Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 322
95 % 48 134 101
90 % 48 137 102
70 % 48 138 104
50 % 49 141 136
40 % 49 141 152
30 % 49 141 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 125 83
95 % 52 144 75
90 % 53 149 74
70 % 53 149 88
50 % 53 149 126
40 % 53 149 145
30 % 53 149 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 247
95 % 40 123 111
90 % 43 132 104
70 % 44 136 97
50 % 49 146 124
40 % 49 146 142
30 % 49 146 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 266
95 % 40 122 113
90 % 40 125 116
70 % 42 131 123
50 % 42 131 151
40 % 42 131 170
30 % 42 131 184
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WNN 1 A, C, E, G Histone H2A.1 4932
2 1TZY 1 A, E Histone H2A-IV 9031
3 1KX5 5 C, G histone H2A.1 8355
4 2ARO 1 A, E Histone H2A-IV 9031
5 5B0Z 3 C, G Histone H2A type 1-B/E 9606
6 1S32 4 C, G histone H2A 8355
7 5AV8 3 C, G Histone H2A type 1-B/E 9606
8 1KX3 4 C, G histone H2A.1 8355
9 5AV9 3 C, G Histone H2A type 1-B/E 9606
10 5AV6 3 C, G Histone H2A type 1-B/E 9606
11 1HQ3 1 A, E HISTONE H2A-IV 9031
12 3UTA 3 C, G Histone H2A 8355
13 4KHA 2 B Histone H2A UNP residues 15-103 8355
14 5B31 3 C Histone H2A type 1-B/E 9606
15 3UTB 3 C, G Histone H2A 8355
16 1M19 4 C, G Histone H2A.1 8355
17 5AVB 3 C, G Histone H2A type 1-B/E 9606
18 5AVC 3 C, G Histone H2A type 1-B/E 9606
19 5AV5 3 C, G Histone H2A type 1-B/E 9606
20 3C1B 3 C, G Histone H2A type 1 8355
21 2NQB 4 C, G Histone H2A 7227
22 5F99 3 C, G Histone H2A type 1 8355
23 3UT9 3 C, G Histone H2A 8355
24 5B32 3 C Histone H2A type 1-B/E 9606
25 4WU8 5 C, G Histone H2A type 1 8355
26 1P3I 4 C, G Histone H2A 8355
27 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
28 3AZG 3 C, G Histone H2A type 1-B/E 9606
29 1M18 4 C, G Histone H2A.1 8355
30 5B2J 3 C, G Histone H2A type 1-B/E 9606
31 2PYO 5 C, G Histone H2A 7227
32 1P3L 4 C, G Histone H2A 8355
33 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
34 5B0Y 3 C, G Histone H2A type 1-B/E 9606
35 2CV5 4 C, G Histone H2A.a 9606
36 5CP6 5 C, G Histone H2A 8355
37 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
38 3MVD 3 C, G Histone H2A 8355
39 4J8U 3 C, G Histone H2A type 1 8355
40 4WU9 3 C, G Histone H2A type 1 8355
41 3REH 3 C, G Histone H2A type 1 8355
42 3AZL 3 C, G Histone H2A type 1-B/E 9606
43 4XZQ 3 C, G Histone H2A residues 15-121 8355
44 3AFA 3 C, G Histone H2A type 1-B/E 9606
45 5E5A 4 C, G Histone H2A 8355
46 3REJ 3 C, G Histone H2A type 1 8355
47 3AZF 3 C, G Histone H2A type 1-B/E 9606
48 1P3P 4 C, G Histone H2A 8355
49 3AV1 3 C, G Histone H2A type 1-B/E 9606
50 1M1A 4 C, G Histone H2A.1 8355
51 5CPK 3 C, G Histone H2A type 1-B/E 9606
52 5AY8 3 C, G Histone H2A type 1-B/E 9606
53 3MNN 3 C, G Histone H2A 8355
54 1P3G 4 C, G Histone H2A 8355
55 4J8W 3 C, G Histone H2A 8355
56 1P34 4 C, G Histone H2A 8355
57 3X1V 4 C, G Histone H2A type 1-B/E 9606
58 4Z66 3 C, G Histone H2A 8355
59 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
60 3WTP 3 C, G Histone H2A type 1-B/E 9606
61 3X1T 4 C, G Histone H2A 10090
62 2NZD 5 C, G histone H2A 8355
63 3A6N 3 C, G Histone H2A type 1-B/E 9606
64 3LJA 3 C, G Histone H2A 8355
65 3AZI 3 C, G Histone H2A type 1-B/E 9606
66 3TU4 3 C, G Histone H2A 8355
67 1P3O 4 C, G Histone H2A 8355
68 1KX4 4 C, G histone H2A.1 8355
69 3AZN 3 C, G Histone H2A type 1-B/E 9606
70 1P3M 4 C, G Histone H2A 8355
71 4J8V 3 C, G Histone H2A 8355
72 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
73 3X1S 3 C, G Histone H2A type 1-B/E 9606
74 3LZ0 3 C, G Histone H2A residues 2-120 8355
75 1P3F 4 C, G Histone H2A 8355
76 1P3K 4 C, G Histone H2A 8355
77 5B2I 3 C, G Histone H2A type 1-B/E 9606
78 1P3A 4 C, G Histone H2A 8355
79 3LZ1 3 C, G Histone H2A residues 2-120 8355
80 4Z5T 3 C, G Histone H2A type 1-B/E 9606
81 3AV2 3 C, G Histone H2A type 1-B/E 9606
82 3AYW 3 C, G Histone H2A type 1-B/E 9606
83 3AZJ 3 C, G Histone H2A type 1-B/E 9606
84 3REK 3 C, G Histone H2A type1 8355
85 4KGC 3 C, G Histone H2A 8355
86 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
87 3REL 3 C, G Histone H2A 8355
88 3REI 3 C, G Histone H2A type1 8355
89 1P3B 4 C, G Histone H2A 8355
90 3WKJ 3 C, G Histone H2A type 1-B/E 9606
91 4KUD 3 C, G Histone H2A.2 4932
92 3AZK 3 C, G Histone H2A type 1-B/E 9606
93 4J8X 3 C, G Histone H2A 8355
94 3LEL 3 C, G, M, Q Histone H2A 8355
95 4YS3 3 C, G Histone H2A residues 15-121 8355
96 3KUY 3 C, G Histone H2A 8355
97 4R8P 3 C, G Histone H2A 8355
98 3AZM 3 C, G Histone H2A type 1-B/E 9606
99 3X1U 4 C, G Histone H2A 10090
100 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
101 1ID3 4 C, G HISTONE H2A.1 4932
102 3C1C 3 C, G Histone H2A type 1 8355
103 3AZH 3 C, G Histone H2A type 1-B/E 9606
104 5B40 3 C, G Histone H2A type 1-B/E 9606
105 5CPI 3 C, G Histone H2A type 1-B/E 9606
106 4JJN 3 C, G Histone H2A.2 4932
107 3W99 3 C, G Histone H2A type 1-B/E 9606
108 3AZE 3 C, G Histone H2A type 1-B/E 9606
109 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
110 5CPJ 3 C, G Histone H2A type 1-B/E 9606
111 5B24 3 C, G Histone H2A type 1-B/E 9606
112 2HIO 1 A PROTEIN (HISTONE H2A) 9031
113 1HIO 1 A HISTONE H2A 9031
114 4QLC 5 C, G Histone H2A 7227
115 4LD9 3 C, G Histone H2A 8355
116 3O62 3 C, G Histone H2A type 1 8355
117 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
118 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
119 3W97 3 C, G Histone H2A type 1-B/E 9606
120 4YM5 3 C, G Histone H2A type 1-B/E 9606
121 4YM6 3 C, G Histone H2A type 1-B/E 9606
122 2FJ7 5 C, G histone H2A 8355
123 3W98 3 C, G Histone H2A type 1-B/E 9606
124 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
125 3AN2 3 C, G Histone H2A type 1-B/E 9606
126 3B6F 5 C, G Histone H2A 8355
127 3B6G 5 C, G Histone H2A 8355
128 3KXB 3 C, G Histone H2A 8355
129 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
130 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
131 5HQ2 3 G Histone H2A 8355
132 1ZBB 5 C, G, c, g Histone H2A.1 8355
133 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
134 2RVQ 1 C Histone H2A type 1-B/E 9606
135 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
136 3C9K 1 A, E Histone H2A-IV 9031