Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 346
95 % 48 137 105
90 % 48 140 105
70 % 48 141 116
50 % 49 144 139
40 % 49 144 156
30 % 49 144 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 128 85
95 % 52 147 76
90 % 53 152 74
70 % 53 152 88
50 % 53 152 127
40 % 53 152 145
30 % 53 152 159
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 252
95 % 40 125 111
90 % 43 134 107
70 % 45 140 97
50 % 50 150 123
40 % 50 150 140
30 % 50 150 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 273
95 % 40 124 115
90 % 40 127 116
70 % 43 134 123
50 % 43 134 151
40 % 43 134 166
30 % 43 134 183
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4CAY 1 A HISTONE H2A.Z GLOBULAR DOMAIN, RESIDUES 19-128 9606
2 4WNN 1 A, C, E, G Histone H2A.1 4932
3 1TZY 1 A, E Histone H2A-IV 9031
4 1KX5 5 C, G histone H2A.1 8355
5 2ARO 1 A, E Histone H2A-IV 9031
6 5B0Z 3 C, G Histone H2A type 1-B/E 9606
7 1S32 4 C, G histone H2A 8355
8 5AV8 3 C, G Histone H2A type 1-B/E 9606
9 1KX3 4 C, G histone H2A.1 8355
10 5AV9 3 C, G Histone H2A type 1-B/E 9606
11 5AV6 3 C, G Histone H2A type 1-B/E 9606
12 1HQ3 1 A, E HISTONE H2A-IV 9031
13 3UTA 3 C, G Histone H2A 8355
14 4KHA 2 B Histone H2A UNP residues 15-103 8355
15 5B31 3 C Histone H2A type 1-B/E 9606
16 5B31 5 G Histone H2A.Z 9606
17 3UTB 3 C, G Histone H2A 8355
18 1M19 4 C, G Histone H2A.1 8355
19 5AVB 3 C, G Histone H2A type 1-B/E 9606
20 5AVC 3 C, G Histone H2A type 1-B/E 9606
21 5AV5 3 C, G Histone H2A type 1-B/E 9606
22 3C1B 3 C, G Histone H2A type 1 8355
23 2NQB 4 C, G Histone H2A 7227
24 5F99 3 C, G Histone H2A type 1 8355
25 3UT9 3 C, G Histone H2A 8355
26 5B32 3 C Histone H2A type 1-B/E 9606
27 5B32 5 G Histone H2A.Z 9606
28 4WU8 5 C, G Histone H2A type 1 8355
29 1P3I 4 C, G Histone H2A 8355
30 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
31 1F66 4 C, G HISTONE H2A.Z 9606
32 3AZG 3 C, G Histone H2A type 1-B/E 9606
33 5FUG 1 A, D, G, J HISTONE H2A.Z GLOBULAR DOMAIN 9606
34 1M18 4 C, G Histone H2A.1 8355
35 5B2J 3 C, G Histone H2A type 1-B/E 9606
36 2PYO 5 C, G Histone H2A 7227
37 1P3L 4 C, G Histone H2A 8355
38 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
39 5B0Y 3 C, G Histone H2A type 1-B/E 9606
40 2CV5 4 C, G Histone H2A.a 9606
41 5CP6 5 C, G Histone H2A 8355
42 5BT1 2 C Histone H2A.1 4932
43 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
44 3MVD 3 C, G Histone H2A 8355
45 4J8U 3 C, G Histone H2A type 1 8355
46 4WU9 3 C, G Histone H2A type 1 8355
47 3REH 3 C, G Histone H2A type 1 8355
48 3AZL 3 C, G Histone H2A type 1-B/E 9606
49 4XZQ 3 C, G Histone H2A residues 15-121 8355
50 3AFA 3 C, G Histone H2A type 1-B/E 9606
51 5E5A 4 C, G Histone H2A 8355
52 3REJ 3 C, G Histone H2A type 1 8355
53 3AZF 3 C, G Histone H2A type 1-B/E 9606
54 1P3P 4 C, G Histone H2A 8355
55 3AV1 3 C, G Histone H2A type 1-B/E 9606
56 1M1A 4 C, G Histone H2A.1 8355
57 5CPK 3 C, G Histone H2A type 1-B/E 9606
58 5AY8 3 C, G Histone H2A type 1-B/E 9606
59 3MNN 3 C, G Histone H2A 8355
60 1P3G 4 C, G Histone H2A 8355
61 4J8W 3 C, G Histone H2A 8355
62 1P34 4 C, G Histone H2A 8355
63 3X1V 4 C, G Histone H2A type 1-B/E 9606
64 5DNM 3 C, G Histone H2A 8355
65 4Z66 3 C, G Histone H2A 8355
66 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
67 3WTP 3 C, G Histone H2A type 1-B/E 9606
68 3X1T 4 C, G Histone H2A 10090
69 2NZD 5 C, G histone H2A 8355
70 3A6N 3 C, G Histone H2A type 1-B/E 9606
71 5DNN 3 C, G Histone H2A 8355
72 3LJA 3 C, G Histone H2A 8355
73 3AZI 3 C, G Histone H2A type 1-B/E 9606
74 3TU4 3 C, G Histone H2A 8355
75 1P3O 4 C, G Histone H2A 8355
76 1KX4 4 C, G histone H2A.1 8355
77 3AZN 3 C, G Histone H2A type 1-B/E 9606
78 1P3M 4 C, G Histone H2A 8355
79 4J8V 3 C, G Histone H2A 8355
80 5B33 3 C, G Histone H2A.Z 9606
81 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
82 3X1S 3 C, G Histone H2A type 1-B/E 9606
83 3LZ0 3 C, G Histone H2A residues 2-120 8355
84 1P3F 4 C, G Histone H2A 8355
85 1P3K 4 C, G Histone H2A 8355
86 5B2I 3 C, G Histone H2A type 1-B/E 9606
87 1P3A 4 C, G Histone H2A 8355
88 3LZ1 3 C, G Histone H2A residues 2-120 8355
89 2F8N 6 G Core histone macro-H2A.1 residues 0-119 9606
90 2F8N 7 K Histone H2A type 1 10090
91 4Z5T 3 C, G Histone H2A type 1-B/E 9606
92 1U35 4 C, G H2A histone family 9606
93 3AV2 3 C, G Histone H2A type 1-B/E 9606
94 3AYW 3 C, G Histone H2A type 1-B/E 9606
95 3AZJ 3 C, G Histone H2A type 1-B/E 9606
96 3REK 3 C, G Histone H2A type1 8355
97 4KGC 3 C, G Histone H2A 8355
98 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
99 3REL 3 C, G Histone H2A 8355
100 3REI 3 C, G Histone H2A type1 8355
101 1P3B 4 C, G Histone H2A 8355
102 3WKJ 3 C, G Histone H2A type 1-B/E 9606
103 4KUD 3 C, G Histone H2A.2 4932
104 3AZK 3 C, G Histone H2A type 1-B/E 9606
105 4J8X 3 C, G Histone H2A 8355
106 3LEL 3 C, G, M, Q Histone H2A 8355
107 4YS3 3 C, G Histone H2A residues 15-121 8355
108 3KUY 3 C, G Histone H2A 8355
109 4R8P 3 C, G Histone H2A 8355
110 3AZM 3 C, G Histone H2A type 1-B/E 9606
111 3X1U 4 C, G Histone H2A 10090
112 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
113 3WA9 3 C, G Histone H2A.Z 9606
114 1ID3 4 C, G HISTONE H2A.1 4932
115 3C1C 3 C, G Histone H2A type 1 8355
116 3AZH 3 C, G Histone H2A type 1-B/E 9606
117 5B40 3 C, G Histone H2A type 1-B/E 9606
118 3WAA 3 C, G Histone H2A.V 9606
119 5CPI 3 C, G Histone H2A type 1-B/E 9606
120 4JJN 3 C, G Histone H2A.2 4932
121 3W99 3 C, G Histone H2A type 1-B/E 9606
122 3AZE 3 C, G Histone H2A type 1-B/E 9606
123 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
124 5CPJ 3 C, G Histone H2A type 1-B/E 9606
125 5B24 3 C, G Histone H2A type 1-B/E 9606
126 2HIO 1 A PROTEIN (HISTONE H2A) 9031
127 1HIO 1 A HISTONE H2A 9031
128 4QLC 5 C, G Histone H2A 7227
129 4LD9 3 C, G Histone H2A 8355
130 3O62 3 C, G Histone H2A type 1 8355
131 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
132 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
133 3W97 3 C, G Histone H2A type 1-B/E 9606
134 4YM5 3 C, G Histone H2A type 1-B/E 9606
135 4YM6 3 C, G Histone H2A type 1-B/E 9606
136 2FJ7 5 C, G histone H2A 8355
137 3W98 3 C, G Histone H2A type 1-B/E 9606
138 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
139 3AN2 3 C, G Histone H2A type 1-B/E 9606
140 3B6F 5 C, G Histone H2A 8355
141 3B6G 5 C, G Histone H2A 8355
142 3KXB 3 C, G Histone H2A 8355
143 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
144 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
145 5HQ2 3 G Histone H2A 8355
146 1ZBB 5 C, G, c, g Histone H2A.1 8355
147 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
148 2RVQ 1 C Histone H2A type 1-B/E 9606
149 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
150 3C9K 1 A, E Histone H2A-IV 9031