Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 39 330
95 % 50 142 98
90 % 50 145 83
70 % 50 146 101
50 % 51 149 133
40 % 51 149 151
30 % 51 149 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 133 81
95 % 54 152 71
90 % 55 157 73
70 % 55 157 86
50 % 55 157 124
40 % 55 157 141
30 % 55 157 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 49 253
95 % 42 128 110
90 % 45 139 87
70 % 47 145 94
50 % 52 155 120
40 % 52 155 139
30 % 52 155 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 303
95 % 42 127 114
90 % 42 132 113
70 % 45 139 120
50 % 45 139 145
40 % 45 139 161
30 % 45 139 179
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5B31 4 D, H Histone H2B type 1-J 9606
13 5B1L 4 D, H Histone H2B type 3-A 10090
14 3UTB 4 D, H Histone H2B 1.1 8355
15 1M19 5 D, H Histone H2B.1 8355
16 5AVB 4 D, H Histone H2B type 1-J 9606
17 5AVC 4 D, H Histone H2B type 1-J 9606
18 5AV5 4 D, H Histone H2B type 1-J 9606
19 3C1B 4 D, H Histone 2, H2bf 8364
20 5B1M 4 D, H Histone H2B type 3-A 10090
21 2NQB 5 D, H Histone H2B 7227
22 5F99 4 D, H Histone H2B 1.1 8355
23 3UT9 4 D, H Histone H2B 1.1 8355
24 5B32 4 D, H Histone H2B type 1-J 9606
25 4WU8 6 D, H Histone H2B 1.1 8355
26 1P3I 5 D, H Histone H2B 8355
27 3MGR 4 D, H Histone H2B 1.1 8355
28 1F66 5 D, H HISTONE H2B 8355
29 3AZG 4 D, H Histone H2B type 1-J 9606
30 1M18 5 D, H Histone H2B.1 8355
31 5B2J 4 D, H Histone H2B type 1-J 9606
32 2PYO 6 D, H Histone H2B 7227
33 1P3L 5 D, H Histone H2B 8355
34 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
35 5B0Y 4 D, H Histone H2B type 1-J 9606
36 2CV5 5 D, H Histone H2B K 9606
37 5CP6 6 D, H Histone H2B 1.1 8355
38 5BT1 3 D Histone H2B.1 4932
39 3MGP 4 D, H Histone H2B 1.1 8355
40 3MVD 4 D, H Histone H2B 1.1 8355
41 4J8U 4 D, H Histone H2B 1.1 8355
42 4WU9 4 D, H Histone H2B 1.1 8355
43 3REH 4 D, H Histone H2B 1.1 8355
44 3AZL 4 D, H Histone H2B type 1-J 9606
45 3AFA 4 D, H Histone H2B type 1-J 9606
46 5E5A 5 D, H Histone H2B 1.1 8355
47 3REJ 4 D, H Histone H2B 1.1 8355
48 3AZF 4 D, H Histone H2B type 1-J 9606
49 1P3P 5 D, H Histone H2B 8355
50 3AV1 4 D, H Histone H2B type 1-J 9606
51 1M1A 5 D, H Histone H2B.1 8355
52 5CPK 4 D, H Histone H2B type 1-J 9606
53 5AY8 4 D, H Histone H2B type 1-J 9606
54 3MNN 4 D, H Histone H2B 1.1 8355
55 1P3G 5 D, H Histone H2B 8355
56 4J8W 4 D, H Histone H2B 1.1 8355
57 1P34 5 D, H Histone H2B 8355
58 3X1V 5 D, H Histone H2B type 1-A 10090
59 5DNM 4 D, H Histone H2B 1.1 8355
60 3MGQ 4 D, H Histone H2B 1.1 8355
61 3WTP 4 D, H Histone H2B type 1-J 9606
62 3X1T 5 D, H Histone H2B type 1-A 10090
63 2NZD 6 D, H Histone H2B 8355
64 3A6N 4 D, H Histone H2B type 1-J 9606
65 5DNN 4 D, H Histone H2B 1.1 8355
66 5GT3 4 D, H Histone H2B type 1-A 9606
67 5GT0 4 D, H Histone H2B type 1-J 9606
68 3LJA 4 D, H Histone H2B 1.1 8355
69 3AZI 4 D, H Histone H2B type 1-J 9606
70 3TU4 4 D, H Histone H2B 1.1 8355
71 1P3O 5 D, H Histone H2B 8355
72 1KX4 5 D, H histone H2B.2 8355
73 3AZN 4 D, H Histone H2B type 1-J 9606
74 1P3M 5 D, H Histone H2B 8355
75 4J8V 4 D, H Histone H2B 1.1 8355
76 5B33 4 D, H Histone H2B type 1-J 9606
77 3X1S 4 D, H Histone H2B type 1-B 9606
78 3LZ0 4 D, H Histone H2B 1.1 8355
79 1P3F 5 D, H Histone H2B 8355
80 1P3K 5 D, H Histone H2B 8355
81 5B2I 4 D, H Histone H2B type 1-J 9606
82 1P3A 5 D, H Histone H2B 8355
83 3LZ1 4 D, H Histone H2B 1.1 8355
84 2F8N 4 D Histone 3, H2ba 10090
85 2F8N 5 H Histone H2B.1 8355
86 4Z5T 4 D, H Histone H2B type 1-J 9606
87 1U35 5 D, H histone 3, H2ba 10090
88 3AV2 4 D, H Histone H2B type 1-J 9606
89 3AYW 4 D, H Histone H2B type 1-J 9606
90 3AZJ 4 D, H Histone H2B type 1-J 9606
91 3REK 4 D, H Histone H2B 1.1 8355
92 4KGC 4 D, H Histone H2B 1.1 8355
93 1ZLA 5 D, H histone H2B 8355
94 5GSU 4 D, H Histone H2B type 1-A 9606
95 3REL 4 D, H Histone H2B 1.1 8355
96 3REI 4 D, H Histone H2B 1.1 8355
97 1P3B 5 D, H Histone H2B 8355
98 3WKJ 4 D, H Histone H2B type 1-A 9606
99 4KUD 4 D, H Histone H2B.1 4932
100 3AZK 4 D, H Histone H2B type 1-J 9606
101 4J8X 4 D, H Histone H2B 1.1 8355
102 3LEL 4 D, H, N, R Histone H2B 1.1 8355
103 3KUY 4 D, H Histone H2B 8355
104 4R8P 4 D, H Histone H2B 1.1 8355
105 3AZM 4 D, H Histone H2B type 1-J 9606
106 3X1U 5 D, H Histone H2B type 1-B 9606
107 3MGS 4 D, H Histone H2B 1.1 8355
108 3WA9 4 D, H Histone H2B type 1-J 9606
109 1ID3 5 D, H HISTONE H2B.2 4932
110 3C1C 4 D, H Histone 2, H2bf 8364
111 3AZH 4 D, H Histone H2B type 1-J 9606
112 5B40 4 D, H Histone H2B type 1-J 9606
113 3WAA 4 D, H Histone H2B type 1-J 9606
114 5CPI 4 D, H Histone H2B type 1-J 9606
115 4JJN 4 D, H Histone H2B.2 4932
116 3W99 4 D, H Histone H2B type 1-J 9606
117 3AZE 4 D, H Histone H2B type 1-J 9606
118 3W96 4 D, H Histone H2B type 1-J 9606
119 5CPJ 4 D, H Histone H2B type 1-J 9606
120 5B24 4 D, H Histone H2B type 1-J 9606
121 2HIO 2 B PROTEIN (HISTONE H2B) 9031
122 4QLC 6 D, H Histone H2B 7227
123 4LD9 4 D, H Histone H2B 1.1 8355
124 3O62 4 D, H Histone H2B 1.1 8355
125 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
126 4YM5 4 D, H Histone H2B type 1-J 9606
127 4YM6 4 D, H Histone H2B type 1-J 9606
128 2FJ7 6 D, H Histone H2B 8355
129 3W98 4 D, H Histone H2B type 1-J 9606
130 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
131 3AN2 4 D, H Histone H2B type 1-J 9606
132 3B6F 6 D, H Histone H2B 1.1 8355
133 3B6G 6 D, H Histone H2B 1.1 8355
134 3KXB 4 D, H Histone H2B 1.1 8355
135 5HQ2 4 H Histone H2B 1.1 8355
136 1ZBB 6 D, H, d, h Histone H2B.1 8355
137 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
138 2RVQ 2 D Histone H2B type 1-J 9606
139 3C9K 2 B, F Histone H2B 7 9031