type 1-J 9606
39 5E5A 5 D, H Histone H2B 1.1 8355
40 3REJ 4 D, H Histone H2B 1.1 8355
41 3AZF 4 D, H Histone H2B type 1-J 9606
42 1P3P 5 D, H Histone H2B 8355
43 3AV1 4 D, H Histone H2B type 1-J 9606
44 1M1A 5 D, H Histone H2B.1 8355
45 5CPK 4 D, H Histone H2B type 1-J 9606
46 5AY8 4 D, H Histone H2B type 1-J 9606
47 3MNN 4 D, H Histone H2B 1.1 8355
48 1P3G 5 D, H Histone H2B 8355
49 4J8W 4 D, H Histone H2B 1.1 8355
50 1P34 5 D, H Histone H2B 8355
51 3X1V 5 D, H Histone H2B type 1-A 10090
52 3MGQ 4 D, H Histone H2B 1.1 8355
53 3WTP 4 D, H Histone H2B type 1-J 9606
54 3X1T 5 D, H Histone H2B type 1-A 10090
55 2NZD 6 D, H Histone H2B 8355
56 3A6N 4 D, H Histone H2B type 1-J 9606
57 3LJA 4 D, H Histone H2B 1.1 8355
58 3AZI 4 D, H Histone H2B type 1-J 9606
59 3TU4 4 D, H Histone H2B 1.1 8355
60 1P3O 5 D, H Histone H2B 8355
61 1KX4 5 D, H histone H2B.2 8355
62 3AZN 4 D, H Histone H2B type 1-J 9606
63 1P3M 5 D, H Histone H2B 8355
64 4J8V 4 D, H Histone H2B 1.1 8355
65 3X1S 4 D, H Histone H2B type 1-B 9606
66 3LZ0 4 D, H Histone H2B 1.1 8355
67 1P3F 5 D, H Histone H2B 8355
68 1P3K 5 D, H Histone H2B 8355
69 1P3A 5 D, H Histone H2B 8355
70 3LZ1 4 D, H Histone H2B 1.1 8355
71 2F8N 4 D Histone 3, H2ba 10090
72 2F8N 5 H Histone H2B.1 8355
73 4Z5T 4 D, H Histone H2B type 1-J 9606
74 1U35 5 D, H histone 3, H2ba 10090
75 3AV2 4 D, H Histone H2B type 1-J 9606
76 3AYW 4 D, H Histone H2B type 1-J 9606
77 3AZJ 4 D, H Histone H2B type 1-J 9606
78 3REK 4 D, H Histone H2B 1.1 8355
79 4KGC 4 D, H Histone H2B 1.1 8355
80 1ZLA 5 D, H histone H2B 8355
81 3REL 4 D, H Histone H2B 1.1 8355
82 3REI 4 D, H Histone H2B 1.1 8355
83 1P3B 5 D, H Histone H2B 8355
84 3WKJ 4 D, H Histone H2B type 1-A 9606
85 4KUD 4 D, H Histone H2B.1 4932
86 3AZK 4 D, H Histone H2B type 1-J 9606
87 4J8X 4 D, H Histone H2B 1.1 8355
88 3LEL 4 D, H, N, R Histone H2B 1.1 8355
89 3KUY 4 D, H Histone H2B 8355
90 4R8P 4 D, H Histone H2B 1.1 8355
91 3AZM 4 D, H Histone H2B type 1-J 9606
92 3X1U 5 D, H Histone H2B type 1-B 9606
93 3MGS 4 D, H Histone H2B 1.1 8355
94 3WA9 4 D, H Histone H2B type 1-J 9606
95 1ID3 5 D, H HISTONE H2B.2 4932
96 3C1C 4 D, H Histone 2, H2bf 8364
97 3AZH 4 D, H Histone H2B type 1-J 9606
98 3WAA 4 D, H Histone H2B type 1-J 9606
99 5CPI 4 D, H Histone H2B type 1-J 9606
100 4JJN 4 D, H Histone H2B.2 4932
101 3W99 4 D, H Histone H2B type 1-J 9606
102 3AZE 4 D, H Histone H2B type 1-J 9606
103 3W96 4 D, H Histone H2B type 1-J 9606
104 5CPJ 4 D, H Histone H2B type 1-J 9606
105 5B24 4 D, H Histone H2B type 1-J 9606
106 2HIO 2 B PROTEIN (HISTONE H2B) 9031
107 4QLC 6 D, H Histone H2B 7227
108 4LD9 4 D, H Histone H2B 1.1 8355
109 3O62 4 D, H Histone H2B 1.1 8355
110 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
111 4YM5 4 D, H Histone H2B type 1-J 9606
112 4YM6 4 D, H Histone H2B type 1-J 9606
113 2FJ7 6 D, H Histone H2B 8355
114 3W98 4 D, H Histone H2B type 1-J 9606
115 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
116 3AN2 4 D, H Histone H2B type 1-J 9606
117 3B6F 6 D, H Histone H2B 1.1 8355
118 3B6G 6 D, H Histone H2B 1.1 8355
119 3KXB 4 D, H Histone H2B 1.1 8355
120 5HQ2 4 H Histone H2B 1.1 8355
121 1ZBB 6 D, H, d, h Histone H2B.1 8355
122 3C9K 2 B, F Histone H2B 7 9031