Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 45 319
95 % 54 164 75 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 54 167 78
70 % 54 168 93
50 % 55 172 122
40 % 55 172 144
30 % 55 172 150
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 157 56
95 % 58 176 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 59 181 68
70 % 59 181 83
50 % 59 181 112
40 % 59 181 138
30 % 59 181 142
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 58 242
95 % 47 156 80 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 49 164 76
70 % 51 170 85
50 % 56 180 110
40 % 56 180 137
30 % 56 180 140
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 53 267
95 % 46 153 84 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 46 158 86
70 % 49 165 96
50 % 49 165 134
40 % 49 165 150
30 % 49 165 160
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5X7X 4 D, H Histone H2B type 1-J 9606
6 5B31 4 D, H Histone H2B type 1-J 9606
7 5AVB 4 D, H Histone H2B type 1-J 9606
8 5AVC 4 D, H Histone H2B type 1-J 9606
9 5AV5 4 D, H Histone H2B type 1-J 9606
10 5JRG 4 D, H Histone H2B type 1-J 9606
11 5B32 4 D, H Histone H2B type 1-J 9606
12 3AZG 4 D, H Histone H2B type 1-J 9606
13 5B2J 4 D, H Histone H2B type 1-J 9606
14 5B0Y 4 D, H Histone H2B type 1-J 9606
15 3AZL 4 D, H Histone H2B type 1-J 9606
16 3AFA 4 D, H Histone H2B type 1-J 9606
17 3AZF 4 D, H Histone H2B type 1-J 9606
18 5GTC 4 D, H Histone H2B type 1-J 9606
19 3AV1 4 D, H Histone H2B type 1-J 9606
20 5CPK 4 D, H Histone H2B type 1-J 9606
21 5AY8 4 D, H Histone H2B type 1-J 9606
22 5XF3 4 D, H Histone H2B type 1-J 9606
23 3WTP 4 D, H Histone H2B type 1-J 9606
24 3A6N 4 D, H Histone H2B type 1-J 9606
25 3AZI 4 D, H Histone H2B type 1-J 9606
26 3AZN 4 D, H Histone H2B type 1-J 9606
27 5B33 4 D, H Histone H2B type 1-J 9606
28 5B2I 4 D, H Histone H2B type 1-J 9606
29 5GXQ 4 D, H Histone H2B type 1-J 9606
30 4Z5T 4 D, H Histone H2B type 1-J 9606
31 3AV2 4 D, H Histone H2B type 1-J 9606
32 3AYW 4 D, H Histone H2B type 1-J 9606
33 5XF5 4 D, H Histone H2B type 1-J 9606
34 3AZJ 4 D, H Histone H2B type 1-J 9606
35 5XF4 4 D, H Histone H2B type 1-J 9606
36 5GSE 4 D, H, N Histone H2B type 1-J 9606
37 3AZK 4 D, H Histone H2B type 1-J 9606
38 3AZM 4 D, H Histone H2B type 1-J 9606
39 3WA9 4 D, H Histone H2B type 1-J 9606
40 3AZH 4 D, H Histone H2B type 1-J 9606
41 3WAA 4 D, H Histone H2B type 1-J 9606
42 5CPI 4 D, H Histone H2B type 1-J 9606
43 3W99 4 D, H Histone H2B type 1-J 9606
44 3AZE 4 D, H Histone H2B type 1-J 9606
45 3W96 4 D, H Histone H2B type 1-J 9606
46 5CPJ 4 D, H Histone H2B type 1-J 9606
47 5B24 4 D, H Histone H2B type 1-J 9606
48 4YM5 4 D, H Histone H2B type 1-J 9606
49 4YM6 4 D, H Histone H2B type 1-J 9606
50 3W98 4 D, H Histone H2B type 1-J 9606
51 3AN2 4 D, H Histone H2B type 1-J 9606
52 6BUZ 4 D, H Histone H2B 9606
53 2RVQ 2 D Histone H2B type 1-J 9606