Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 42 306
95 % 52 150 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 52 153 78
70 % 52 154 96
50 % 53 157 132
40 % 53 157 147
30 % 53 157 161
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 141 76
95 % 56 160 75 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 57 165 75
70 % 57 165 86
50 % 57 165 124
40 % 57 165 140
30 % 57 165 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 54 247
95 % 45 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 47 148 79
70 % 49 154 90
50 % 54 164 120
40 % 54 164 139
30 % 54 164 152
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 48 267
95 % 44 135 111 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 44 140 107
70 % 47 147 103
50 % 47 147 140
40 % 47 147 157
30 % 47 147 174
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5X7X 4 D, H Histone H2B type 1-J 9606
6 5B31 4 D, H Histone H2B type 1-J 9606
7 5AVB 4 D, H Histone H2B type 1-J 9606
8 5AVC 4 D, H Histone H2B type 1-J 9606
9 5AV5 4 D, H Histone H2B type 1-J 9606
10 5JRG 4 D, H Histone H2B type 1-J 9606
11 5B32 4 D, H Histone H2B type 1-J 9606
12 3AZG 4 D, H Histone H2B type 1-J 9606
13 5B2J 4 D, H Histone H2B type 1-J 9606
14 5B0Y 4 D, H Histone H2B type 1-J 9606
15 3AZL 4 D, H Histone H2B type 1-J 9606
16 3AFA 4 D, H Histone H2B type 1-J 9606
17 3AZF 4 D, H Histone H2B type 1-J 9606
18 5GTC 4 D, H Histone H2B type 1-J 9606
19 3AV1 4 D, H Histone H2B type 1-J 9606
20 5CPK 4 D, H Histone H2B type 1-J 9606
21 5AY8 4 D, H Histone H2B type 1-J 9606
22 3WTP 4 D, H Histone H2B type 1-J 9606
23 3A6N 4 D, H Histone H2B type 1-J 9606
24 3AZI 4 D, H Histone H2B type 1-J 9606
25 3AZN 4 D, H Histone H2B type 1-J 9606
26 5B33 4 D, H Histone H2B type 1-J 9606
27 5B2I 4 D, H Histone H2B type 1-J 9606
28 5GXQ 4 D, H Histone H2B type 1-J 9606
29 4Z5T 4 D, H Histone H2B type 1-J 9606
30 3AV2 4 D, H Histone H2B type 1-J 9606
31 3AYW 4 D, H Histone H2B type 1-J 9606
32 3AZJ 4 D, H Histone H2B type 1-J 9606
33 5GSE 4 D, H, N Histone H2B type 1-J 9606
34 3AZK 4 D, H Histone H2B type 1-J 9606
35 3AZM 4 D, H Histone H2B type 1-J 9606
36 3WA9 4 D, H Histone H2B type 1-J 9606
37 3AZH 4 D, H Histone H2B type 1-J 9606
38 3WAA 4 D, H Histone H2B type 1-J 9606
39 5CPI 4 D, H Histone H2B type 1-J 9606
40 3W99 4 D, H Histone H2B type 1-J 9606
41 3AZE 4 D, H Histone H2B type 1-J 9606
42 3W96 4 D, H Histone H2B type 1-J 9606
43 5CPJ 4 D, H Histone H2B type 1-J 9606
44 5B24 4 D, H Histone H2B type 1-J 9606
45 4YM5 4 D, H Histone H2B type 1-J 9606
46 4YM6 4 D, H Histone H2B type 1-J 9606
47 3W98 4 D, H Histone H2B type 1-J 9606
48 3AN2 4 D, H Histone H2B type 1-J 9606