Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 338
95 % 46 131 105
90 % 46 134 103
70 % 46 135 116
50 % 47 138 140
40 % 47 138 157
30 % 47 138 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 122 85
95 % 50 141 80
90 % 51 146 73
70 % 51 146 87
50 % 51 146 128
40 % 51 146 144
30 % 51 146 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 120 113
90 % 41 129 106
70 % 42 133 106
50 % 45 140 127
40 % 45 140 143
30 % 45 140 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 119 116
90 % 38 122 116
70 % 40 128 125
50 % 40 128 153
40 % 40 128 171
30 % 40 128 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 3UTB 2 B, F Histone H4 8355
19 1M19 3 B, F Histone H4 8355
20 5AVB 2 B, F Histone H4 9606
21 5AVC 2 B, F Histone H4 9606
22 5AV5 2 B, F Histone H4 9606
23 3C1B 2 B, F Histone H4 8355
24 2NQB 3 B, F Histone H4 7227
25 5JA4 2 B Histone H4 9606
26 5F99 2 B, F Histone H4 8355
27 3UT9 2 B, F Histone H4 8355
28 3R45 2 B Histone H4 9606
29 4WU8 4 B, F Histone H4 8355
30 1P3I 3 B, F Histone H4 8355
31 3MGR 2 B, F Histone H4 8355
32 1F66 3 B, F HISTONE H4 10090
33 3AZG 2 B, F Histone H4 9606
34 1M18 3 B, F Histone H4 8355
35 5B2J 2 B, F Histone H4 9606
36 2PYO 4 B, F Histone H4 7227
37 1P3L 3 B, F Histone H4 8355
38 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
39 5B0Y 2 B, F Histone H4 9606
40 2CV5 3 B, F Histone H4 9606
41 5CP6 4 B, F Histone H4 8355
42 3MGP 2 B, F Histone H4 8355
43 3MVD 2 B, F Histone H4 8355
44 4J8U 2 B, F Histone H4 8355
45 4WU9 2 B, F Histone H4 8355
46 3REH 2 B, F Histone H4 8355
47 3AZL 2 B, F Histone H4 9606
48 3NQU 2 B Histone H4 9606
49 5BNV 2 B, E Histone H4 9606
50 3AFA 2 B, F Histone H4 9606
51 5E5A 3 B, F Histone H4 8355
52 3REJ 2 B, F Histone H4 8355
53 3AZF 2 B, F Histone H4 9606
54 1P3P 3 B, F Histone H4 8355
55 3AV1 2 B, F Histone H4 9606
56 1M1A 3 B, F Histone H4 8355
57 5CPK 2 B, F Histone H4 9606
58 5AY8 2 B, F Histone H4 9606
59 3MNN 2 B, F Histone H4 8355
60 5BO0 2 B Histone H4 9606
61 1P3G 3 B, F Histone H4 8355
62 4J8W 2 B, F Histone H4 8355
63 1P34 3 B, F Histone H4 8355
64 3X1V 3 B, F Histone H4 9606
65 4HGA 3 C Histone H4 9606
66 4UUZ 2 B HISTONE H4 7227
67 3MGQ 2 B, F Histone H4 8355
68 3WTP 2 B, F Histone H4 9606
69 3X1T 3 B, F Histone H4 9606
70 2NZD 4 B, F Histone H4 8355
71 3A6N 2 B, F Histone H4 9606
72 3LJA 2 B, F Histone H4 8355
73 3AZI 2 B, F Histone H4 9606
74 3TU4 2 B, F Histone H4 8355
75 1P3O 3 B, F Histone H4 8355
76 4Z2M 3 H, J Histone H4 9606
77 1KX4 3 B, F histone H4 8355
78 3AZN 2 B, F Histone H4 9606
79 1P3M 3 B, F Histone H4 8355
80 4J8V 2 B, F Histone H4 8355
81 3X1S 2 B, F Histone H4 9606
82 3LZ0 2 B, F Histone H4 8355
83 1P3F 3 B, F Histone H4 8355
84 1P3K 3 B, F Histone H4 8355
85 5B2I 2 B, F Histone H4 9606
86 1P3A 3 B, F Histone H4 8355
87 3LZ1 2 B, F Histone H4 8355
88 2IO5 3 C Histone H4 8355
89 2F8N 3 B, F Histone H4 8355
90 4Z5T 2 B, F Histone H4 9606
91 1U35 3 B, F Hist1h4i protein 10090
92 3AV2 2 B, F Histone H4 9606
93 3AYW 2 B, F Histone H4 9606
94 3AZJ 2 B, F Histone H4 9606
95 3REK 2 B, F Histone H4 8355
96 4KGC 2 B, F Histone H4 8355
97 1ZLA 3 B, F Histone H4 8355
98 3REL 2 B, F Histone H4 8355
99 3REI 2 B, F Histone H4 8355
100 1P3B 3 B, F Histone H4 8355
101 3WKJ 2 B, F Histone H4 9606
102 3AZK 2 B, F Histone H4 9606
103 4J8X 2 B, F Histone H4 8355
104 3LEL 2 B, F, L, P Histone H4 8355
105 3KUY 2 B, F Histone H4 8355
106 4R8P 2 B, F Histone H4 8355
107 3AZM 2 B, F Histone H4 9606
108 3X1U 3 B, F Histone H4 9606
109 3MGS 2 B, F Histone H4 8355
110 3WA9 2 B, F Histone H4 9606
111 3C1C 2 B, F Histone H4 8355
112 3AZH 2 B, F Histone H4 9606
113 5B40 2 B, F Histone H4 9606
114 3WAA 2 B, F Histone H4 9606
115 5CPI 2 B, F Histone H4 9606
116 3AZE 2 B, F Histone H4 9606
117 3W96 2 B, F Histone H4 9606
118 5CPJ 2 B, F Histone H4 9606
119 5B24 2 B, F Histone H4 9606
120 5BS7 2 C, D Histone H4 8355
121 5C3I 3 C, G, K, O, S, W Histone H4 9606
122 2HIO 4 D PROTEIN (HISTONE H4) 9031
123 4QLC 4 B, F Histone H4 7227
124 4LD9 2 B, F Histone H4 8355
125 3O62 2 B, F Histone H4 8355
126 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
127 3W97 2 B, F Histone H4 9606
128 4YM5 2 B, F Histone H4 9606
129 4YM6 2 B, F Histone H4 9606
130 2FJ7 4 B, F Histone H4 8355
131 3W98 2 B, F Histone H4 9606
132 4ZUX 2 B, F, L, P Histone H4 8355
133 3AN2 2 B, F Histone H4 9606
134 5BSA 2 C, D Histone H4 8355
135 3B6F 4 B, F Histone H4 8355
136 3B6G 4 B, F Histone H4 8355
137 3KXB 2 B, F Histone H4 8355
138 5HQ2 2 B Histone H4 8355
139 1ZBB 4 B, F, b, f Histone H4 8355
140 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
141 3C9K 4 D, H Histone H4 9031