Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 41 301
95 % 52 149 76
90 % 52 152 78
70 % 52 153 96
50 % 53 156 131
40 % 53 156 145
30 % 53 156 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 140 75
95 % 56 159 73
90 % 57 164 74
70 % 57 164 87
50 % 57 164 122
40 % 57 164 139
30 % 57 164 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 53 245
95 % 45 139 86
90 % 47 147 80
70 % 49 153 88
50 % 54 163 117
40 % 54 163 138
30 % 54 163 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 264
95 % 44 134 111
90 % 44 139 108
70 % 47 146 104
50 % 47 146 140
40 % 47 146 155
30 % 47 146 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5X7X 4 D, H Histone H2B type 1-J 9606
13 5B31 4 D, H Histone H2B type 1-J 9606
14 5B1L 4 D, H Histone H2B type 3-A 10090
15 3UTB 4 D, H Histone H2B 1.1 8355
16 1M19 5 D, H Histone H2B.1 8355
17 5AVB 4 D, H Histone H2B type 1-J 9606
18 5AVC 4 D, H Histone H2B type 1-J 9606
19 5AV5 4 D, H Histone H2B type 1-J 9606
20 3C1B 4 D, H Histone 2, H2bf 8364
21 5B1M 4 D, H Histone H2B type 3-A 10090
22 2NQB 5 D, H Histone H2B 7227
23 5F99 4 D, H Histone H2B 1.1 8355
24 5JRG 4 D, H Histone H2B type 1-J 9606
25 3UT9 4 D, H Histone H2B 1.1 8355
26 5B32 4 D, H Histone H2B type 1-J 9606
27 4WU8 6 D, H Histone H2B 1.1 8355
28 1P3I 5 D, H Histone H2B 8355
29 3MGR 4 D, H Histone H2B 1.1 8355
30 1F66 5 D, H HISTONE H2B 8355
31 3AZG 4 D, H Histone H2B type 1-J 9606
32 1M18 5 D, H Histone H2B.1 8355
33 5B2J 4 D, H Histone H2B type 1-J 9606
34 2PYO 6 D, H Histone H2B 7227
35 1P3L 5 D, H Histone H2B 8355
36 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 4 D, H Histone H2B type 1-J 9606
38 2CV5 5 D, H Histone H2B K 9606
39 5CP6 6 D, H Histone H2B 1.1 8355
40 5BT1 3 D Histone H2B.1 4932
41 3MGP 4 D, H Histone H2B 1.1 8355
42 3MVD 4 D, H Histone H2B 1.1 8355
43 4J8U 4 D, H Histone H2B 1.1 8355
44 4WU9 4 D, H Histone H2B 1.1 8355
45 3REH 4 D, H Histone H2B 1.1 8355
46 3AZL 4 D, H Histone H2B type 1-J 9606
47 3AFA 4 D, H Histone H2B type 1-J 9606
48 5E5A 5 D, H Histone H2B 1.1 8355
49 3REJ 4 D, H Histone H2B 1.1 8355
50 3AZF 4 D, H Histone H2B type 1-J 9606
51 1P3P 5 D, H Histone H2B 8355
52 3AV1 4 D, H Histone H2B type 1-J 9606
53 1M1A 5 D, H Histone H2B.1 8355
54 5CPK 4 D, H Histone H2B type 1-J 9606
55 5AY8 4 D, H Histone H2B type 1-J 9606
56 3MNN 4 D, H Histone H2B 1.1 8355
57 1P3G 5 D, H Histone H2B 8355
58 4J8W 4 D, H Histone H2B 1.1 8355
59 1P34 5 D, H Histone H2B 8355
60 3X1V 5 D, H Histone H2B type 1-A 10090
61 5DNM 4 D, H Histone H2B 1.1 8355
62 3MGQ 4 D, H Histone H2B 1.1 8355
63 3WTP 4 D, H Histone H2B type 1-J 9606
64 3X1T 5 D, H Histone H2B type 1-A 10090
65 2NZD 6 D, H Histone H2B 8355
66 3A6N 4 D, H Histone H2B type 1-J 9606
67 5DNN 4 D, H Histone H2B 1.1 8355
68 5GT3 4 D, H Histone H2B type 1-A 9606
69 5GT0 4 D, H Histone H2B type 1-J 9606
70 3LJA 4 D, H Histone H2B 1.1 8355
71 3AZI 4 D, H Histone H2B type 1-J 9606
72 3TU4 4 D, H Histone H2B 1.1 8355
73 1P3O 5 D, H Histone H2B 8355
74 1KX4 5 D, H histone H2B.2 8355
75 3AZN 4 D, H Histone H2B type 1-J 9606
76 1P3M 5 D, H Histone H2B 8355
77 4J8V 4 D, H Histone H2B 1.1 8355
78 5B33 4 D, H Histone H2B type 1-J 9606
79 3X1S 4 D, H Histone H2B type 1-B 9606
80 3LZ0 4 D, H Histone H2B 1.1 8355
81 1P3F 5 D, H Histone H2B 8355
82 1P3K 5 D, H Histone H2B 8355
83 5B2I 4 D, H Histone H2B type 1-J 9606
84 1P3A 5 D, H Histone H2B 8355
85 3LZ1 4 D, H Histone H2B 1.1 8355
86 5GXQ 4 D, H Histone H2B type 1-J 9606
87 2F8N 4 D Histone 3, H2ba 10090
88 2F8N 5 H Histone H2B.1 8355
89 4Z5T 4 D, H Histone H2B type 1-J 9606
90 1U35 5 D, H histone 3, H2ba 10090
91 3AV2 4 D, H Histone H2B type 1-J 9606
92 3AYW 4 D, H Histone H2B type 1-J 9606
93 3AZJ 4 D, H Histone H2B type 1-J 9606
94 3REK 4 D, H Histone H2B 1.1 8355
95 4KGC 4 D, H Histone H2B 1.1 8355
96 1ZLA 5 D, H histone H2B 8355
97 5GSU 4 D, H Histone H2B type 1-A 9606
98 3REL 4 D, H Histone H2B 1.1 8355
99 5GSE 4 D, H, N Histone H2B type 1-J 9606
100 3REI 4 D, H Histone H2B 1.1 8355
101 1P3B 5 D, H Histone H2B 8355
102 3WKJ 4 D, H Histone H2B type 1-A 9606
103 4KUD 4 D, H Histone H2B.1 4932
104 3AZK 4 D, H Histone H2B type 1-J 9606
105 4J8X 4 D, H Histone H2B 1.1 8355
106 3LEL 4 D, H, N, R Histone H2B 1.1 8355
107 3KUY 4 D, H Histone H2B 8355
108 4R8P 4 D, H Histone H2B 1.1 8355
109 3AZM 4 D, H Histone H2B type 1-J 9606
110 3X1U 5 D, H Histone H2B type 1-B 9606
111 3MGS 4 D, H Histone H2B 1.1 8355
112 3WA9 4 D, H Histone H2B type 1-J 9606
113 1ID3 5 D, H HISTONE H2B.2 4932
114 3C1C 4 D, H Histone 2, H2bf 8364
115 3AZH 4 D, H Histone H2B type 1-J 9606
116 5B40 4 D, H Histone H2B type 1-J 9606
117 3WAA 4 D, H Histone H2B type 1-J 9606
118 5CPI 4 D, H Histone H2B type 1-J 9606
119 4JJN 4 D, H Histone H2B.2 4932
120 3W99 4 D, H Histone H2B type 1-J 9606
121 3AZE 4 D, H Histone H2B type 1-J 9606
122 3W96 4 D, H Histone H2B type 1-J 9606
123 5CPJ 4 D, H Histone H2B type 1-J 9606
124 5B24 4 D, H Histone H2B type 1-J 9606
125 2HIO 2 B PROTEIN (HISTONE H2B) 9031
126 4QLC 6 D, H Histone H2B 7227
127 4LD9 4 D, H Histone H2B 1.1 8355
128 3O62 4 D, H Histone H2B 1.1 8355
129 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
130 4YM5 4 D, H Histone H2B type 1-J 9606
131 4YM6 4 D, H Histone H2B type 1-J 9606
132 2FJ7 6 D, H Histone H2B 8355
133 3W98 4 D, H Histone H2B type 1-J 9606
134 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
135 3AN2 4 D, H Histone H2B type 1-J 9606
136 3B6F 6 D, H Histone H2B 1.1 8355
137 3B6G 6 D, H Histone H2B 1.1 8355
138 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
139 3KXB 4 D, H Histone H2B 1.1 8355
140 5HQ2 4 H Histone H2B 1.1 8355
141 1ZBB 6 D, H, d, h Histone H2B.1 8355
142 5X0X 4 D, H Histone H2B 1.1 8355
143 5X0Y 4 D, H Histone H2B 1.1 8355
144 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
145 2RVQ 2 D Histone H2B type 1-J 9606
146 3C9K 2 B, F Histone H2B 7 9031