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The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 664 Members. Sequence cutoff: 100% Cluster size: 21 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3AZG 4 D, H Histone H2B type 1-J 9606  
2 3AZL 4 D, H Histone H2B type 1-J 9606  
3 3AFA 4 D, H Histone H2B type 1-J 9606  
4 3AZF 4 D, H Histone H2B type 1-J 9606  
5 3AV1 4 D, H Histone H2B type 1-J 9606  
6 3A6N 4 D, H Histone H2B type 1-J 9606  
7 3AZI 4 D, H Histone H2B type 1-J 9606  
8 3AZN 4 D, H Histone H2B type 1-J 9606  
9 3AV2 4 D, H Histone H2B type 1-J 9606  
10 3AYW 4 D, H Histone H2B type 1-J 9606  
11 3AZJ 4 D, H Histone H2B type 1-J 9606  
12 3AZK 4 D, H Histone H2B type 1-J 9606  
13 3AZM 4 D, H Histone H2B type 1-J 9606  
14 3WA9 4 D, H Histone H2B type 1-J 9606  
15 3AZH 4 D, H Histone H2B type 1-J 9606  
16 3WAA 4 D, H Histone H2B type 1-J 9606  
17 3W99 4 D, H Histone H2B type 1-J 9606  
18 3AZE 4 D, H Histone H2B type 1-J 9606  
19 3W96 4 D, H Histone H2B type 1-J 9606  
20 3W98 4 D, H Histone H2B type 1-J 9606  
21 3AN2 4 D, H Histone H2B type 1-J 9606  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1020
95% 33 96 82
90% 33 99 84
70% 33 99 103
50% 34 101 139
40% 34 101 167
30% 34 101 192
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 83 70
95% 34 98 80
90% 35 102 80
70% 35 102 98
50% 35 102 134
40% 35 102 161
30% 35 102 187
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 617
95% 24 85 87
90% 27 91 91
70% 27 94 104
50% 29 100 131
40% 29 100 158
30% 29 100 184
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 664
95% 25 85 89
90% 25 87 96
70% 27 93 111
50% 27 93 153
40% 27 93 176
30% 27 93 198
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.