Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 324
95 % 48 137 100
90 % 48 140 88
70 % 48 141 100
50 % 49 144 133
40 % 49 144 152
30 % 49 144 170
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 128 83
95 % 52 147 73
90 % 53 152 74
70 % 53 152 88
50 % 53 152 126
40 % 53 152 143
30 % 53 152 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 248
95 % 40 125 111
90 % 43 134 96
70 % 44 138 94
50 % 49 148 124
40 % 49 148 142
30 % 49 148 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 267
95 % 40 124 113
90 % 40 127 116
70 % 42 133 120
50 % 42 133 149
40 % 42 133 166
30 % 42 133 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5B31 2 B, F Histone H4 9606
19 3UTB 2 B, F Histone H4 8355
20 1M19 3 B, F Histone H4 8355
21 5AVB 2 B, F Histone H4 9606
22 5AVC 2 B, F Histone H4 9606
23 5AV5 2 B, F Histone H4 9606
24 3C1B 2 B, F Histone H4 8355
25 2NQB 3 B, F Histone H4 7227
26 5JA4 2 B Histone H4 9606
27 5F99 2 B, F Histone H4 8355
28 3UT9 2 B, F Histone H4 8355
29 5B32 2 B, F Histone H4 9606
30 3R45 2 B Histone H4 9606
31 4WU8 4 B, F Histone H4 8355
32 1P3I 3 B, F Histone H4 8355
33 3MGR 2 B, F Histone H4 8355
34 1F66 3 B, F HISTONE H4 10090
35 3AZG 2 B, F Histone H4 9606
36 1M18 3 B, F Histone H4 8355
37 5B2J 2 B, F Histone H4 9606
38 2PYO 4 B, F Histone H4 7227
39 1P3L 3 B, F Histone H4 8355
40 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
41 5B0Y 2 B, F Histone H4 9606
42 2CV5 3 B, F Histone H4 9606
43 5CP6 4 B, F Histone H4 8355
44 3MGP 2 B, F Histone H4 8355
45 3MVD 2 B, F Histone H4 8355
46 4J8U 2 B, F Histone H4 8355
47 4WU9 2 B, F Histone H4 8355
48 3REH 2 B, F Histone H4 8355
49 3AZL 2 B, F Histone H4 9606
50 3NQU 2 B Histone H4 9606
51 5BNV 2 B, E Histone H4 9606
52 3AFA 2 B, F Histone H4 9606
53 5E5A 3 B, F Histone H4 8355
54 3REJ 2 B, F Histone H4 8355
55 3AZF 2 B, F Histone H4 9606
56 1P3P 3 B, F Histone H4 8355
57 3AV1 2 B, F Histone H4 9606
58 1M1A 3 B, F Histone H4 8355
59 5CPK 2 B, F Histone H4 9606
60 5AY8 2 B, F Histone H4 9606
61 3MNN 2 B, F Histone H4 8355
62 5BO0 2 B Histone H4 9606
63 1P3G 3 B, F Histone H4 8355
64 4J8W 2 B, F Histone H4 8355
65 1P34 3 B, F Histone H4 8355
66 3X1V 3 B, F Histone H4 9606
67 5DNM 2 B, F Histone H4 8355
68 4HGA 3 C Histone H4 9606
69 4UUZ 2 B HISTONE H4 7227
70 3MGQ 2 B, F Histone H4 8355
71 3WTP 2 B, F Histone H4 9606
72 3X1T 3 B, F Histone H4 9606
73 2NZD 4 B, F Histone H4 8355
74 3A6N 2 B, F Histone H4 9606
75 5DNN 2 B, F Histone H4 8355
76 3LJA 2 B, F Histone H4 8355
77 3AZI 2 B, F Histone H4 9606
78 3TU4 2 B, F Histone H4 8355
79 1P3O 3 B, F Histone H4 8355
80 4Z2M 3 H, J Histone H4 9606
81 1KX4 3 B, F histone H4 8355
82 3AZN 2 B, F Histone H4 9606
83 1P3M 3 B, F Histone H4 8355
84 4J8V 2 B, F Histone H4 8355
85 5B33 2 B, F Histone H4 9606
86 3X1S 2 B, F Histone H4 9606
87 3LZ0 2 B, F Histone H4 8355
88 1P3F 3 B, F Histone H4 8355
89 1P3K 3 B, F Histone H4 8355
90 5B2I 2 B, F Histone H4 9606
91 1P3A 3 B, F Histone H4 8355
92 3LZ1 2 B, F Histone H4 8355
93 2IO5 3 C Histone H4 8355
94 2F8N 3 B, F Histone H4 8355
95 4Z5T 2 B, F Histone H4 9606
96 1U35 3 B, F Hist1h4i protein 10090
97 3AV2 2 B, F Histone H4 9606
98 3AYW 2 B, F Histone H4 9606
99 3AZJ 2 B, F Histone H4 9606
100 3REK 2 B, F Histone H4 8355
101 4KGC 2 B, F Histone H4 8355
102 1ZLA 3 B, F Histone H4 8355
103 3REL 2 B, F Histone H4 8355
104 3REI 2 B, F Histone H4 8355
105 1P3B 3 B, F Histone H4 8355
106 3WKJ 2 B, F Histone H4 9606
107 3AZK 2 B, F Histone H4 9606
108 4J8X 2 B, F Histone H4 8355
109 3LEL 2 B, F, L, P Histone H4 8355
110 3KUY 2 B, F Histone H4 8355
111 4R8P 2 B, F Histone H4 8355
112 3AZM 2 B, F Histone H4 9606
113 3X1U 3 B, F Histone H4 9606
114 3MGS 2 B, F Histone H4 8355
115 3WA9 2 B, F Histone H4 9606
116 3C1C 2 B, F Histone H4 8355
117 3AZH 2 B, F Histone H4 9606
118 5B40 2 B, F Histone H4 9606
119 3WAA 2 B, F Histone H4 9606
120 5CPI 2 B, F Histone H4 9606
121 3AZE 2 B, F Histone H4 9606
122 3W96 2 B, F Histone H4 9606
123 5CPJ 2 B, F Histone H4 9606
124 5B24 2 B, F Histone H4 9606
125 5BS7 2 C, D Histone H4 8355
126 5C3I 3 C, G, K, O, S, W Histone H4 9606
127 2HIO 4 D PROTEIN (HISTONE H4) 9031
128 4QLC 4 B, F Histone H4 7227
129 4LD9 2 B, F Histone H4 8355
130 3O62 2 B, F Histone H4 8355
131 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
132 5KDM 2 B Histone H4 9606
133 3W97 2 B, F Histone H4 9606
134 4YM5 2 B, F Histone H4 9606
135 4YM6 2 B, F Histone H4 9606
136 2FJ7 4 B, F Histone H4 8355
137 3W98 2 B, F Histone H4 9606
138 4ZUX 2 B, F, L, P Histone H4 8355
139 3AN2 2 B, F Histone H4 9606
140 5BSA 2 C, D Histone H4 8355
141 3B6F 4 B, F Histone H4 8355
142 3B6G 4 B, F Histone H4 8355
143 3KXB 2 B, F Histone H4 8355
144 5HQ2 2 B Histone H4 8355
145 1ZBB 4 B, F, b, f Histone H4 8355
146 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
147 3C9K 4 D, H Histone H4 9031