Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 327
95 % 52 147 80
90 % 52 150 79
70 % 52 151 98
50 % 53 154 134
40 % 53 154 149
30 % 53 154 165
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 138 77
95 % 56 157 73
90 % 57 162 73
70 % 57 162 87
50 % 57 162 123
40 % 57 162 140
30 % 57 162 156
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 52 251
95 % 44 133 110
90 % 47 144 83
70 % 49 150 93
50 % 54 160 120
40 % 54 160 138
30 % 54 160 153
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 46 271
95 % 44 132 113
90 % 44 137 111
70 % 47 144 106
50 % 47 144 143
40 % 47 144 159
30 % 47 144 178
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5X7X 4 D, H Histone H2B type 1-J 9606
13 5B31 4 D, H Histone H2B type 1-J 9606
14 5B1L 4 D, H Histone H2B type 3-A 10090
15 3UTB 4 D, H Histone H2B 1.1 8355
16 1M19 5 D, H Histone H2B.1 8355
17 5AVB 4 D, H Histone H2B type 1-J 9606
18 5AVC 4 D, H Histone H2B type 1-J 9606
19 5AV5 4 D, H Histone H2B type 1-J 9606
20 3C1B 4 D, H Histone 2, H2bf 8364
21 5B1M 4 D, H Histone H2B type 3-A 10090
22 2NQB 5 D, H Histone H2B 7227
23 5F99 4 D, H Histone H2B 1.1 8355
24 5JRG 4 D, H Histone H2B type 1-J 9606
25 3UT9 4 D, H Histone H2B 1.1 8355
26 5B32 4 D, H Histone H2B type 1-J 9606
27 4WU8 6 D, H Histone H2B 1.1 8355
28 1P3I 5 D, H Histone H2B 8355
29 3MGR 4 D, H Histone H2B 1.1 8355
30 1F66 5 D, H HISTONE H2B 8355
31 3AZG 4 D, H Histone H2B type 1-J 9606
32 1M18 5 D, H Histone H2B.1 8355
33 5B2J 4 D, H Histone H2B type 1-J 9606
34 2PYO 6 D, H Histone H2B 7227
35 1P3L 5 D, H Histone H2B 8355
36 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 4 D, H Histone H2B type 1-J 9606
38 2CV5 5 D, H Histone H2B K 9606
39 5CP6 6 D, H Histone H2B 1.1 8355
40 5BT1 3 D Histone H2B.1 4932
41 3MGP 4 D, H Histone H2B 1.1 8355
42 3MVD 4 D, H Histone H2B 1.1 8355
43 4J8U 4 D, H Histone H2B 1.1 8355
44 4WU9 4 D, H Histone H2B 1.1 8355
45 3REH 4 D, H Histone H2B 1.1 8355
46 3AZL 4 D, H Histone H2B type 1-J 9606
47 3AFA 4 D, H Histone H2B type 1-J 9606
48 5E5A 5 D, H Histone H2B 1.1 8355
49 3REJ 4 D, H Histone H2B 1.1 8355
50 3AZF 4 D, H Histone H2B type 1-J 9606
51 1P3P 5 D, H Histone H2B 8355
52 3AV1 4 D, H Histone H2B type 1-J 9606
53 1M1A 5 D, H Histone H2B.1 8355
54 5CPK 4 D, H Histone H2B type 1-J 9606
55 5AY8 4 D, H Histone H2B type 1-J 9606
56 3MNN 4 D, H Histone H2B 1.1 8355
57 1P3G 5 D, H Histone H2B 8355
58 4J8W 4 D, H Histone H2B 1.1 8355
59 1P34 5 D, H Histone H2B 8355
60 3X1V 5 D, H Histone H2B type 1-A 10090
61 5DNM 4 D, H Histone H2B 1.1 8355
62 3MGQ 4 D, H Histone H2B 1.1 8355
63 3WTP 4 D, H Histone H2B type 1-J 9606
64 3X1T 5 D, H Histone H2B type 1-A 10090
65 2NZD 6 D, H Histone H2B 8355
66 3A6N 4 D, H Histone H2B type 1-J 9606
67 5DNN 4 D, H Histone H2B 1.1 8355
68 5GT3 4 D, H Histone H2B type 1-A 9606
69 5GT0 4 D, H Histone H2B type 1-J 9606
70 3LJA 4 D, H Histone H2B 1.1 8355
71 3AZI 4 D, H Histone H2B type 1-J 9606
72 3TU4 4 D, H Histone H2B 1.1 8355
73 1P3O 5 D, H Histone H2B 8355
74 1KX4 5 D, H histone H2B.2 8355
75 3AZN 4 D, H Histone H2B type 1-J 9606
76 1P3M 5 D, H Histone H2B 8355
77 4J8V 4 D, H Histone H2B 1.1 8355
78 5B33 4 D, H Histone H2B type 1-J 9606
79 3X1S 4 D, H Histone H2B type 1-B 9606
80 3LZ0 4 D, H Histone H2B 1.1 8355
81 1P3F 5 D, H Histone H2B 8355
82 1P3K 5 D, H Histone H2B 8355
83 5B2I 4 D, H Histone H2B type 1-J 9606
84 1P3A 5 D, H Histone H2B 8355
85 3LZ1 4 D, H Histone H2B 1.1 8355
86 5GXQ 4 D, H Histone H2B type 1-J 9606
87 2F8N 4 D Histone 3, H2ba 10090
88 2F8N 5 H Histone H2B.1 8355
89 4Z5T 4 D, H Histone H2B type 1-J 9606
90 1U35 5 D, H histone 3, H2ba 10090
91 3AV2 4 D, H Histone H2B type 1-J 9606
92 3AYW 4 D, H Histone H2B type 1-J 9606
93 3AZJ 4 D, H Histone H2B type 1-J 9606
94 3REK 4 D, H Histone H2B 1.1 8355
95 4KGC 4 D, H Histone H2B 1.1 8355
96 1ZLA 5 D, H histone H2B 8355
97 5GSU 4 D, H Histone H2B type 1-A 9606
98 3REL 4 D, H Histone H2B 1.1 8355
99 3REI 4 D, H Histone H2B 1.1 8355
100 1P3B 5 D, H Histone H2B 8355
101 3WKJ 4 D, H Histone H2B type 1-A 9606
102 4KUD 4 D, H Histone H2B.1 4932
103 3AZK 4 D, H Histone H2B type 1-J 9606
104 4J8X 4 D, H Histone H2B 1.1 8355
105 3LEL 4 D, H, N, R Histone H2B 1.1 8355
106 3KUY 4 D, H Histone H2B 8355
107 4R8P 4 D, H Histone H2B 1.1 8355
108 3AZM 4 D, H Histone H2B type 1-J 9606
109 3X1U 5 D, H Histone H2B type 1-B 9606
110 3MGS 4 D, H Histone H2B 1.1 8355
111 3WA9 4 D, H Histone H2B type 1-J 9606
112 1ID3 5 D, H HISTONE H2B.2 4932
113 3C1C 4 D, H Histone 2, H2bf 8364
114 3AZH 4 D, H Histone H2B type 1-J 9606
115 5B40 4 D, H Histone H2B type 1-J 9606
116 3WAA 4 D, H Histone H2B type 1-J 9606
117 5CPI 4 D, H Histone H2B type 1-J 9606
118 4JJN 4 D, H Histone H2B.2 4932
119 3W99 4 D, H Histone H2B type 1-J 9606
120 3AZE 4 D, H Histone H2B type 1-J 9606
121 3W96 4 D, H Histone H2B type 1-J 9606
122 5CPJ 4 D, H Histone H2B type 1-J 9606
123 5B24 4 D, H Histone H2B type 1-J 9606
124 2HIO 2 B PROTEIN (HISTONE H2B) 9031
125 4QLC 6 D, H Histone H2B 7227
126 4LD9 4 D, H Histone H2B 1.1 8355
127 3O62 4 D, H Histone H2B 1.1 8355
128 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
129 4YM5 4 D, H Histone H2B type 1-J 9606
130 4YM6 4 D, H Histone H2B type 1-J 9606
131 2FJ7 6 D, H Histone H2B 8355
132 3W98 4 D, H Histone H2B type 1-J 9606
133 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
134 3AN2 4 D, H Histone H2B type 1-J 9606
135 3B6F 6 D, H Histone H2B 1.1 8355
136 3B6G 6 D, H Histone H2B 1.1 8355
137 3KXB 4 D, H Histone H2B 1.1 8355
138 5HQ2 4 H Histone H2B 1.1 8355
139 1ZBB 6 D, H, d, h Histone H2B.1 8355
140 5X0X 4 D, H Histone H2B 1.1 8355
141 5X0Y 4 D, H Histone H2B 1.1 8355
142 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
143 2RVQ 2 D Histone H2B type 1-J 9606
144 3C9K 2 B, F Histone H2B 7 9031