Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 323
95 % 51 143 90
90 % 51 146 83
70 % 51 147 101
50 % 52 150 136
40 % 52 150 152
30 % 52 150 169
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 134 78
95 % 55 153 72
90 % 56 158 73
70 % 56 158 88
50 % 56 158 127
40 % 56 158 142
30 % 56 158 158
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 50 254
95 % 43 129 112
90 % 46 140 84
70 % 48 146 93
50 % 53 156 121
40 % 53 156 139
30 % 53 156 155
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 294
95 % 43 128 114
90 % 43 133 113
70 % 46 140 119
50 % 46 140 147
40 % 46 140 162
30 % 46 140 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WNN 1 A, C, E, G Histone H2A.1 4932
2 1TZY 1 A, E Histone H2A-IV 9031
3 1KX5 5 C, G histone H2A.1 8355
4 2ARO 1 A, E Histone H2A-IV 9031
5 5B0Z 3 C, G Histone H2A type 1-B/E 9606
6 1S32 4 C, G histone H2A 8355
7 5AV8 3 C, G Histone H2A type 1-B/E 9606
8 1KX3 4 C, G histone H2A.1 8355
9 5AV9 3 C, G Histone H2A type 1-B/E 9606
10 5AV6 3 C, G Histone H2A type 1-B/E 9606
11 1HQ3 1 A, E HISTONE H2A-IV 9031
12 3UTA 3 C, G Histone H2A 8355
13 4KHA 2 B Histone H2A UNP residues 15-103 8355
14 5B31 3 C Histone H2A type 1-B/E 9606
15 5B1L 3 C, G Histone H2A type 1 10090
16 3UTB 3 C, G Histone H2A 8355
17 1M19 4 C, G Histone H2A.1 8355
18 5AVB 3 C, G Histone H2A type 1-B/E 9606
19 5AVC 3 C, G Histone H2A type 1-B/E 9606
20 5AV5 3 C, G Histone H2A type 1-B/E 9606
21 3C1B 3 C, G Histone H2A type 1 8355
22 5B1M 3 C, G Histone H2A type 1 10090
23 2NQB 4 C, G Histone H2A 7227
24 5F99 3 C, G Histone H2A type 1 8355
25 5JRG 3 C, G Histone H2A type 1-B/E 9606
26 3UT9 3 C, G Histone H2A 8355
27 5B32 3 C Histone H2A type 1-B/E 9606
28 4WU8 5 C, G Histone H2A type 1 8355
29 1P3I 4 C, G Histone H2A 8355
30 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
31 3AZG 3 C, G Histone H2A type 1-B/E 9606
32 1M18 4 C, G Histone H2A.1 8355
33 5B2J 3 C, G Histone H2A type 1-B/E 9606
34 2PYO 5 C, G Histone H2A 7227
35 1P3L 4 C, G Histone H2A 8355
36 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 3 C, G Histone H2A type 1-B/E 9606
38 2CV5 4 C, G Histone H2A.a 9606
39 5CP6 5 C, G Histone H2A 8355
40 5BT1 2 C Histone H2A.1 4932
41 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
42 3MVD 3 C, G Histone H2A 8355
43 4J8U 3 C, G Histone H2A type 1 8355
44 4WU9 3 C, G Histone H2A type 1 8355
45 3REH 3 C, G Histone H2A type 1 8355
46 3AZL 3 C, G Histone H2A type 1-B/E 9606
47 4XZQ 3 C, G Histone H2A residues 15-121 8355
48 3AFA 3 C, G Histone H2A type 1-B/E 9606
49 5E5A 4 C, G Histone H2A 8355
50 3REJ 3 C, G Histone H2A type 1 8355
51 3AZF 3 C, G Histone H2A type 1-B/E 9606
52 1P3P 4 C, G Histone H2A 8355
53 3AV1 3 C, G Histone H2A type 1-B/E 9606
54 1M1A 4 C, G Histone H2A.1 8355
55 5CPK 3 C, G Histone H2A type 1-B/E 9606
56 5AY8 3 C, G Histone H2A type 1-B/E 9606
57 3MNN 3 C, G Histone H2A 8355
58 1P3G 4 C, G Histone H2A 8355
59 4J8W 3 C, G Histone H2A 8355
60 1P34 4 C, G Histone H2A 8355
61 3X1V 4 C, G Histone H2A type 1-B/E 9606
62 5DNM 3 C, G Histone H2A 8355
63 4Z66 3 C, G Histone H2A 8355
64 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
65 3WTP 3 C, G Histone H2A type 1-B/E 9606
66 3X1T 4 C, G Histone H2A 10090
67 2NZD 5 C, G histone H2A 8355
68 3A6N 3 C, G Histone H2A type 1-B/E 9606
69 5DNN 3 C, G Histone H2A 8355
70 5GT3 3 C, G Histone H2A type 1-D 9606
71 5GT0 3 C, G Histone H2A type 1-A 9606
72 3LJA 3 C, G Histone H2A 8355
73 3AZI 3 C, G Histone H2A type 1-B/E 9606
74 3TU4 3 C, G Histone H2A 8355
75 1P3O 4 C, G Histone H2A 8355
76 1KX4 4 C, G histone H2A.1 8355
77 3AZN 3 C, G Histone H2A type 1-B/E 9606
78 1P3M 4 C, G Histone H2A 8355
79 4J8V 3 C, G Histone H2A 8355
80 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
81 3X1S 3 C, G Histone H2A type 1-B/E 9606
82 3LZ0 3 C, G Histone H2A residues 2-120 8355
83 1P3F 4 C, G Histone H2A 8355
84 1P3K 4 C, G Histone H2A 8355
85 5B2I 3 C, G Histone H2A type 1-B/E 9606
86 1P3A 4 C, G Histone H2A 8355
87 3LZ1 3 C, G Histone H2A residues 2-120 8355
88 2F8N 7 K Histone H2A type 1 10090
89 4Z5T 3 C, G Histone H2A type 1-B/E 9606
90 3AV2 3 C, G Histone H2A type 1-B/E 9606
91 3AYW 3 C, G Histone H2A type 1-B/E 9606
92 3AZJ 3 C, G Histone H2A type 1-B/E 9606
93 3REK 3 C, G Histone H2A type1 8355
94 4KGC 3 C, G Histone H2A 8355
95 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
96 5GSU 3 C, G Histone H2A type 1-A 9606
97 3REL 3 C, G Histone H2A 8355
98 3REI 3 C, G Histone H2A type1 8355
99 1P3B 4 C, G Histone H2A 8355
100 3WKJ 3 C, G Histone H2A type 1-B/E 9606
101 4KUD 3 C, G Histone H2A.2 4932
102 3AZK 3 C, G Histone H2A type 1-B/E 9606
103 4J8X 3 C, G Histone H2A 8355
104 3LEL 3 C, G, M, Q Histone H2A 8355
105 4YS3 3 C, G Histone H2A residues 15-121 8355
106 3KUY 3 C, G Histone H2A 8355
107 4R8P 3 C, G Histone H2A 8355
108 3AZM 3 C, G Histone H2A type 1-B/E 9606
109 3X1U 4 C, G Histone H2A 10090
110 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
111 1ID3 4 C, G HISTONE H2A.1 4932
112 3C1C 3 C, G Histone H2A type 1 8355
113 3AZH 3 C, G Histone H2A type 1-B/E 9606
114 5B40 3 C, G Histone H2A type 1-B/E 9606
115 5CPI 3 C, G Histone H2A type 1-B/E 9606
116 4JJN 3 C, G Histone H2A.2 4932
117 3W99 3 C, G Histone H2A type 1-B/E 9606
118 3AZE 3 C, G Histone H2A type 1-B/E 9606
119 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
120 5CPJ 3 C, G Histone H2A type 1-B/E 9606
121 5B24 3 C, G Histone H2A type 1-B/E 9606
122 2HIO 1 A PROTEIN (HISTONE H2A) 9031
123 1HIO 1 A HISTONE H2A 9031
124 4QLC 5 C, G Histone H2A 7227
125 4LD9 3 C, G Histone H2A 8355
126 3O62 3 C, G Histone H2A type 1 8355
127 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
128 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
129 3W97 3 C, G Histone H2A type 1-B/E 9606
130 4YM5 3 C, G Histone H2A type 1-B/E 9606
131 4YM6 3 C, G Histone H2A type 1-B/E 9606
132 2FJ7 5 C, G histone H2A 8355
133 3W98 3 C, G Histone H2A type 1-B/E 9606
134 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
135 3AN2 3 C, G Histone H2A type 1-B/E 9606
136 3B6F 5 C, G Histone H2A 8355
137 3B6G 5 C, G Histone H2A 8355
138 3KXB 3 C, G Histone H2A 8355
139 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
140 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
141 5HQ2 3 G Histone H2A 8355
142 1ZBB 5 C, G, c, g Histone H2A.1 8355
143 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
144 2RVQ 1 C Histone H2A type 1-B/E 9606
145 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
146 3C9K 1 A, E Histone H2A-IV 9031