Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 453
95 % 54 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 54 171 79
70 % 54 172 95
50 % 55 176 124
40 % 55 176 145
30 % 55 176 158
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 178 55
95 % 58 181 70 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 59 185 71
70 % 59 185 89
50 % 59 185 118
40 % 59 185 141
30 % 59 185 151
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 51 335
95 % 47 163 79 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 49 171 74
70 % 51 177 90
50 % 56 187 109
40 % 56 187 133
30 % 56 187 144
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 53 294
95 % 46 157 89 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 46 157 92
70 % 49 169 100
50 % 49 169 135
40 % 49 169 151
30 % 49 169 167
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 4 D, H Histone H2B type 1-J 9606
2 5AV8 4 D, H Histone H2B type 1-J 9606
3 5AV9 4 D, H Histone H2B type 1-J 9606
4 5AV6 4 D, H Histone H2B type 1-J 9606
5 5X7X 4 D, H Histone H2B type 1-J 9606
6 5B31 4 D, H Histone H2B type 1-J 9606
7 5B1L 4 D, H Histone H2B type 3-A 10090
8 5AVB 4 D, H Histone H2B type 1-J 9606
9 5AVC 4 D, H Histone H2B type 1-J 9606
10 5AV5 4 D, H Histone H2B type 1-J 9606
11 5B1M 4 D, H Histone H2B type 3-A 10090
12 5JRG 4 D, H Histone H2B type 1-J 9606
13 5B32 4 D, H Histone H2B type 1-J 9606
14 3AZG 4 D, H Histone H2B type 1-J 9606
15 5B2J 4 D, H Histone H2B type 1-J 9606
16 5B0Y 4 D, H Histone H2B type 1-J 9606
17 3AZL 4 D, H Histone H2B type 1-J 9606
18 3AFA 4 D, H Histone H2B type 1-J 9606
19 3AZF 4 D, H Histone H2B type 1-J 9606
20 5GTC 4 D, H Histone H2B type 1-J 9606
21 3AV1 4 D, H Histone H2B type 1-J 9606
22 5CPK 4 D, H Histone H2B type 1-J 9606
23 5AY8 4 D, H Histone H2B type 1-J 9606
24 3WTP 4 D, H Histone H2B type 1-J 9606
25 3A6N 4 D, H Histone H2B type 1-J 9606
26 3AZI 4 D, H Histone H2B type 1-J 9606
27 3AZN 4 D, H Histone H2B type 1-J 9606
28 5B33 4 D, H Histone H2B type 1-J 9606
29 5B2I 4 D, H Histone H2B type 1-J 9606
30 5GXQ 4 D, H Histone H2B type 1-J 9606
31 4Z5T 4 D, H Histone H2B type 1-J 9606
32 5XM0 4 D, H Histone H2B type 3-A 10090
33 3AV2 4 D, H Histone H2B type 1-J 9606
34 3AYW 4 D, H Histone H2B type 1-J 9606
35 3AZJ 4 D, H Histone H2B type 1-J 9606
36 5GSE 4 D, H, N Histone H2B type 1-J 9606
37 3AZK 4 D, H Histone H2B type 1-J 9606
38 3AZM 4 D, H Histone H2B type 1-J 9606
39 3WA9 4 D, H Histone H2B type 1-J 9606
40 3AZH 4 D, H Histone H2B type 1-J 9606
41 5B40 4 D, H Histone H2B type 1-J 9606
42 3WAA 4 D, H Histone H2B type 1-J 9606
43 5CPI 4 D, H Histone H2B type 1-J 9606
44 3W99 4 D, H Histone H2B type 1-J 9606
45 3AZE 4 D, H Histone H2B type 1-J 9606
46 3W96 4 D, H Histone H2B type 1-J 9606
47 5XM1 4 D, H Histone H2B type 3-A 10090
48 5CPJ 4 D, H Histone H2B type 1-J 9606
49 5B24 4 D, H Histone H2B type 1-J 9606
50 4YM5 4 D, H Histone H2B type 1-J 9606
51 4YM6 4 D, H Histone H2B type 1-J 9606
52 3W98 4 D, H Histone H2B type 1-J 9606
53 3AN2 4 D, H Histone H2B type 1-J 9606