Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 333
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 156
30 % 47 137 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 84
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 144
30 % 51 145 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 112
90 % 41 128 108
70 % 42 132 112
50 % 45 139 128
40 % 45 139 143
30 % 45 139 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 116
90 % 38 121 118
70 % 40 127 125
50 % 40 127 152
40 % 40 127 171
30 % 40 127 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 1S32 4 C, G histone H2A 8355
6 5AV8 3 C, G Histone H2A type 1-B/E 9606
7 1KX3 4 C, G histone H2A.1 8355
8 5AV9 3 C, G Histone H2A type 1-B/E 9606
9 5AV6 3 C, G Histone H2A type 1-B/E 9606
10 1HQ3 1 A, E HISTONE H2A-IV 9031
11 3UTA 3 C, G Histone H2A 8355
12 4KHA 2 B Histone H2A UNP residues 15-103 8355
13 3UTB 3 C, G Histone H2A 8355
14 1M19 4 C, G Histone H2A.1 8355
15 5AVB 3 C, G Histone H2A type 1-B/E 9606
16 5AVC 3 C, G Histone H2A type 1-B/E 9606
17 5AV5 3 C, G Histone H2A type 1-B/E 9606
18 3C1B 3 C, G Histone H2A type 1 8355
19 2NQB 4 C, G Histone H2A 7227
20 5F99 3 C, G Histone H2A type 1 8355
21 3UT9 3 C, G Histone H2A 8355
22 4WU8 5 C, G Histone H2A type 1 8355
23 1P3I 4 C, G Histone H2A 8355
24 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
25 3AZG 3 C, G Histone H2A type 1-B/E 9606
26 1M18 4 C, G Histone H2A.1 8355
27 5B2J 3 C, G Histone H2A type 1-B/E 9606
28 2PYO 5 C, G Histone H2A 7227
29 1P3L 4 C, G Histone H2A 8355
30 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
31 5B0Y 3 C, G Histone H2A type 1-B/E 9606
32 2CV5 4 C, G Histone H2A.a 9606
33 5CP6 5 C, G Histone H2A 8355
34 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
35 3MVD 3 C, G Histone H2A 8355
36 4J8U 3 C, G Histone H2A type 1 8355
37 4WU9 3 C, G Histone H2A type 1 8355
38 3REH 3 C, G Histone H2A type 1 8355
39 3AZL 3 C, G Histone H2A type 1-B/E 9606
40 4XZQ 3 C, G Histone H2A residues 15-121 8355
41 3AFA 3 C, G Histone H2A type 1-B/E 9606
42 5E5A 4 C, G Histone H2A 8355
43 3REJ 3 C, G Histone H2A type 1 8355
44 3AZF 3 C, G Histone H2A type 1-B/E 9606
45 1P3P 4 C, G Histone H2A 8355
46 3AV1 3 C, G Histone H2A type 1-B/E 9606
47 1M1A 4 C, G Histone H2A.1 8355
48 5CPK 3 C, G Histone H2A type 1-B/E 9606
49 5AY8 3 C, G Histone H2A type 1-B/E 9606
50 3MNN 3 C, G Histone H2A 8355
51 1P3G 4 C, G Histone H2A 8355
52 4J8W 3 C, G Histone H2A 8355
53 1P34 4 C, G Histone H2A 8355
54 3X1V 4 C, G Histone H2A type 1-B/E 9606
55 4Z66 3 C, G Histone H2A 8355
56 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
57 3WTP 3 C, G Histone H2A type 1-B/E 9606
58 3X1T 4 C, G Histone H2A 10090
59 2NZD 5 C, G histone H2A 8355
60 3A6N 3 C, G Histone H2A type 1-B/E 9606
61 3LJA 3 C, G Histone H2A 8355
62 3AZI 3 C, G Histone H2A type 1-B/E 9606
63 3TU4 3 C, G Histone H2A 8355
64 1P3O 4 C, G Histone H2A 8355
65 1KX4 4 C, G histone H2A.1 8355
66 3AZN 3 C, G Histone H2A type 1-B/E 9606
67 1P3M 4 C, G Histone H2A 8355
68 4J8V 3 C, G Histone H2A 8355
69 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
70 3X1S 3 C, G Histone H2A type 1-B/E 9606
71 3LZ0 3 C, G Histone H2A residues 2-120 8355
72 1P3F 4 C, G Histone H2A 8355
73 1P3K 4 C, G Histone H2A 8355
74 5B2I 3 C, G Histone H2A type 1-B/E 9606
75 1P3A 4 C, G Histone H2A 8355
76 3LZ1 3 C, G Histone H2A residues 2-120 8355
77 4Z5T 3 C, G Histone H2A type 1-B/E 9606
78 3AV2 3 C, G Histone H2A type 1-B/E 9606
79 3AYW 3 C, G Histone H2A type 1-B/E 9606
80 3AZJ 3 C, G Histone H2A type 1-B/E 9606
81 3REK 3 C, G Histone H2A type1 8355
82 4KGC 3 C, G Histone H2A 8355
83 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
84 3REL 3 C, G Histone H2A 8355
85 3REI 3 C, G Histone H2A type1 8355
86 1P3B 4 C, G Histone H2A 8355
87 3WKJ 3 C, G Histone H2A type 1-B/E 9606
88 3AZK 3 C, G Histone H2A type 1-B/E 9606
89 4J8X 3 C, G Histone H2A 8355
90 3LEL 3 C, G, M, Q Histone H2A 8355
91 4YS3 3 C, G Histone H2A residues 15-121 8355
92 3KUY 3 C, G Histone H2A 8355
93 4R8P 3 C, G Histone H2A 8355
94 3AZM 3 C, G Histone H2A type 1-B/E 9606
95 3X1U 4 C, G Histone H2A 10090
96 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
97 3C1C 3 C, G Histone H2A type 1 8355
98 3AZH 3 C, G Histone H2A type 1-B/E 9606
99 5B40 3 C, G Histone H2A type 1-B/E 9606
100 5CPI 3 C, G Histone H2A type 1-B/E 9606
101 3W99 3 C, G Histone H2A type 1-B/E 9606
102 3AZE 3 C, G Histone H2A type 1-B/E 9606
103 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
104 5CPJ 3 C, G Histone H2A type 1-B/E 9606
105 5B24 3 C, G Histone H2A type 1-B/E 9606
106 2HIO 1 A PROTEIN (HISTONE H2A) 9031
107 1HIO 1 A HISTONE H2A 9031
108 4QLC 5 C, G Histone H2A 7227
109 4LD9 3 C, G Histone H2A 8355
110 3O62 3 C, G Histone H2A type 1 8355
111 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
112 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
113 3W97 3 C, G Histone H2A type 1-B/E 9606
114 4YM5 3 C, G Histone H2A type 1-B/E 9606
115 4YM6 3 C, G Histone H2A type 1-B/E 9606
116 2FJ7 5 C, G histone H2A 8355
117 3W98 3 C, G Histone H2A type 1-B/E 9606
118 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
119 3AN2 3 C, G Histone H2A type 1-B/E 9606
120 3B6F 5 C, G Histone H2A 8355
121 3B6G 5 C, G Histone H2A 8355
122 3KXB 3 C, G Histone H2A 8355
123 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
124 5HQ2 3 G Histone H2A 8355
125 1ZBB 5 C, G, c, g Histone H2A.1 8355
126 2RVQ 1 C Histone H2A type 1-B/E 9606
127 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
128 3C9K 1 A, E Histone H2A-IV 9031