Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 42 311
95 % 52 151 76
90 % 52 154 78
70 % 52 155 93
50 % 53 158 128
40 % 53 158 145
30 % 53 158 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 142 62
95 % 56 161 74
90 % 57 166 73
70 % 57 166 86
50 % 57 166 122
40 % 57 166 140
30 % 57 166 154
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 54 252
95 % 45 141 81
90 % 47 149 79
70 % 49 155 89
50 % 54 165 116
40 % 54 165 138
30 % 54 165 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 48 270
95 % 44 136 108
90 % 44 141 91
70 % 47 148 100
50 % 47 148 139
40 % 47 148 156
30 % 47 148 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 1S32 5 D, H Histone H2B 8355
6 5AV8 4 D, H Histone H2B type 1-J 9606
7 1KX3 5 D, H histone H2B.2 8355
8 5AV9 4 D, H Histone H2B type 1-J 9606
9 5AV6 4 D, H Histone H2B type 1-J 9606
10 1HQ3 2 B, F HISTONE H2B 9031
11 3UTA 4 D, H Histone H2B 1.1 8355
12 5X7X 4 D, H Histone H2B type 1-J 9606
13 5B31 4 D, H Histone H2B type 1-J 9606
14 5B1L 4 D, H Histone H2B type 3-A 10090
15 3UTB 4 D, H Histone H2B 1.1 8355
16 1M19 5 D, H Histone H2B.1 8355
17 5AVB 4 D, H Histone H2B type 1-J 9606
18 5AVC 4 D, H Histone H2B type 1-J 9606
19 5AV5 4 D, H Histone H2B type 1-J 9606
20 3C1B 4 D, H Histone 2, H2bf 8364
21 5B1M 4 D, H Histone H2B type 3-A 10090
22 2NQB 5 D, H Histone H2B 7227
23 5F99 4 D, H Histone H2B 1.1 8355
24 5JRG 4 D, H Histone H2B type 1-J 9606
25 3UT9 4 D, H Histone H2B 1.1 8355
26 5B32 4 D, H Histone H2B type 1-J 9606
27 4WU8 6 D, H Histone H2B 1.1 8355
28 1P3I 5 D, H Histone H2B 8355
29 3MGR 4 D, H Histone H2B 1.1 8355
30 1F66 5 D, H HISTONE H2B 8355
31 3AZG 4 D, H Histone H2B type 1-J 9606
32 1M18 5 D, H Histone H2B.1 8355
33 5B2J 4 D, H Histone H2B type 1-J 9606
34 2PYO 6 D, H Histone H2B 7227
35 1P3L 5 D, H Histone H2B 8355
36 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 4 D, H Histone H2B type 1-J 9606
38 2CV5 5 D, H Histone H2B K 9606
39 5CP6 6 D, H Histone H2B 1.1 8355
40 5BT1 3 D Histone H2B.1 4932
41 3MGP 4 D, H Histone H2B 1.1 8355
42 3MVD 4 D, H Histone H2B 1.1 8355
43 4J8U 4 D, H Histone H2B 1.1 8355
44 4WU9 4 D, H Histone H2B 1.1 8355
45 3REH 4 D, H Histone H2B 1.1 8355
46 3AZL 4 D, H Histone H2B type 1-J 9606
47 3AFA 4 D, H Histone H2B type 1-J 9606
48 5E5A 5 D, H Histone H2B 1.1 8355
49 3REJ 4 D, H Histone H2B 1.1 8355
50 3AZF 4 D, H Histone H2B type 1-J 9606
51 5GTC 4 D, H Histone H2B type 1-J 9606
52 1P3P 5 D, H Histone H2B 8355
53 3AV1 4 D, H Histone H2B type 1-J 9606
54 1M1A 5 D, H Histone H2B.1 8355
55 5CPK 4 D, H Histone H2B type 1-J 9606
56 5AY8 4 D, H Histone H2B type 1-J 9606
57 3MNN 4 D, H Histone H2B 1.1 8355
58 1P3G 5 D, H Histone H2B 8355
59 4J8W 4 D, H Histone H2B 1.1 8355
60 1P34 5 D, H Histone H2B 8355
61 3X1V 5 D, H Histone H2B type 1-A 10090
62 5DNM 4 D, H Histone H2B 1.1 8355
63 3MGQ 4 D, H Histone H2B 1.1 8355
64 3WTP 4 D, H Histone H2B type 1-J 9606
65 3X1T 5 D, H Histone H2B type 1-A 10090
66 2NZD 6 D, H Histone H2B 8355
67 3A6N 4 D, H Histone H2B type 1-J 9606
68 5DNN 4 D, H Histone H2B 1.1 8355
69 5GT3 4 D, H Histone H2B type 1-A 9606
70 5GT0 4 D, H Histone H2B type 1-J 9606
71 3LJA 4 D, H Histone H2B 1.1 8355
72 3AZI 4 D, H Histone H2B type 1-J 9606
73 3TU4 4 D, H Histone H2B 1.1 8355
74 1P3O 5 D, H Histone H2B 8355
75 1KX4 5 D, H histone H2B.2 8355
76 3AZN 4 D, H Histone H2B type 1-J 9606
77 1P3M 5 D, H Histone H2B 8355
78 4J8V 4 D, H Histone H2B 1.1 8355
79 5B33 4 D, H Histone H2B type 1-J 9606
80 3X1S 4 D, H Histone H2B type 1-B 9606
81 3LZ0 4 D, H Histone H2B 1.1 8355
82 1P3F 5 D, H Histone H2B 8355
83 1P3K 5 D, H Histone H2B 8355
84 5B2I 4 D, H Histone H2B type 1-J 9606
85 1P3A 5 D, H Histone H2B 8355
86 3LZ1 4 D, H Histone H2B 1.1 8355
87 5GXQ 4 D, H Histone H2B type 1-J 9606
88 2F8N 4 D Histone 3, H2ba 10090
89 2F8N 5 H Histone H2B.1 8355
90 4Z5T 4 D, H Histone H2B type 1-J 9606
91 1U35 5 D, H histone 3, H2ba 10090
92 3AV2 4 D, H Histone H2B type 1-J 9606
93 3AYW 4 D, H Histone H2B type 1-J 9606
94 3AZJ 4 D, H Histone H2B type 1-J 9606
95 3REK 4 D, H Histone H2B 1.1 8355
96 4KGC 4 D, H Histone H2B 1.1 8355
97 1ZLA 5 D, H histone H2B 8355
98 5GSU 4 D, H Histone H2B type 1-A 9606
99 3REL 4 D, H Histone H2B 1.1 8355
100 5GSE 4 D, H, N Histone H2B type 1-J 9606
101 3REI 4 D, H Histone H2B 1.1 8355
102 1P3B 5 D, H Histone H2B 8355
103 3WKJ 4 D, H Histone H2B type 1-A 9606
104 4KUD 4 D, H Histone H2B.1 4932
105 3AZK 4 D, H Histone H2B type 1-J 9606
106 4J8X 4 D, H Histone H2B 1.1 8355
107 3LEL 4 D, H, N, R Histone H2B 1.1 8355
108 3KUY 4 D, H Histone H2B 8355
109 4R8P 4 D, H Histone H2B 1.1 8355
110 3AZM 4 D, H Histone H2B type 1-J 9606
111 3X1U 5 D, H Histone H2B type 1-B 9606
112 3MGS 4 D, H Histone H2B 1.1 8355
113 3WA9 4 D, H Histone H2B type 1-J 9606
114 1ID3 5 D, H HISTONE H2B.2 4932
115 3C1C 4 D, H Histone 2, H2bf 8364
116 3AZH 4 D, H Histone H2B type 1-J 9606
117 5B40 4 D, H Histone H2B type 1-J 9606
118 3WAA 4 D, H Histone H2B type 1-J 9606
119 5CPI 4 D, H Histone H2B type 1-J 9606
120 4JJN 4 D, H Histone H2B.2 4932
121 3W99 4 D, H Histone H2B type 1-J 9606
122 3AZE 4 D, H Histone H2B type 1-J 9606
123 3W96 4 D, H Histone H2B type 1-J 9606
124 5CPJ 4 D, H Histone H2B type 1-J 9606
125 5B24 4 D, H Histone H2B type 1-J 9606
126 2HIO 2 B PROTEIN (HISTONE H2B) 9031
127 4QLC 6 D, H Histone H2B 7227
128 4LD9 4 D, H Histone H2B 1.1 8355
129 3O62 4 D, H Histone H2B 1.1 8355
130 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
131 4YM5 4 D, H Histone H2B type 1-J 9606
132 4YM6 4 D, H Histone H2B type 1-J 9606
133 2FJ7 6 D, H Histone H2B 8355
134 3W98 4 D, H Histone H2B type 1-J 9606
135 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
136 3AN2 4 D, H Histone H2B type 1-J 9606
137 3B6F 6 D, H Histone H2B 1.1 8355
138 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
139 3B6G 6 D, H Histone H2B 1.1 8355
140 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
141 3KXB 4 D, H Histone H2B 1.1 8355
142 5HQ2 4 H Histone H2B 1.1 8355
143 1ZBB 6 D, H, d, h Histone H2B.1 8355
144 5X0X 4 D, H Histone H2B 1.1 8355
145 5X0Y 4 D, H Histone H2B 1.1 8355
146 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
147 2RVQ 2 D Histone H2B type 1-J 9606
148 3C9K 2 B, F Histone H2B 7 9031