Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 324
95 % 48 137 100
90 % 48 140 88
70 % 48 141 100
50 % 49 144 133
40 % 49 144 152
30 % 49 144 170
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 128 83
95 % 52 147 73
90 % 53 152 74
70 % 53 152 88
50 % 53 152 126
40 % 53 152 143
30 % 53 152 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 248
95 % 40 125 111
90 % 43 134 96
70 % 44 138 94
50 % 49 148 124
40 % 49 148 142
30 % 49 148 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 267
95 % 40 124 113
90 % 40 127 116
70 % 42 133 120
50 % 42 133 149
40 % 42 133 166
30 % 42 133 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 1S32 4 C, G histone H2A 8355
6 5AV8 3 C, G Histone H2A type 1-B/E 9606
7 1KX3 4 C, G histone H2A.1 8355
8 5AV9 3 C, G Histone H2A type 1-B/E 9606
9 5AV6 3 C, G Histone H2A type 1-B/E 9606
10 1HQ3 1 A, E HISTONE H2A-IV 9031
11 3UTA 3 C, G Histone H2A 8355
12 4KHA 2 B Histone H2A UNP residues 15-103 8355
13 5B31 3 C Histone H2A type 1-B/E 9606
14 3UTB 3 C, G Histone H2A 8355
15 1M19 4 C, G Histone H2A.1 8355
16 5AVB 3 C, G Histone H2A type 1-B/E 9606
17 5AVC 3 C, G Histone H2A type 1-B/E 9606
18 5AV5 3 C, G Histone H2A type 1-B/E 9606
19 3C1B 3 C, G Histone H2A type 1 8355
20 2NQB 4 C, G Histone H2A 7227
21 5F99 3 C, G Histone H2A type 1 8355
22 3UT9 3 C, G Histone H2A 8355
23 5B32 3 C Histone H2A type 1-B/E 9606
24 4WU8 5 C, G Histone H2A type 1 8355
25 1P3I 4 C, G Histone H2A 8355
26 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
27 3AZG 3 C, G Histone H2A type 1-B/E 9606
28 1M18 4 C, G Histone H2A.1 8355
29 5B2J 3 C, G Histone H2A type 1-B/E 9606
30 2PYO 5 C, G Histone H2A 7227
31 1P3L 4 C, G Histone H2A 8355
32 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
33 5B0Y 3 C, G Histone H2A type 1-B/E 9606
34 2CV5 4 C, G Histone H2A.a 9606
35 5CP6 5 C, G Histone H2A 8355
36 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
37 3MVD 3 C, G Histone H2A 8355
38 4J8U 3 C, G Histone H2A type 1 8355
39 4WU9 3 C, G Histone H2A type 1 8355
40 3REH 3 C, G Histone H2A type 1 8355
41 3AZL 3 C, G Histone H2A type 1-B/E 9606
42 4XZQ 3 C, G Histone H2A residues 15-121 8355
43 3AFA 3 C, G Histone H2A type 1-B/E 9606
44 5E5A 4 C, G Histone H2A 8355
45 3REJ 3 C, G Histone H2A type 1 8355
46 3AZF 3 C, G Histone H2A type 1-B/E 9606
47 1P3P 4 C, G Histone H2A 8355
48 3AV1 3 C, G Histone H2A type 1-B/E 9606
49 1M1A 4 C, G Histone H2A.1 8355
50 5CPK 3 C, G Histone H2A type 1-B/E 9606
51 5AY8 3 C, G Histone H2A type 1-B/E 9606
52 3MNN 3 C, G Histone H2A 8355
53 1P3G 4 C, G Histone H2A 8355
54 4J8W 3 C, G Histone H2A 8355
55 1P34 4 C, G Histone H2A 8355
56 3X1V 4 C, G Histone H2A type 1-B/E 9606
57 5DNM 3 C, G Histone H2A 8355
58 4Z66 3 C, G Histone H2A 8355
59 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
60 3WTP 3 C, G Histone H2A type 1-B/E 9606
61 3X1T 4 C, G Histone H2A 10090
62 2NZD 5 C, G histone H2A 8355
63 3A6N 3 C, G Histone H2A type 1-B/E 9606
64 5DNN 3 C, G Histone H2A 8355
65 3LJA 3 C, G Histone H2A 8355
66 3AZI 3 C, G Histone H2A type 1-B/E 9606
67 3TU4 3 C, G Histone H2A 8355
68 1P3O 4 C, G Histone H2A 8355
69 1KX4 4 C, G histone H2A.1 8355
70 3AZN 3 C, G Histone H2A type 1-B/E 9606
71 1P3M 4 C, G Histone H2A 8355
72 4J8V 3 C, G Histone H2A 8355
73 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
74 3X1S 3 C, G Histone H2A type 1-B/E 9606
75 3LZ0 3 C, G Histone H2A residues 2-120 8355
76 1P3F 4 C, G Histone H2A 8355
77 1P3K 4 C, G Histone H2A 8355
78 5B2I 3 C, G Histone H2A type 1-B/E 9606
79 1P3A 4 C, G Histone H2A 8355
80 3LZ1 3 C, G Histone H2A residues 2-120 8355
81 4Z5T 3 C, G Histone H2A type 1-B/E 9606
82 3AV2 3 C, G Histone H2A type 1-B/E 9606
83 3AYW 3 C, G Histone H2A type 1-B/E 9606
84 3AZJ 3 C, G Histone H2A type 1-B/E 9606
85 3REK 3 C, G Histone H2A type1 8355
86 4KGC 3 C, G Histone H2A 8355
87 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
88 3REL 3 C, G Histone H2A 8355
89 3REI 3 C, G Histone H2A type1 8355
90 1P3B 4 C, G Histone H2A 8355
91 3WKJ 3 C, G Histone H2A type 1-B/E 9606
92 3AZK 3 C, G Histone H2A type 1-B/E 9606
93 4J8X 3 C, G Histone H2A 8355
94 3LEL 3 C, G, M, Q Histone H2A 8355
95 4YS3 3 C, G Histone H2A residues 15-121 8355
96 3KUY 3 C, G Histone H2A 8355
97 4R8P 3 C, G Histone H2A 8355
98 3AZM 3 C, G Histone H2A type 1-B/E 9606
99 3X1U 4 C, G Histone H2A 10090
100 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
101 3C1C 3 C, G Histone H2A type 1 8355
102 3AZH 3 C, G Histone H2A type 1-B/E 9606
103 5B40 3 C, G Histone H2A type 1-B/E 9606
104 5CPI 3 C, G Histone H2A type 1-B/E 9606
105 3W99 3 C, G Histone H2A type 1-B/E 9606
106 3AZE 3 C, G Histone H2A type 1-B/E 9606
107 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
108 5CPJ 3 C, G Histone H2A type 1-B/E 9606
109 5B24 3 C, G Histone H2A type 1-B/E 9606
110 2HIO 1 A PROTEIN (HISTONE H2A) 9031
111 1HIO 1 A HISTONE H2A 9031
112 4QLC 5 C, G Histone H2A 7227
113 4LD9 3 C, G Histone H2A 8355
114 3O62 3 C, G Histone H2A type 1 8355
115 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
116 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
117 3W97 3 C, G Histone H2A type 1-B/E 9606
118 4YM5 3 C, G Histone H2A type 1-B/E 9606
119 4YM6 3 C, G Histone H2A type 1-B/E 9606
120 2FJ7 5 C, G histone H2A 8355
121 3W98 3 C, G Histone H2A type 1-B/E 9606
122 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
123 3AN2 3 C, G Histone H2A type 1-B/E 9606
124 3B6F 5 C, G Histone H2A 8355
125 3B6G 5 C, G Histone H2A 8355
126 3KXB 3 C, G Histone H2A 8355
127 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
128 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
129 5HQ2 3 G Histone H2A 8355
130 1ZBB 5 C, G, c, g Histone H2A.1 8355
131 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
132 2RVQ 1 C Histone H2A type 1-B/E 9606
133 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
134 3C9K 1 A, E Histone H2A-IV 9031