Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 39 330
95 % 50 142 98
90 % 50 145 83
70 % 50 146 101
50 % 51 149 133
40 % 51 149 151
30 % 51 149 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 133 81
95 % 54 152 71
90 % 55 157 73
70 % 55 157 86
50 % 55 157 124
40 % 55 157 141
30 % 55 157 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 49 253
95 % 42 128 110
90 % 45 139 87
70 % 47 145 94
50 % 52 155 120
40 % 52 155 139
30 % 52 155 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 303
95 % 42 127 114
90 % 42 132 113
70 % 45 139 120
50 % 45 139 145
40 % 45 139 161
30 % 45 139 179
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5B31 2 B, F Histone H4 9606
19 5B1L 2 B, F Histone H4 10090
20 3UTB 2 B, F Histone H4 8355
21 1M19 3 B, F Histone H4 8355
22 5AVB 2 B, F Histone H4 9606
23 5AVC 2 B, F Histone H4 9606
24 5AV5 2 B, F Histone H4 9606
25 3C1B 2 B, F Histone H4 8355
26 5B1M 2 B, F Histone H4 10090
27 2NQB 3 B, F Histone H4 7227
28 5JA4 2 B Histone H4 9606
29 5F99 2 B, F Histone H4 8355
30 3UT9 2 B, F Histone H4 8355
31 5B32 2 B, F Histone H4 9606
32 3R45 2 B Histone H4 9606
33 4WU8 4 B, F Histone H4 8355
34 1P3I 3 B, F Histone H4 8355
35 3MGR 2 B, F Histone H4 8355
36 1F66 3 B, F HISTONE H4 10090
37 3AZG 2 B, F Histone H4 9606
38 1M18 3 B, F Histone H4 8355
39 5B2J 2 B, F Histone H4 9606
40 2PYO 4 B, F Histone H4 7227
41 1P3L 3 B, F Histone H4 8355
42 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
43 5B0Y 2 B, F Histone H4 9606
44 2CV5 3 B, F Histone H4 9606
45 5CP6 4 B, F Histone H4 8355
46 3MGP 2 B, F Histone H4 8355
47 3MVD 2 B, F Histone H4 8355
48 4J8U 2 B, F Histone H4 8355
49 4WU9 2 B, F Histone H4 8355
50 3REH 2 B, F Histone H4 8355
51 3AZL 2 B, F Histone H4 9606
52 3NQU 2 B Histone H4 9606
53 5BNV 2 B, E Histone H4 9606
54 3AFA 2 B, F Histone H4 9606
55 5E5A 3 B, F Histone H4 8355
56 3REJ 2 B, F Histone H4 8355
57 3AZF 2 B, F Histone H4 9606
58 1P3P 3 B, F Histone H4 8355
59 3AV1 2 B, F Histone H4 9606
60 1M1A 3 B, F Histone H4 8355
61 5CPK 2 B, F Histone H4 9606
62 5AY8 2 B, F Histone H4 9606
63 3MNN 2 B, F Histone H4 8355
64 5BO0 2 B Histone H4 9606
65 1P3G 3 B, F Histone H4 8355
66 4J8W 2 B, F Histone H4 8355
67 1P34 3 B, F Histone H4 8355
68 3X1V 3 B, F Histone H4 9606
69 5DNM 2 B, F Histone H4 8355
70 4HGA 3 C Histone H4 9606
71 4UUZ 2 B HISTONE H4 7227
72 3MGQ 2 B, F Histone H4 8355
73 3WTP 2 B, F Histone H4 9606
74 3X1T 3 B, F Histone H4 9606
75 2NZD 4 B, F Histone H4 8355
76 3A6N 2 B, F Histone H4 9606
77 5DNN 2 B, F Histone H4 8355
78 5GT3 2 B, F Histone H4 9606
79 5GT0 2 B, F Histone H4 9606
80 3LJA 2 B, F Histone H4 8355
81 3AZI 2 B, F Histone H4 9606
82 3TU4 2 B, F Histone H4 8355
83 1P3O 3 B, F Histone H4 8355
84 4Z2M 3 H, J Histone H4 9606
85 1KX4 3 B, F histone H4 8355
86 3AZN 2 B, F Histone H4 9606
87 1P3M 3 B, F Histone H4 8355
88 4J8V 2 B, F Histone H4 8355
89 5B33 2 B, F Histone H4 9606
90 3X1S 2 B, F Histone H4 9606
91 3LZ0 2 B, F Histone H4 8355
92 1P3F 3 B, F Histone H4 8355
93 1P3K 3 B, F Histone H4 8355
94 5B2I 2 B, F Histone H4 9606
95 1P3A 3 B, F Histone H4 8355
96 3LZ1 2 B, F Histone H4 8355
97 2IO5 3 C Histone H4 8355
98 2F8N 3 B, F Histone H4 8355
99 4Z5T 2 B, F Histone H4 9606
100 1U35 3 B, F Hist1h4i protein 10090
101 3AV2 2 B, F Histone H4 9606
102 3AYW 2 B, F Histone H4 9606
103 3AZJ 2 B, F Histone H4 9606
104 3REK 2 B, F Histone H4 8355
105 4KGC 2 B, F Histone H4 8355
106 1ZLA 3 B, F Histone H4 8355
107 5GSU 2 B, F Histone H4 9606
108 3REL 2 B, F Histone H4 8355
109 3REI 2 B, F Histone H4 8355
110 1P3B 3 B, F Histone H4 8355
111 3WKJ 2 B, F Histone H4 9606
112 3AZK 2 B, F Histone H4 9606
113 4J8X 2 B, F Histone H4 8355
114 3LEL 2 B, F, L, P Histone H4 8355
115 3KUY 2 B, F Histone H4 8355
116 4R8P 2 B, F Histone H4 8355
117 3AZM 2 B, F Histone H4 9606
118 3X1U 3 B, F Histone H4 9606
119 3MGS 2 B, F Histone H4 8355
120 3WA9 2 B, F Histone H4 9606
121 3C1C 2 B, F Histone H4 8355
122 3AZH 2 B, F Histone H4 9606
123 5B40 2 B, F Histone H4 9606
124 3WAA 2 B, F Histone H4 9606
125 5CPI 2 B, F Histone H4 9606
126 3AZE 2 B, F Histone H4 9606
127 3W96 2 B, F Histone H4 9606
128 5CPJ 2 B, F Histone H4 9606
129 5B24 2 B, F Histone H4 9606
130 5BS7 2 C, D Histone H4 8355
131 5C3I 3 C, G, K, O, S, W Histone H4 9606
132 2HIO 4 D PROTEIN (HISTONE H4) 9031
133 4QLC 4 B, F Histone H4 7227
134 4LD9 2 B, F Histone H4 8355
135 3O62 2 B, F Histone H4 8355
136 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
137 5KDM 2 B Histone H4 9606
138 3W97 2 B, F Histone H4 9606
139 4YM5 2 B, F Histone H4 9606
140 4YM6 2 B, F Histone H4 9606
141 2FJ7 4 B, F Histone H4 8355
142 3W98 2 B, F Histone H4 9606
143 4ZUX 2 B, F, L, P Histone H4 8355
144 3AN2 2 B, F Histone H4 9606
145 5BSA 2 C, D Histone H4 8355
146 3B6F 4 B, F Histone H4 8355
147 3B6G 4 B, F Histone H4 8355
148 3KXB 2 B, F Histone H4 8355
149 5HQ2 2 B Histone H4 8355
150 1ZBB 4 B, F, b, f Histone H4 8355
151 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
152 3C9K 4 D, H Histone H4 9031