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The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 91 Members. Sequence cutoff: 90% Cluster size: 92 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1TZY 1 A, E Histone H2A-IV 9031  
2 1KX5 5 C, G histone H2A.1 8355  
3 2ARO 1 A, E Histone H2A-IV 9031  
4 1S32 4 C, G histone H2A 8355  
5 1KX3 4 C, G histone H2A.1 8355  
6 1HQ3 1 A, E HISTONE H2A-IV 9031  
7 3UTA 3 C, G Histone H2A 8355  
8 4KHA 2 B Histone H2A UNP residues 15-103 8355  
9 3UTB 3 C, G Histone H2A 8355  
10 1M19 4 C, G Histone H2A.1 8355  
11 3C1B 3 C, G Histone H2A type 1 8355  
12 2NQB 4 C, G Histone H2A 7227  
13 3UT9 3 C, G Histone H2A 8355  
14 1P3I 4 C, G Histone H2A 8355  
15 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355  
16 3AZG 3 C, G Histone H2A type 1-B/E 9606  
17 1M18 4 C, G Histone H2A.1 8355  
18 2PYO 5 C, G Histone H2A 7227  
19 1P3L 4 C, G Histone H2A 8355  
20 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031  
21 2CV5 4 C, G Histone H2A.a 9606  
22 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355  
23 3MVD 3 C, G Histone H2A 8355  
24 4J8U 3 C, G Histone H2A type 1 8355  
25 3REH 3 C, G Histone H2A type 1 8355  
26 3AZL 3 C, G Histone H2A type 1-B/E 9606  
27 3AFA 3 C, G Histone H2A type 1-B/E 9606  
28 3REJ 3 C, G Histone H2A type 1 8355  
29 3AZF 3 C, G Histone H2A type 1-B/E 9606  
30 1P3P 4 C, G Histone H2A 8355  
31 3AV1 3 C, G Histone H2A type 1-B/E 9606  
32 1M1A 4 C, G Histone H2A.1 8355  
33 3MNN 3 C, G Histone H2A 8355  
34 1P3G 4 C, G Histone H2A 8355  
35 4J8W 3 C, G Histone H2A 8355  
36 1P34 4 C, G Histone H2A 8355  
37 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355  
38 3WTP 3 C, G Histone H2A type 1-B/E 9606  
39 2NZD 5 C, G histone H2A 8355  
40 3A6N 3 C, G Histone H2A type 1-B/E 9606  
41 3LJA 3 C, G Histone H2A 8355  
42 3AZI 3 C, G Histone H2A type 1-B/E 9606  
43 3TU4 3 C, G Histone H2A 8355  
44 1P3O 4 C, G Histone H2A 8355  
45 1KX4 4 C, G histone H2A.1 8355  
46 3AZN 3 C, G Histone H2A type 1-B/E 9606  
47 1P3M 4 C, G Histone H2A 8355  
48 4J8V 3 C, G Histone H2A 8355  
49 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355  
50 3LZ0 3 C, G Histone H2A residues 2-120 8355  
51 1P3F 4 C, G Histone H2A 8355  
52 1P3K 4 C, G Histone H2A 8355  
53 1P3A 4 C, G Histone H2A 8355  
54 3LZ1 3 C, G Histone H2A residues 2-120 8355  
55 3AV2 3 C, G Histone H2A type 1-B/E 9606  
56 3AYW 3 C, G Histone H2A type 1-B/E 9606  
57 3AZJ 3 C, G Histone H2A type 1-B/E 9606  
58 3REK 3 C, G Histone H2A type1 8355  
59 4KGC 3 C, G Histone H2A 8355  
60 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730  
61 3REL 3 C, G Histone H2A 8355  
62 3REI 3 C, G Histone H2A type1 8355  
63 1P3B 4 C, G Histone H2A 8355  
64 3WKJ 3 C, G Histone H2A type 1-B/E 9606  
65 3AZK 3 C, G Histone H2A type 1-B/E 9606  
66 4J8X 3 C, G Histone H2A 8355  
67 3LEL 3 C, G, M, Q Histone H2A 8355  
68 3KUY 3 C, G Histone H2A 8355  
69 4R8P 3 C, G Histone H2A 8355  
70 3AZM 3 C, G Histone H2A type 1-B/E 9606  
71 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355  
72 3C1C 3 C, G Histone H2A type 1 8355  
73 3AZH 3 C, G Histone H2A type 1-B/E 9606  
74 3W99 3 C, G Histone H2A type 1-B/E 9606  
75 3AZE 3 C, G Histone H2A type 1-B/E 9606  
76 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606  
77 2HIO 1 A PROTEIN (HISTONE H2A) 9031  
78 1HIO 1 A HISTONE H2A 9031  
79 4LD9 3 C, G Histone H2A 8355  
80 3O62 3 C, G Histone H2A type 1 8355  
81 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227  
82 3W97 3 C, G Histone H2A type 1-B/E 9606  
83 2FJ7 5 C, G histone H2A 8355  
84 3W98 3 C, G Histone H2A type 1-B/E 9606  
85 3AN2 3 C, G Histone H2A type 1-B/E 9606  
86 3B6F 5 C, G Histone H2A 8355  
87 3B6G 5 C, G Histone H2A 8355  
88 3KXB 3 C, G Histone H2A 8355  
89 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355  
90 1ZBB 5 C, G, c, g Histone H2A.1 8355  
91 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031  
92 3C9K 1 A, E Histone H2A-IV 9031  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1029
95% 33 97 84
90% 33 100 88
70% 33 100 111
50% 34 103 143
40% 34 103 171
30% 34 103 192
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 84 74
95% 34 99 82
90% 35 103 81
70% 35 103 99
50% 35 103 137
40% 35 103 166
30% 35 103 188
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 568
95% 24 86 97
90% 27 92 91
70% 27 95 110
50% 29 101 134
40% 29 101 164
30% 29 101 186
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 633
95% 25 86 105
90% 25 88 104
70% 27 94 113
50% 27 94 155
40% 27 94 182
30% 27 94 202
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.