Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 337
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 156
30 % 47 137 178
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 85
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 145
30 % 51 145 164
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 113
90 % 41 128 108
70 % 42 132 113
50 % 45 139 128
40 % 45 139 144
30 % 45 139 163
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 116
90 % 38 121 119
70 % 40 127 125
50 % 40 127 153
40 % 40 127 171
30 % 40 127 187
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5AVB 4 D, H Histone H2B type 1-J 9606
6 5AVC 4 D, H Histone H2B type 1-J 9606
7 5AV5 4 D, H Histone H2B type 1-J 9606
8 3AZG 4 D, H Histone H2B type 1-J 9606
9 5B2J 4 D, H Histone H2B type 1-J 9606
10 5B0Y 4 D, H Histone H2B type 1-J 9606
11 3AZL 4 D, H Histone H2B type 1-J 9606
12 3AFA 4 D, H Histone H2B type 1-J 9606
13 3AZF 4 D, H Histone H2B type 1-J 9606
14 3AV1 4 D, H Histone H2B type 1-J 9606
15 5CPK 4 D, H Histone H2B type 1-J 9606
16 5AY8 4 D, H Histone H2B type 1-J 9606
17 3WTP 4 D, H Histone H2B type 1-J 9606
18 3A6N 4 D, H Histone H2B type 1-J 9606
19 3AZI 4 D, H Histone H2B type 1-J 9606
20 3AZN 4 D, H Histone H2B type 1-J 9606
21 5B2I 4 D, H Histone H2B type 1-J 9606
22 4Z5T 4 D, H Histone H2B type 1-J 9606
23 3AV2 4 D, H Histone H2B type 1-J 9606
24 3AYW 4 D, H Histone H2B type 1-J 9606
25 3AZJ 4 D, H Histone H2B type 1-J 9606
26 3AZK 4 D, H Histone H2B type 1-J 9606
27 3AZM 4 D, H Histone H2B type 1-J 9606
28 3WA9 4 D, H Histone H2B type 1-J 9606
29 3AZH 4 D, H Histone H2B type 1-J 9606
30 3WAA 4 D, H Histone H2B type 1-J 9606
31 5CPI 4 D, H Histone H2B type 1-J 9606
32 3W99 4 D, H Histone H2B type 1-J 9606
33 3AZE 4 D, H Histone H2B type 1-J 9606
34 3W96 4 D, H Histone H2B type 1-J 9606
35 5CPJ 4 D, H Histone H2B type 1-J 9606
36 5B24 4 D, H Histone H2B type 1-J 9606
37 4YM5 4 D, H Histone H2B type 1-J 9606
38 4YM6 4 D, H Histone H2B type 1-J 9606
39 3W98 4 D, H Histone H2B type 1-J 9606
40 3AN2 4 D, H Histone H2B type 1-J 9606