Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 103
90 % 44 129 103
70 % 44 130 116
50 % 45 133 142
40 % 45 133 156
30 % 45 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 85
95 % 47 135 78
90 % 48 140 78
70 % 48 140 92
50 % 48 140 130
40 % 48 140 144
30 % 48 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 112
90 % 39 123 106
70 % 40 127 106
50 % 43 134 129
40 % 43 134 143
30 % 43 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 116
90 % 36 116 117
70 % 38 122 128
50 % 38 122 155
40 % 38 122 169
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4CAY 1 A HISTONE H2A.Z GLOBULAR DOMAIN, RESIDUES 19-128 9606
2 4WNN 1 A, C, E, G Histone H2A.1 4932
3 1TZY 1 A, E Histone H2A-IV 9031
4 1KX5 5 C, G histone H2A.1 8355
5 2ARO 1 A, E Histone H2A-IV 9031
6 5B0Z 3 C, G Histone H2A type 1-B/E 9606
7 1S32 4 C, G histone H2A 8355
8 5AV8 3 C, G Histone H2A type 1-B/E 9606
9 1KX3 4 C, G histone H2A.1 8355
10 5AV9 3 C, G Histone H2A type 1-B/E 9606
11 5AV6 3 C, G Histone H2A type 1-B/E 9606
12 1HQ3 1 A, E HISTONE H2A-IV 9031
13 3UTA 3 C, G Histone H2A 8355
14 4KHA 2 B Histone H2A UNP residues 15-103 8355
15 3UTB 3 C, G Histone H2A 8355
16 1M19 4 C, G Histone H2A.1 8355
17 5AVB 3 C, G Histone H2A type 1-B/E 9606
18 5AVC 3 C, G Histone H2A type 1-B/E 9606
19 5AV5 3 C, G Histone H2A type 1-B/E 9606
20 3C1B 3 C, G Histone H2A type 1 8355
21 2NQB 4 C, G Histone H2A 7227
22 5F99 3 C, G Histone H2A type 1 8355
23 3UT9 3 C, G Histone H2A 8355
24 4WU8 5 C, G Histone H2A type 1 8355
25 1P3I 4 C, G Histone H2A 8355
26 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
27 1F66 4 C, G HISTONE H2A.Z 9606
28 3AZG 3 C, G Histone H2A type 1-B/E 9606
29 5FUG 1 A, D, G, J HISTONE H2A.Z GLOBULAR DOMAIN 9606
30 1M18 4 C, G Histone H2A.1 8355
31 2PYO 5 C, G Histone H2A 7227
32 1P3L 4 C, G Histone H2A 8355
33 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
34 5B0Y 3 C, G Histone H2A type 1-B/E 9606
35 2CV5 4 C, G Histone H2A.a 9606
36 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
37 3MVD 3 C, G Histone H2A 8355
38 4J8U 3 C, G Histone H2A type 1 8355
39 4WU9 3 C, G Histone H2A type 1 8355
40 3REH 3 C, G Histone H2A type 1 8355
41 3AZL 3 C, G Histone H2A type 1-B/E 9606
42 4XZQ 3 C, G Histone H2A residues 15-121 8355
43 3AFA 3 C, G Histone H2A type 1-B/E 9606
44 5E5A 4 C, G Histone H2A 8355
45 3REJ 3 C, G Histone H2A type 1 8355
46 3AZF 3 C, G Histone H2A type 1-B/E 9606
47 1P3P 4 C, G Histone H2A 8355
48 3AV1 3 C, G Histone H2A type 1-B/E 9606
49 1M1A 4 C, G Histone H2A.1 8355
50 5CPK 3 C, G Histone H2A type 1-B/E 9606
51 5AY8 3 C, G Histone H2A type 1-B/E 9606
52 3MNN 3 C, G Histone H2A 8355
53 1P3G 4 C, G Histone H2A 8355
54 4J8W 3 C, G Histone H2A 8355
55 1P34 4 C, G Histone H2A 8355
56 3X1V 4 C, G Histone H2A type 1-B/E 9606
57 4Z66 3 C, G Histone H2A 8355
58 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
59 3WTP 3 C, G Histone H2A type 1-B/E 9606
60 3X1T 4 C, G Histone H2A 10090
61 2NZD 5 C, G histone H2A 8355
62 3A6N 3 C, G Histone H2A type 1-B/E 9606
63 3LJA 3 C, G Histone H2A 8355
64 3AZI 3 C, G Histone H2A type 1-B/E 9606
65 3TU4 3 C, G Histone H2A 8355
66 1P3O 4 C, G Histone H2A 8355
67 1KX4 4 C, G histone H2A.1 8355
68 3AZN 3 C, G Histone H2A type 1-B/E 9606
69 1P3M 4 C, G Histone H2A 8355
70 4J8V 3 C, G Histone H2A 8355
71 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
72 3X1S 3 C, G Histone H2A type 1-B/E 9606
73 3LZ0 3 C, G Histone H2A residues 2-120 8355
74 1P3F 4 C, G Histone H2A 8355
75 1P3K 4 C, G Histone H2A 8355
76 1P3A 4 C, G Histone H2A 8355
77 3LZ1 3 C, G Histone H2A residues 2-120 8355
78 2F8N 6 G Core histone macro-H2A.1 residues 0-119 9606
79 4Z5T 3 C, G Histone H2A type 1-B/E 9606
80 1U35 4 C, G H2A histone family 9606
81 3AV2 3 C, G Histone H2A type 1-B/E 9606
82 3AYW 3 C, G Histone H2A type 1-B/E 9606
83 3AZJ 3 C, G Histone H2A type 1-B/E 9606
84 3REK 3 C, G Histone H2A type1 8355
85 4KGC 3 C, G Histone H2A 8355
86 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
87 3REL 3 C, G Histone H2A 8355
88 3REI 3 C, G Histone H2A type1 8355
89 1P3B 4 C, G Histone H2A 8355
90 3WKJ 3 C, G Histone H2A type 1-B/E 9606
91 4KUD 3 C, G Histone H2A.2 4932
92 3AZK 3 C, G Histone H2A type 1-B/E 9606
93 4J8X 3 C, G Histone H2A 8355
94 3LEL 3 C, G, M, Q Histone H2A 8355
95 4YS3 3 C, G Histone H2A residues 15-121 8355
96 3KUY 3 C, G Histone H2A 8355
97 4R8P 3 C, G Histone H2A 8355
98 3AZM 3 C, G Histone H2A type 1-B/E 9606
99 3X1U 4 C, G Histone H2A 10090
100 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
101 3WA9 3 C, G Histone H2A.Z 9606
102 1ID3 4 C, G HISTONE H2A.1 4932
103 3C1C 3 C, G Histone H2A type 1 8355
104 3AZH 3 C, G Histone H2A type 1-B/E 9606
105 3WAA 3 C, G Histone H2A.V 9606
106 5CPI 3 C, G Histone H2A type 1-B/E 9606
107 4JJN 3 C, G Histone H2A.2 4932
108 3W99 3 C, G Histone H2A type 1-B/E 9606
109 3AZE 3 C, G Histone H2A type 1-B/E 9606
110 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
111 5CPJ 3 C, G Histone H2A type 1-B/E 9606
112 5B24 3 C, G Histone H2A type 1-B/E 9606
113 2HIO 1 A PROTEIN (HISTONE H2A) 9031
114 1HIO 1 A HISTONE H2A 9031
115 4QLC 5 C, G Histone H2A 7227
116 4LD9 3 C, G Histone H2A 8355
117 3O62 3 C, G Histone H2A type 1 8355
118 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
119 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
120 3W97 3 C, G Histone H2A type 1-B/E 9606
121 4YM5 3 C, G Histone H2A type 1-B/E 9606
122 4YM6 3 C, G Histone H2A type 1-B/E 9606
123 2FJ7 5 C, G histone H2A 8355
124 3W98 3 C, G Histone H2A type 1-B/E 9606
125 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
126 3AN2 3 C, G Histone H2A type 1-B/E 9606
127 3B6F 5 C, G Histone H2A 8355
128 3B6G 5 C, G Histone H2A 8355
129 3KXB 3 C, G Histone H2A 8355
130 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
131 5HQ2 3 G Histone H2A 8355
132 1ZBB 5 C, G, c, g Histone H2A.1 8355
133 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
134 3C9K 1 A, E Histone H2A-IV 9031