Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 326
95 % 52 147 80
90 % 52 150 78
70 % 52 151 97
50 % 53 154 134
40 % 53 154 149
30 % 53 154 165
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 138 77
95 % 56 157 73
90 % 57 162 73
70 % 57 162 87
50 % 57 162 123
40 % 57 162 140
30 % 57 162 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 52 251
95 % 44 133 110
90 % 47 144 83
70 % 49 150 93
50 % 54 160 120
40 % 54 160 138
30 % 54 160 153
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 46 271
95 % 44 132 113
90 % 44 137 111
70 % 47 144 106
50 % 47 144 143
40 % 47 144 159
30 % 47 144 178
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 1S32 4 C, G histone H2A 8355
6 5AV8 3 C, G Histone H2A type 1-B/E 9606
7 1KX3 4 C, G histone H2A.1 8355
8 5AV9 3 C, G Histone H2A type 1-B/E 9606
9 5AV6 3 C, G Histone H2A type 1-B/E 9606
10 1HQ3 1 A, E HISTONE H2A-IV 9031
11 3UTA 3 C, G Histone H2A 8355
12 4KHA 2 B Histone H2A UNP residues 15-103 8355
13 5X7X 3 C, G Histone H2A type 1-B/E 9606
14 5B31 3 C Histone H2A type 1-B/E 9606
15 5B1L 3 C, G Histone H2A type 1 10090
16 3UTB 3 C, G Histone H2A 8355
17 1M19 4 C, G Histone H2A.1 8355
18 5AVB 3 C, G Histone H2A type 1-B/E 9606
19 5AVC 3 C, G Histone H2A type 1-B/E 9606
20 5AV5 3 C, G Histone H2A type 1-B/E 9606
21 3C1B 3 C, G Histone H2A type 1 8355
22 5B1M 3 C, G Histone H2A type 1 10090
23 2NQB 4 C, G Histone H2A 7227
24 5F99 3 C, G Histone H2A type 1 8355
25 5JRG 3 C, G Histone H2A type 1-B/E 9606
26 3UT9 3 C, G Histone H2A 8355
27 5B32 3 C Histone H2A type 1-B/E 9606
28 4WU8 5 C, G Histone H2A type 1 8355
29 1P3I 4 C, G Histone H2A 8355
30 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
31 3AZG 3 C, G Histone H2A type 1-B/E 9606
32 1M18 4 C, G Histone H2A.1 8355
33 5B2J 3 C, G Histone H2A type 1-B/E 9606
34 2PYO 5 C, G Histone H2A 7227
35 1P3L 4 C, G Histone H2A 8355
36 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 3 C, G Histone H2A type 1-B/E 9606
38 2CV5 4 C, G Histone H2A.a 9606
39 5CP6 5 C, G Histone H2A 8355
40 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
41 3MVD 3 C, G Histone H2A 8355
42 4J8U 3 C, G Histone H2A type 1 8355
43 4WU9 3 C, G Histone H2A type 1 8355
44 3REH 3 C, G Histone H2A type 1 8355
45 3AZL 3 C, G Histone H2A type 1-B/E 9606
46 4XZQ 3 C, G Histone H2A residues 15-121 8355
47 3AFA 3 C, G Histone H2A type 1-B/E 9606
48 5E5A 4 C, G Histone H2A 8355
49 3REJ 3 C, G Histone H2A type 1 8355
50 3AZF 3 C, G Histone H2A type 1-B/E 9606
51 1P3P 4 C, G Histone H2A 8355
52 3AV1 3 C, G Histone H2A type 1-B/E 9606
53 1M1A 4 C, G Histone H2A.1 8355
54 5CPK 3 C, G Histone H2A type 1-B/E 9606
55 5AY8 3 C, G Histone H2A type 1-B/E 9606
56 3MNN 3 C, G Histone H2A 8355
57 1P3G 4 C, G Histone H2A 8355
58 4J8W 3 C, G Histone H2A 8355
59 1P34 4 C, G Histone H2A 8355
60 3X1V 4 C, G Histone H2A type 1-B/E 9606
61 5DNM 3 C, G Histone H2A 8355
62 4Z66 3 C, G Histone H2A 8355
63 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
64 3WTP 3 C, G Histone H2A type 1-B/E 9606
65 3X1T 4 C, G Histone H2A 10090
66 2NZD 5 C, G histone H2A 8355
67 3A6N 3 C, G Histone H2A type 1-B/E 9606
68 5DNN 3 C, G Histone H2A 8355
69 5GT3 3 C, G Histone H2A type 1-D 9606
70 5GT0 3 C, G Histone H2A type 1-A 9606
71 3LJA 3 C, G Histone H2A 8355
72 3AZI 3 C, G Histone H2A type 1-B/E 9606
73 3TU4 3 C, G Histone H2A 8355
74 1P3O 4 C, G Histone H2A 8355
75 1KX4 4 C, G histone H2A.1 8355
76 3AZN 3 C, G Histone H2A type 1-B/E 9606
77 1P3M 4 C, G Histone H2A 8355
78 4J8V 3 C, G Histone H2A 8355
79 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
80 3X1S 3 C, G Histone H2A type 1-B/E 9606
81 3LZ0 3 C, G Histone H2A residues 2-120 8355
82 1P3F 4 C, G Histone H2A 8355
83 1P3K 4 C, G Histone H2A 8355
84 5B2I 3 C, G Histone H2A type 1-B/E 9606
85 1P3A 4 C, G Histone H2A 8355
86 3LZ1 3 C, G Histone H2A residues 2-120 8355
87 5GXQ 3 C, G Histone H2A type 1-B/E 9606
88 4Z5T 3 C, G Histone H2A type 1-B/E 9606
89 3AV2 3 C, G Histone H2A type 1-B/E 9606
90 3AYW 3 C, G Histone H2A type 1-B/E 9606
91 3AZJ 3 C, G Histone H2A type 1-B/E 9606
92 3REK 3 C, G Histone H2A type1 8355
93 4KGC 3 C, G Histone H2A 8355
94 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
95 5GSU 3 C, G Histone H2A type 1-A 9606
96 3REL 3 C, G Histone H2A 8355
97 3REI 3 C, G Histone H2A type1 8355
98 1P3B 4 C, G Histone H2A 8355
99 3WKJ 3 C, G Histone H2A type 1-B/E 9606
100 3AZK 3 C, G Histone H2A type 1-B/E 9606
101 4J8X 3 C, G Histone H2A 8355
102 3LEL 3 C, G, M, Q Histone H2A 8355
103 4YS3 3 C, G Histone H2A residues 15-121 8355
104 3KUY 3 C, G Histone H2A 8355
105 4R8P 3 C, G Histone H2A 8355
106 3AZM 3 C, G Histone H2A type 1-B/E 9606
107 3X1U 4 C, G Histone H2A 10090
108 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
109 3C1C 3 C, G Histone H2A type 1 8355
110 3AZH 3 C, G Histone H2A type 1-B/E 9606
111 5B40 3 C, G Histone H2A type 1-B/E 9606
112 5CPI 3 C, G Histone H2A type 1-B/E 9606
113 3W99 3 C, G Histone H2A type 1-B/E 9606
114 3AZE 3 C, G Histone H2A type 1-B/E 9606
115 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
116 5CPJ 3 C, G Histone H2A type 1-B/E 9606
117 5B24 3 C, G Histone H2A type 1-B/E 9606
118 2HIO 1 A PROTEIN (HISTONE H2A) 9031
119 1HIO 1 A HISTONE H2A 9031
120 4QLC 5 C, G Histone H2A 7227
121 4LD9 3 C, G Histone H2A 8355
122 3O62 3 C, G Histone H2A type 1 8355
123 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
124 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
125 3W97 3 C, G Histone H2A type 1-B/E 9606
126 4YM5 3 C, G Histone H2A type 1-B/E 9606
127 4YM6 3 C, G Histone H2A type 1-B/E 9606
128 2FJ7 5 C, G histone H2A 8355
129 3W98 3 C, G Histone H2A type 1-B/E 9606
130 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
131 3AN2 3 C, G Histone H2A type 1-B/E 9606
132 3B6F 5 C, G Histone H2A 8355
133 3B6G 5 C, G Histone H2A 8355
134 3KXB 3 C, G Histone H2A 8355
135 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
136 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
137 5HQ2 3 G Histone H2A 8355
138 1ZBB 5 C, G, c, g Histone H2A.1 8355
139 5X0X 3 C, G Histone H2A 8355
140 5X0Y 3 C, G Histone H2A 8355
141 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
142 2RVQ 1 C Histone H2A type 1-B/E 9606
143 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
144 3C9K 1 A, E Histone H2A-IV 9031