Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 103
90 % 44 129 103
70 % 44 130 116
50 % 45 133 142
40 % 45 133 156
30 % 45 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 85
95 % 47 135 78
90 % 48 140 78
70 % 48 140 92
50 % 48 140 130
40 % 48 140 144
30 % 48 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 112
90 % 39 123 106
70 % 40 127 106
50 % 43 134 129
40 % 43 134 143
30 % 43 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 116
90 % 36 116 117
70 % 38 122 128
50 % 38 122 155
40 % 38 122 169
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 3UTB 2 B, F Histone H4 8355
19 1M19 3 B, F Histone H4 8355
20 5AVB 2 B, F Histone H4 9606
21 5AVC 2 B, F Histone H4 9606
22 5AV5 2 B, F Histone H4 9606
23 3C1B 2 B, F Histone H4 8355
24 2NQB 3 B, F Histone H4 7227
25 5F99 2 B, F Histone H4 8355
26 3UT9 2 B, F Histone H4 8355
27 3R45 2 B Histone H4 9606
28 4WU8 4 B, F Histone H4 8355
29 1P3I 3 B, F Histone H4 8355
30 3MGR 2 B, F Histone H4 8355
31 1F66 3 B, F HISTONE H4 10090
32 3AZG 2 B, F Histone H4 9606
33 1M18 3 B, F Histone H4 8355
34 2PYO 4 B, F Histone H4 7227
35 1P3L 3 B, F Histone H4 8355
36 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 2 B, F Histone H4 9606
38 2CV5 3 B, F Histone H4 9606
39 3MGP 2 B, F Histone H4 8355
40 3MVD 2 B, F Histone H4 8355
41 4J8U 2 B, F Histone H4 8355
42 4WU9 2 B, F Histone H4 8355
43 3REH 2 B, F Histone H4 8355
44 3AZL 2 B, F Histone H4 9606
45 3NQU 2 B Histone H4 9606
46 5BNV 2 B, E Histone H4 9606
47 3AFA 2 B, F Histone H4 9606
48 5E5A 3 B, F Histone H4 8355
49 3REJ 2 B, F Histone H4 8355
50 3AZF 2 B, F Histone H4 9606
51 1P3P 3 B, F Histone H4 8355
52 3AV1 2 B, F Histone H4 9606
53 1M1A 3 B, F Histone H4 8355
54 5CPK 2 B, F Histone H4 9606
55 5AY8 2 B, F Histone H4 9606
56 3MNN 2 B, F Histone H4 8355
57 5BO0 2 B Histone H4 9606
58 1P3G 3 B, F Histone H4 8355
59 4J8W 2 B, F Histone H4 8355
60 1P34 3 B, F Histone H4 8355
61 3X1V 3 B, F Histone H4 9606
62 4HGA 3 C Histone H4 9606
63 4UUZ 2 B HISTONE H4 7227
64 3MGQ 2 B, F Histone H4 8355
65 3WTP 2 B, F Histone H4 9606
66 3X1T 3 B, F Histone H4 9606
67 2NZD 4 B, F Histone H4 8355
68 3A6N 2 B, F Histone H4 9606
69 3LJA 2 B, F Histone H4 8355
70 3AZI 2 B, F Histone H4 9606
71 3TU4 2 B, F Histone H4 8355
72 1P3O 3 B, F Histone H4 8355
73 4Z2M 3 H, J Histone H4 9606
74 1KX4 3 B, F histone H4 8355
75 3AZN 2 B, F Histone H4 9606
76 1P3M 3 B, F Histone H4 8355
77 4J8V 2 B, F Histone H4 8355
78 3X1S 2 B, F Histone H4 9606
79 3LZ0 2 B, F Histone H4 8355
80 1P3F 3 B, F Histone H4 8355
81 1P3K 3 B, F Histone H4 8355
82 1P3A 3 B, F Histone H4 8355
83 3LZ1 2 B, F Histone H4 8355
84 2IO5 3 C Histone H4 8355
85 2F8N 3 B, F Histone H4 8355
86 4Z5T 2 B, F Histone H4 9606
87 1U35 3 B, F Hist1h4i protein 10090
88 3AV2 2 B, F Histone H4 9606
89 3AYW 2 B, F Histone H4 9606
90 3AZJ 2 B, F Histone H4 9606
91 3REK 2 B, F Histone H4 8355
92 4KGC 2 B, F Histone H4 8355
93 1ZLA 3 B, F Histone H4 8355
94 3REL 2 B, F Histone H4 8355
95 3REI 2 B, F Histone H4 8355
96 1P3B 3 B, F Histone H4 8355
97 3WKJ 2 B, F Histone H4 9606
98 3AZK 2 B, F Histone H4 9606
99 4J8X 2 B, F Histone H4 8355
100 3LEL 2 B, F, L, P Histone H4 8355
101 3KUY 2 B, F Histone H4 8355
102 4R8P 2 B, F Histone H4 8355
103 3AZM 2 B, F Histone H4 9606
104 3X1U 3 B, F Histone H4 9606
105 3MGS 2 B, F Histone H4 8355
106 3WA9 2 B, F Histone H4 9606
107 3C1C 2 B, F Histone H4 8355
108 3AZH 2 B, F Histone H4 9606
109 3WAA 2 B, F Histone H4 9606
110 5CPI 2 B, F Histone H4 9606
111 3AZE 2 B, F Histone H4 9606
112 3W96 2 B, F Histone H4 9606
113 5CPJ 2 B, F Histone H4 9606
114 5B24 2 B, F Histone H4 9606
115 5BS7 2 C, D Histone H4 8355
116 5C3I 3 C, G, K, O, S, W Histone H4 9606
117 2HIO 4 D PROTEIN (HISTONE H4) 9031
118 4QLC 4 B, F Histone H4 7227
119 4LD9 2 B, F Histone H4 8355
120 3O62 2 B, F Histone H4 8355
121 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
122 3W97 2 B, F Histone H4 9606
123 4YM5 2 B, F Histone H4 9606
124 4YM6 2 B, F Histone H4 9606
125 2FJ7 4 B, F Histone H4 8355
126 3W98 2 B, F Histone H4 9606
127 4ZUX 2 B, F, L, P Histone H4 8355
128 3AN2 2 B, F Histone H4 9606
129 5BSA 2 C, D Histone H4 8355
130 3B6F 4 B, F Histone H4 8355
131 3B6G 4 B, F Histone H4 8355
132 3KXB 2 B, F Histone H4 8355
133 5HQ2 2 B Histone H4 8355
134 1ZBB 4 B, F, b, f Histone H4 8355
135 3C9K 4 D, H Histone H4 9031