Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 45 275
95 % 53 157 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 53 160 77
70 % 53 161 89
50 % 54 164 125
40 % 54 164 141
30 % 54 164 155
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 148 56
95 % 57 167 70 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 58 172 72
70 % 58 172 85
50 % 58 172 117
40 % 58 172 138
30 % 58 172 147
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 57 239
95 % 46 147 78 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.5
PDBFlex
90 % 48 155 78
70 % 50 161 87
50 % 55 171 111
40 % 55 171 134
30 % 55 171 143
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 52 257
95 % 45 143 85 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 45 148 85
70 % 48 155 95
50 % 48 155 133
40 % 48 155 148
30 % 48 155 163
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5X7X 4 D, H Histone H2B type 1-J 9606
6 5B31 4 D, H Histone H2B type 1-J 9606
7 5AVB 4 D, H Histone H2B type 1-J 9606
8 5AVC 4 D, H Histone H2B type 1-J 9606
9 5AV5 4 D, H Histone H2B type 1-J 9606
10 5JRG 4 D, H Histone H2B type 1-J 9606
11 5B32 4 D, H Histone H2B type 1-J 9606
12 3AZG 4 D, H Histone H2B type 1-J 9606
13 5B2J 4 D, H Histone H2B type 1-J 9606
14 5B0Y 4 D, H Histone H2B type 1-J 9606
15 3AZL 4 D, H Histone H2B type 1-J 9606
16 3AFA 4 D, H Histone H2B type 1-J 9606
17 3AZF 4 D, H Histone H2B type 1-J 9606
18 5GTC 4 D, H Histone H2B type 1-J 9606
19 3AV1 4 D, H Histone H2B type 1-J 9606
20 5CPK 4 D, H Histone H2B type 1-J 9606
21 5AY8 4 D, H Histone H2B type 1-J 9606
22 5XF3 4 D, H Histone H2B type 1-J 9606
23 3WTP 4 D, H Histone H2B type 1-J 9606
24 3A6N 4 D, H Histone H2B type 1-J 9606
25 3AZI 4 D, H Histone H2B type 1-J 9606
26 3AZN 4 D, H Histone H2B type 1-J 9606
27 5B33 4 D, H Histone H2B type 1-J 9606
28 5B2I 4 D, H Histone H2B type 1-J 9606
29 5GXQ 4 D, H Histone H2B type 1-J 9606
30 4Z5T 4 D, H Histone H2B type 1-J 9606
31 3AV2 4 D, H Histone H2B type 1-J 9606
32 3AYW 4 D, H Histone H2B type 1-J 9606
33 5XF5 4 D, H Histone H2B type 1-J 9606
34 3AZJ 4 D, H Histone H2B type 1-J 9606
35 5XF4 4 D, H Histone H2B type 1-J 9606
36 5GSE 4 D, H, N Histone H2B type 1-J 9606
37 3AZK 4 D, H Histone H2B type 1-J 9606
38 3AZM 4 D, H Histone H2B type 1-J 9606
39 3WA9 4 D, H Histone H2B type 1-J 9606
40 3AZH 4 D, H Histone H2B type 1-J 9606
41 3WAA 4 D, H Histone H2B type 1-J 9606
42 5CPI 4 D, H Histone H2B type 1-J 9606
43 3W99 4 D, H Histone H2B type 1-J 9606
44 3AZE 4 D, H Histone H2B type 1-J 9606
45 3W96 4 D, H Histone H2B type 1-J 9606
46 5CPJ 4 D, H Histone H2B type 1-J 9606
47 5B24 4 D, H Histone H2B type 1-J 9606
48 4YM5 4 D, H Histone H2B type 1-J 9606
49 4YM6 4 D, H Histone H2B type 1-J 9606
50 3W98 4 D, H Histone H2B type 1-J 9606
51 3AN2 4 D, H Histone H2B type 1-J 9606
52 2RVQ 2 D Histone H2B type 1-J 9606