Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 353
95 % 44 126 106
90 % 44 129 107
70 % 44 130 122
50 % 45 133 145
40 % 45 133 161
30 % 45 133 179
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 89
95 % 47 135 99
90 % 48 140 84
70 % 48 140 98
50 % 48 140 134
40 % 48 140 146
30 % 48 140 167
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 42 274
95 % 36 115 115
90 % 39 124 109
70 % 40 128 117
50 % 43 135 133
40 % 43 135 145
30 % 43 135 165
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 301
95 % 36 114 118
90 % 36 117 119
70 % 38 123 129
50 % 38 123 155
40 % 38 123 171
30 % 38 123 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5AVB 4 D, H Histone H2B type 1-J 9606
6 5AVC 4 D, H Histone H2B type 1-J 9606
7 5AV5 4 D, H Histone H2B type 1-J 9606
8 3AZG 4 D, H Histone H2B type 1-J 9606
9 5B0Y 4 D, H Histone H2B type 1-J 9606
10 3AZL 4 D, H Histone H2B type 1-J 9606
11 3AFA 4 D, H Histone H2B type 1-J 9606
12 3AZF 4 D, H Histone H2B type 1-J 9606
13 3AV1 4 D, H Histone H2B type 1-J 9606
14 5CPK 4 D, H Histone H2B type 1-J 9606
15 5AY8 4 D, H Histone H2B type 1-J 9606
16 3WTP 4 D, H Histone H2B type 1-J 9606
17 3A6N 4 D, H Histone H2B type 1-J 9606
18 3AZI 4 D, H Histone H2B type 1-J 9606
19 3AZN 4 D, H Histone H2B type 1-J 9606
20 4Z5T 4 D, H Histone H2B type 1-J 9606
21 3AV2 4 D, H Histone H2B type 1-J 9606
22 3AYW 4 D, H Histone H2B type 1-J 9606
23 3AZJ 4 D, H Histone H2B type 1-J 9606
24 3AZK 4 D, H Histone H2B type 1-J 9606
25 3AZM 4 D, H Histone H2B type 1-J 9606
26 3WA9 4 D, H Histone H2B type 1-J 9606
27 3AZH 4 D, H Histone H2B type 1-J 9606
28 3WAA 4 D, H Histone H2B type 1-J 9606
29 5CPI 4 D, H Histone H2B type 1-J 9606
30 3W99 4 D, H Histone H2B type 1-J 9606
31 3AZE 4 D, H Histone H2B type 1-J 9606
32 3W96 4 D, H Histone H2B type 1-J 9606
33 5CPJ 4 D, H Histone H2B type 1-J 9606
34 5B24 4 D, H Histone H2B type 1-J 9606
35 4YM5 4 D, H Histone H2B type 1-J 9606
36 4YM6 4 D, H Histone H2B type 1-J 9606
37 3W98 4 D, H Histone H2B type 1-J 9606
38 3AN2 4 D, H Histone H2B type 1-J 9606