Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 323
95 % 48 137 100
90 % 48 140 88
70 % 48 141 100
50 % 49 144 132
40 % 49 144 151
30 % 49 144 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 128 83
95 % 52 147 72
90 % 53 152 74
70 % 53 152 88
50 % 53 152 126
40 % 53 152 143
30 % 53 152 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 248
95 % 40 125 110
90 % 43 134 96
70 % 44 138 94
50 % 49 148 124
40 % 49 148 142
30 % 49 148 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 267
95 % 40 124 112
90 % 40 127 115
70 % 42 133 120
50 % 42 133 148
40 % 42 133 165
30 % 42 133 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5B31 4 D, H Histone H2B type 1-J 9606
13 3UTB 4 D, H Histone H2B 1.1 8355
14 1M19 5 D, H Histone H2B.1 8355
15 5AVB 4 D, H Histone H2B type 1-J 9606
16 5AVC 4 D, H Histone H2B type 1-J 9606
17 5AV5 4 D, H Histone H2B type 1-J 9606
18 3C1B 4 D, H Histone 2, H2bf 8364
19 2NQB 5 D, H Histone H2B 7227
20 5F99 4 D, H Histone H2B 1.1 8355
21 3UT9 4 D, H Histone H2B 1.1 8355
22 5B32 4 D, H Histone H2B type 1-J 9606
23 4WU8 6 D, H Histone H2B 1.1 8355
24 1P3I 5 D, H Histone H2B 8355
25 3MGR 4 D, H Histone H2B 1.1 8355
26 1F66 5 D, H HISTONE H2B 8355
27 3AZG 4 D, H Histone H2B type 1-J 9606
28 1M18 5 D, H Histone H2B.1 8355
29 5B2J 4 D, H Histone H2B type 1-J 9606
30 2PYO 6 D, H Histone H2B 7227
31 1P3L 5 D, H Histone H2B 8355
32 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
33 5B0Y 4 D, H Histone H2B type 1-J 9606
34 2CV5 5 D, H Histone H2B K 9606
35 5CP6 6 D, H Histone H2B 1.1 8355
36 3MGP 4 D, H Histone H2B 1.1 8355
37 3MVD 4 D, H Histone H2B 1.1 8355
38 4J8U 4 D, H Histone H2B 1.1 8355
39 4WU9 4 D, H Histone H2B 1.1 8355
40 3REH 4 D, H Histone H2B 1.1 8355
41 3AZL 4 D, H Histone H2B type 1-J 9606
42 3AFA 4 D, H Histone H2B type 1-J 9606
43 5E5A 5 D, H Histone H2B 1.1 8355
44 3REJ 4 D, H Histone H2B 1.1 8355
45 3AZF 4 D, H Histone H2B type 1-J 9606
46 1P3P 5 D, H Histone H2B 8355
47 3AV1 4 D, H Histone H2B type 1-J 9606
48 1M1A 5 D, H Histone H2B.1 8355
49 5CPK 4 D, H Histone H2B type 1-J 9606
50 5AY8 4 D, H Histone H2B type 1-J 9606
51 3MNN 4 D, H Histone H2B 1.1 8355
52 1P3G 5 D, H Histone H2B 8355
53 4J8W 4 D, H Histone H2B 1.1 8355
54 1P34 5 D, H Histone H2B 8355
55 3X1V 5 D, H Histone H2B type 1-A 10090
56 5DNM 4 D, H Histone H2B 1.1 8355
57 3MGQ 4 D, H Histone H2B 1.1 8355
58 3WTP 4 D, H Histone H2B type 1-J 9606
59 3X1T 5 D, H Histone H2B type 1-A 10090
60 2NZD 6 D, H Histone H2B 8355
61 3A6N 4 D, H Histone H2B type 1-J 9606
62 5DNN 4 D, H Histone H2B 1.1 8355
63 3LJA 4 D, H Histone H2B 1.1 8355
64 3AZI 4 D, H Histone H2B type 1-J 9606
65 3TU4 4 D, H Histone H2B 1.1 8355
66 1P3O 5 D, H Histone H2B 8355
67 1KX4 5 D, H histone H2B.2 8355
68 3AZN 4 D, H Histone H2B type 1-J 9606
69 1P3M 5 D, H Histone H2B 8355
70 4J8V 4 D, H Histone H2B 1.1 8355
71 5B33 4 D, H Histone H2B type 1-J 9606
72 3X1S 4 D, H Histone H2B type 1-B 9606
73 3LZ0 4 D, H Histone H2B 1.1 8355
74 1P3F 5 D, H Histone H2B 8355
75 1P3K 5 D, H Histone H2B 8355
76 5B2I 4 D, H Histone H2B type 1-J 9606
77 1P3A 5 D, H Histone H2B 8355
78 3LZ1 4 D, H Histone H2B 1.1 8355
79 2F8N 4 D Histone 3, H2ba 10090
80 2F8N 5 H Histone H2B.1 8355
81 4Z5T 4 D, H Histone H2B type 1-J 9606
82 1U35 5 D, H histone 3, H2ba 10090
83 3AV2 4 D, H Histone H2B type 1-J 9606
84 3AYW 4 D, H Histone H2B type 1-J 9606
85 3AZJ 4 D, H Histone H2B type 1-J 9606
86 3REK 4 D, H Histone H2B 1.1 8355
87 4KGC 4 D, H Histone H2B 1.1 8355
88 1ZLA 5 D, H histone H2B 8355
89 3REL 4 D, H Histone H2B 1.1 8355
90 3REI 4 D, H Histone H2B 1.1 8355
91 1P3B 5 D, H Histone H2B 8355
92 3WKJ 4 D, H Histone H2B type 1-A 9606
93 4KUD 4 D, H Histone H2B.1 4932
94 3AZK 4 D, H Histone H2B type 1-J 9606
95 4J8X 4 D, H Histone H2B 1.1 8355
96 3LEL 4 D, H, N, R Histone H2B 1.1 8355
97 3KUY 4 D, H Histone H2B 8355
98 4R8P 4 D, H Histone H2B 1.1 8355
99 3AZM 4 D, H Histone H2B type 1-J 9606
100 3X1U 5 D, H Histone H2B type 1-B 9606
101 3MGS 4 D, H Histone H2B 1.1 8355
102 3WA9 4 D, H Histone H2B type 1-J 9606
103 1ID3 5 D, H HISTONE H2B.2 4932
104 3C1C 4 D, H Histone 2, H2bf 8364
105 3AZH 4 D, H Histone H2B type 1-J 9606
106 5B40 4 D, H Histone H2B type 1-J 9606
107 3WAA 4 D, H Histone H2B type 1-J 9606
108 5CPI 4 D, H Histone H2B type 1-J 9606
109 4JJN 4 D, H Histone H2B.2 4932
110 3W99 4 D, H Histone H2B type 1-J 9606
111 3AZE 4 D, H Histone H2B type 1-J 9606
112 3W96 4 D, H Histone H2B type 1-J 9606
113 5CPJ 4 D, H Histone H2B type 1-J 9606
114 5B24 4 D, H Histone H2B type 1-J 9606
115 2HIO 2 B PROTEIN (HISTONE H2B) 9031
116 4QLC 6 D, H Histone H2B 7227
117 4LD9 4 D, H Histone H2B 1.1 8355
118 3O62 4 D, H Histone H2B 1.1 8355
119 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
120 4YM5 4 D, H Histone H2B type 1-J 9606
121 4YM6 4 D, H Histone H2B type 1-J 9606
122 2FJ7 6 D, H Histone H2B 8355
123 3W98 4 D, H Histone H2B type 1-J 9606
124 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
125 3AN2 4 D, H Histone H2B type 1-J 9606
126 3B6F 6 D, H Histone H2B 1.1 8355
127 3B6G 6 D, H Histone H2B 1.1 8355
128 3KXB 4 D, H Histone H2B 1.1 8355
129 5HQ2 4 H Histone H2B 1.1 8355
130 1ZBB 6 D, H, d, h Histone H2B.1 8355
131 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
132 2RVQ 2 D Histone H2B type 1-J 9606
133 3C9K 2 B, F Histone H2B 7 9031