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An Information Portal to 111558 Biological Macromolecular Structures

The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 686 Members. Sequence cutoff: 100% Cluster size: 22 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3AZG 4 D, H Histone H2B type 1-J 9606  
2 3AZL 4 D, H Histone H2B type 1-J 9606  
3 3AFA 4 D, H Histone H2B type 1-J 9606  
4 3AZF 4 D, H Histone H2B type 1-J 9606  
5 3AV1 4 D, H Histone H2B type 1-J 9606  
6 3WTP 4 D, H Histone H2B type 1-J 9606  
7 3A6N 4 D, H Histone H2B type 1-J 9606  
8 3AZI 4 D, H Histone H2B type 1-J 9606  
9 3AZN 4 D, H Histone H2B type 1-J 9606  
10 3AV2 4 D, H Histone H2B type 1-J 9606  
11 3AYW 4 D, H Histone H2B type 1-J 9606  
12 3AZJ 4 D, H Histone H2B type 1-J 9606  
13 3AZK 4 D, H Histone H2B type 1-J 9606  
14 3AZM 4 D, H Histone H2B type 1-J 9606  
15 3WA9 4 D, H Histone H2B type 1-J 9606  
16 3AZH 4 D, H Histone H2B type 1-J 9606  
17 3WAA 4 D, H Histone H2B type 1-J 9606  
18 3W99 4 D, H Histone H2B type 1-J 9606  
19 3AZE 4 D, H Histone H2B type 1-J 9606  
20 3W96 4 D, H Histone H2B type 1-J 9606  
21 3W98 4 D, H Histone H2B type 1-J 9606  
22 3AN2 4 D, H Histone H2B type 1-J 9606  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 866
95% 33 100 123
90% 33 103 127
70% 33 103 144
50% 34 106 166
40% 34 106 183
30% 34 106 199
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 90 96
95% 36 107 118
90% 37 111 114
70% 37 111 129
50% 37 111 155
40% 37 111 173
30% 37 111 187
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 622
95% 24 86 138
90% 27 93 134
70% 27 96 149
50% 29 102 167
40% 29 102 184
30% 29 102 200
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 686
95% 25 86 139
90% 25 88 148
70% 27 95 154
50% 27 95 187
40% 27 95 203
30% 27 95 219
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.