Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 105
90 % 44 129 105
70 % 44 130 118
50 % 45 133 143
40 % 45 133 157
30 % 45 133 176
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 87
95 % 47 135 80
90 % 48 140 80
70 % 48 140 94
50 % 48 140 131
40 % 48 140 145
30 % 48 140 164
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 114
90 % 39 123 108
70 % 40 127 108
50 % 43 134 130
40 % 43 134 144
30 % 43 134 163
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 118
90 % 36 116 119
70 % 38 122 129
50 % 38 122 155
40 % 38 122 170
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WNN 1 A, C, E, G Histone H2A.1 4932
2 1TZY 1 A, E Histone H2A-IV 9031
3 1KX5 5 C, G histone H2A.1 8355
4 2ARO 1 A, E Histone H2A-IV 9031
5 5B0Z 3 C, G Histone H2A type 1-B/E 9606
6 1S32 4 C, G histone H2A 8355
7 5AV8 3 C, G Histone H2A type 1-B/E 9606
8 1KX3 4 C, G histone H2A.1 8355
9 5AV9 3 C, G Histone H2A type 1-B/E 9606
10 5AV6 3 C, G Histone H2A type 1-B/E 9606
11 1HQ3 1 A, E HISTONE H2A-IV 9031
12 3UTA 3 C, G Histone H2A 8355
13 4KHA 2 B Histone H2A UNP residues 15-103 8355
14 3UTB 3 C, G Histone H2A 8355
15 1M19 4 C, G Histone H2A.1 8355
16 5AVB 3 C, G Histone H2A type 1-B/E 9606
17 5AVC 3 C, G Histone H2A type 1-B/E 9606
18 5AV5 3 C, G Histone H2A type 1-B/E 9606
19 3C1B 3 C, G Histone H2A type 1 8355
20 2NQB 4 C, G Histone H2A 7227
21 5F99 3 C, G Histone H2A type 1 8355
22 3UT9 3 C, G Histone H2A 8355
23 4WU8 5 C, G Histone H2A type 1 8355
24 1P3I 4 C, G Histone H2A 8355
25 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
26 3AZG 3 C, G Histone H2A type 1-B/E 9606
27 1M18 4 C, G Histone H2A.1 8355
28 2PYO 5 C, G Histone H2A 7227
29 1P3L 4 C, G Histone H2A 8355
30 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
31 5B0Y 3 C, G Histone H2A type 1-B/E 9606
32 2CV5 4 C, G Histone H2A.a 9606
33 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
34 3MVD 3 C, G Histone H2A 8355
35 4J8U 3 C, G Histone H2A type 1 8355
36 4WU9 3 C, G Histone H2A type 1 8355
37 3REH 3 C, G Histone H2A type 1 8355
38 3AZL 3 C, G Histone H2A type 1-B/E 9606
39 4XZQ 3 C, G Histone H2A residues 15-121 8355
40 3AFA 3 C, G Histone H2A type 1-B/E 9606
41 5E5A 4 C, G Histone H2A 8355
42 3REJ 3 C, G Histone H2A type 1 8355
43 3AZF 3 C, G Histone H2A type 1-B/E 9606
44 1P3P 4 C, G Histone H2A 8355
45 3AV1 3 C, G Histone H2A type 1-B/E 9606
46 1M1A 4 C, G Histone H2A.1 8355
47 5CPK 3 C, G Histone H2A type 1-B/E 9606
48 5AY8 3 C, G Histone H2A type 1-B/E 9606
49 3MNN 3 C, G Histone H2A 8355
50 1P3G 4 C, G Histone H2A 8355
51 4J8W 3 C, G Histone H2A 8355
52 1P34 4 C, G Histone H2A 8355
53 3X1V 4 C, G Histone H2A type 1-B/E 9606
54 4Z66 3 C, G Histone H2A 8355
55 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
56 3WTP 3 C, G Histone H2A type 1-B/E 9606
57 3X1T 4 C, G Histone H2A 10090
58 2NZD 5 C, G histone H2A 8355
59 3A6N 3 C, G Histone H2A type 1-B/E 9606
60 3LJA 3 C, G Histone H2A 8355
61 3AZI 3 C, G Histone H2A type 1-B/E 9606
62 3TU4 3 C, G Histone H2A 8355
63 1P3O 4 C, G Histone H2A 8355
64 1KX4 4 C, G histone H2A.1 8355
65 3AZN 3 C, G Histone H2A type 1-B/E 9606
66 1P3M 4 C, G Histone H2A 8355
67 4J8V 3 C, G Histone H2A 8355
68 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
69 3X1S 3 C, G Histone H2A type 1-B/E 9606
70 3LZ0 3 C, G Histone H2A residues 2-120 8355
71 1P3F 4 C, G Histone H2A 8355
72 1P3K 4 C, G Histone H2A 8355
73 1P3A 4 C, G Histone H2A 8355
74 3LZ1 3 C, G Histone H2A residues 2-120 8355
75 4Z5T 3 C, G Histone H2A type 1-B/E 9606
76 3AV2 3 C, G Histone H2A type 1-B/E 9606
77 3AYW 3 C, G Histone H2A type 1-B/E 9606
78 3AZJ 3 C, G Histone H2A type 1-B/E 9606
79 3REK 3 C, G Histone H2A type1 8355
80 4KGC 3 C, G Histone H2A 8355
81 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
82 3REL 3 C, G Histone H2A 8355
83 3REI 3 C, G Histone H2A type1 8355
84 1P3B 4 C, G Histone H2A 8355
85 3WKJ 3 C, G Histone H2A type 1-B/E 9606
86 4KUD 3 C, G Histone H2A.2 4932
87 3AZK 3 C, G Histone H2A type 1-B/E 9606
88 4J8X 3 C, G Histone H2A 8355
89 3LEL 3 C, G, M, Q Histone H2A 8355
90 4YS3 3 C, G Histone H2A residues 15-121 8355
91 3KUY 3 C, G Histone H2A 8355
92 4R8P 3 C, G Histone H2A 8355
93 3AZM 3 C, G Histone H2A type 1-B/E 9606
94 3X1U 4 C, G Histone H2A 10090
95 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
96 1ID3 4 C, G HISTONE H2A.1 4932
97 3C1C 3 C, G Histone H2A type 1 8355
98 3AZH 3 C, G Histone H2A type 1-B/E 9606
99 5CPI 3 C, G Histone H2A type 1-B/E 9606
100 4JJN 3 C, G Histone H2A.2 4932
101 3W99 3 C, G Histone H2A type 1-B/E 9606
102 3AZE 3 C, G Histone H2A type 1-B/E 9606
103 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
104 5CPJ 3 C, G Histone H2A type 1-B/E 9606
105 5B24 3 C, G Histone H2A type 1-B/E 9606
106 2HIO 1 A PROTEIN (HISTONE H2A) 9031
107 1HIO 1 A HISTONE H2A 9031
108 4QLC 5 C, G Histone H2A 7227
109 4LD9 3 C, G Histone H2A 8355
110 3O62 3 C, G Histone H2A type 1 8355
111 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
112 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
113 3W97 3 C, G Histone H2A type 1-B/E 9606
114 4YM5 3 C, G Histone H2A type 1-B/E 9606
115 4YM6 3 C, G Histone H2A type 1-B/E 9606
116 2FJ7 5 C, G histone H2A 8355
117 3W98 3 C, G Histone H2A type 1-B/E 9606
118 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
119 3AN2 3 C, G Histone H2A type 1-B/E 9606
120 3B6F 5 C, G Histone H2A 8355
121 3B6G 5 C, G Histone H2A 8355
122 3KXB 3 C, G Histone H2A 8355
123 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
124 5HQ2 3 G Histone H2A 8355
125 1ZBB 5 C, G, c, g Histone H2A.1 8355
126 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
127 3C9K 1 A, E Histone H2A-IV 9031