Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 322
95 % 48 134 101
90 % 48 137 102
70 % 48 138 104
50 % 49 141 136
40 % 49 141 152
30 % 49 141 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 125 83
95 % 52 144 75
90 % 53 149 74
70 % 53 149 88
50 % 53 149 126
40 % 53 149 145
30 % 53 149 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 247
95 % 40 123 111
90 % 43 132 104
70 % 44 136 97
50 % 49 146 124
40 % 49 146 142
30 % 49 146 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 266
95 % 40 122 113
90 % 40 125 116
70 % 42 131 123
50 % 42 131 151
40 % 42 131 170
30 % 42 131 184
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5B31 4 D, H Histone H2B type 1-J 9606
6 5AVB 4 D, H Histone H2B type 1-J 9606
7 5AVC 4 D, H Histone H2B type 1-J 9606
8 5AV5 4 D, H Histone H2B type 1-J 9606
9 5B32 4 D, H Histone H2B type 1-J 9606
10 3AZG 4 D, H Histone H2B type 1-J 9606
11 5B2J 4 D, H Histone H2B type 1-J 9606
12 5B0Y 4 D, H Histone H2B type 1-J 9606
13 3AZL 4 D, H Histone H2B type 1-J 9606
14 3AFA 4 D, H Histone H2B type 1-J 9606
15 3AZF 4 D, H Histone H2B type 1-J 9606
16 3AV1 4 D, H Histone H2B type 1-J 9606
17 5CPK 4 D, H Histone H2B type 1-J 9606
18 5AY8 4 D, H Histone H2B type 1-J 9606
19 3WTP 4 D, H Histone H2B type 1-J 9606
20 3A6N 4 D, H Histone H2B type 1-J 9606
21 3AZI 4 D, H Histone H2B type 1-J 9606
22 3AZN 4 D, H Histone H2B type 1-J 9606
23 5B33 4 D, H Histone H2B type 1-J 9606
24 5B2I 4 D, H Histone H2B type 1-J 9606
25 4Z5T 4 D, H Histone H2B type 1-J 9606
26 3AV2 4 D, H Histone H2B type 1-J 9606
27 3AYW 4 D, H Histone H2B type 1-J 9606
28 3AZJ 4 D, H Histone H2B type 1-J 9606
29 3AZK 4 D, H Histone H2B type 1-J 9606
30 3AZM 4 D, H Histone H2B type 1-J 9606
31 3WA9 4 D, H Histone H2B type 1-J 9606
32 3AZH 4 D, H Histone H2B type 1-J 9606
33 3WAA 4 D, H Histone H2B type 1-J 9606
34 5CPI 4 D, H Histone H2B type 1-J 9606
35 3W99 4 D, H Histone H2B type 1-J 9606
36 3AZE 4 D, H Histone H2B type 1-J 9606
37 3W96 4 D, H Histone H2B type 1-J 9606
38 5CPJ 4 D, H Histone H2B type 1-J 9606
39 5B24 4 D, H Histone H2B type 1-J 9606
40 4YM5 4 D, H Histone H2B type 1-J 9606
41 4YM6 4 D, H Histone H2B type 1-J 9606
42 3W98 4 D, H Histone H2B type 1-J 9606
43 3AN2 4 D, H Histone H2B type 1-J 9606