Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 45 337
95 % 54 166 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 54 169 80
70 % 54 170 94
50 % 55 174 124
40 % 55 174 144
30 % 55 174 151
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 159 57
95 % 58 178 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 59 183 70
70 % 59 183 86
50 % 59 183 115
40 % 59 183 139
30 % 59 183 144
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 60 241
95 % 47 161 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 49 169 75
70 % 51 175 89
50 % 56 185 108
40 % 56 185 130
30 % 56 185 139
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 53 285
95 % 46 155 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 46 160 86
70 % 49 167 99
50 % 49 167 136
40 % 49 167 149
30 % 49 167 159
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5X7X 4 D, H Histone H2B type 1-J 9606
6 5B31 4 D, H Histone H2B type 1-J 9606
7 5AVB 4 D, H Histone H2B type 1-J 9606
8 5AVC 4 D, H Histone H2B type 1-J 9606
9 5AV5 4 D, H Histone H2B type 1-J 9606
10 5JRG 4 D, H Histone H2B type 1-J 9606
11 5B32 4 D, H Histone H2B type 1-J 9606
12 3AZG 4 D, H Histone H2B type 1-J 9606
13 5B2J 4 D, H Histone H2B type 1-J 9606
14 5B0Y 4 D, H Histone H2B type 1-J 9606
15 3AZL 4 D, H Histone H2B type 1-J 9606
16 3AFA 4 D, H Histone H2B type 1-J 9606
17 3AZF 4 D, H Histone H2B type 1-J 9606
18 5GTC 4 D, H Histone H2B type 1-J 9606
19 3AV1 4 D, H Histone H2B type 1-J 9606
20 5CPK 4 D, H Histone H2B type 1-J 9606
21 5AY8 4 D, H Histone H2B type 1-J 9606
22 5XF3 4 D, H Histone H2B type 1-J 9606
23 3WTP 4 D, H Histone H2B type 1-J 9606
24 3A6N 4 D, H Histone H2B type 1-J 9606
25 3AZI 4 D, H Histone H2B type 1-J 9606
26 3AZN 4 D, H Histone H2B type 1-J 9606
27 5B33 4 D, H Histone H2B type 1-J 9606
28 5B2I 4 D, H Histone H2B type 1-J 9606
29 5GXQ 4 D, H Histone H2B type 1-J 9606
30 4Z5T 4 D, H Histone H2B type 1-J 9606
31 3AV2 4 D, H Histone H2B type 1-J 9606
32 3AYW 4 D, H Histone H2B type 1-J 9606
33 5XF5 4 D, H Histone H2B type 1-J 9606
34 3AZJ 4 D, H Histone H2B type 1-J 9606
35 5XF4 4 D, H Histone H2B type 1-J 9606
36 5GSE 4 D, H, N Histone H2B type 1-J 9606
37 3AZK 4 D, H Histone H2B type 1-J 9606
38 3AZM 4 D, H Histone H2B type 1-J 9606
39 3WA9 4 D, H Histone H2B type 1-J 9606
40 3AZH 4 D, H Histone H2B type 1-J 9606
41 3WAA 4 D, H Histone H2B type 1-J 9606
42 5CPI 4 D, H Histone H2B type 1-J 9606
43 3W99 4 D, H Histone H2B type 1-J 9606
44 3AZE 4 D, H Histone H2B type 1-J 9606
45 3W96 4 D, H Histone H2B type 1-J 9606
46 5CPJ 4 D, H Histone H2B type 1-J 9606
47 5B24 4 D, H Histone H2B type 1-J 9606
48 4YM5 4 D, H Histone H2B type 1-J 9606
49 4YM6 4 D, H Histone H2B type 1-J 9606
50 3W98 4 D, H Histone H2B type 1-J 9606
51 3AN2 4 D, H Histone H2B type 1-J 9606
52 6BUZ 4 D, H Histone H2B 9606
53 2RVQ 2 D Histone H2B type 1-J 9606