Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 42 311
95 % 52 151 76
90 % 52 154 78
70 % 52 155 93
50 % 53 158 128
40 % 53 158 145
30 % 53 158 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 142 62
95 % 56 161 74
90 % 57 166 73
70 % 57 166 86
50 % 57 166 122
40 % 57 166 140
30 % 57 166 154
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 54 252
95 % 45 141 81
90 % 47 149 79
70 % 49 155 89
50 % 54 165 116
40 % 54 165 138
30 % 54 165 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 48 270
95 % 44 136 108
90 % 44 141 91
70 % 47 148 100
50 % 47 148 139
40 % 47 148 156
30 % 47 148 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5X7X 2 B, F Histone H4 9606
19 5B31 2 B, F Histone H4 9606
20 5B1L 2 B, F Histone H4 10090
21 3UTB 2 B, F Histone H4 8355
22 1M19 3 B, F Histone H4 8355
23 5AVB 2 B, F Histone H4 9606
24 5AVC 2 B, F Histone H4 9606
25 5AV5 2 B, F Histone H4 9606
26 3C1B 2 B, F Histone H4 8355
27 5B1M 2 B, F Histone H4 10090
28 2NQB 3 B, F Histone H4 7227
29 5JA4 2 B Histone H4 9606
30 5F99 2 B, F Histone H4 8355
31 5JRG 2 B, F Histone H4 9606
32 3UT9 2 B, F Histone H4 8355
33 5B32 2 B, F Histone H4 9606
34 3R45 2 B Histone H4 9606
35 4WU8 4 B, F Histone H4 8355
36 1P3I 3 B, F Histone H4 8355
37 3MGR 2 B, F Histone H4 8355
38 1F66 3 B, F HISTONE H4 10090
39 3AZG 2 B, F Histone H4 9606
40 1M18 3 B, F Histone H4 8355
41 5B2J 2 B, F Histone H4 9606
42 2PYO 4 B, F Histone H4 7227
43 1P3L 3 B, F Histone H4 8355
44 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
45 5B0Y 2 B, F Histone H4 9606
46 2CV5 3 B, F Histone H4 9606
47 5CP6 4 B, F Histone H4 8355
48 3MGP 2 B, F Histone H4 8355
49 3MVD 2 B, F Histone H4 8355
50 4J8U 2 B, F Histone H4 8355
51 4WU9 2 B, F Histone H4 8355
52 3REH 2 B, F Histone H4 8355
53 3AZL 2 B, F Histone H4 9606
54 3NQU 2 B Histone H4 9606
55 5BNV 2 B, E Histone H4 9606
56 3AFA 2 B, F Histone H4 9606
57 5E5A 3 B, F Histone H4 8355
58 3REJ 2 B, F Histone H4 8355
59 3AZF 2 B, F Histone H4 9606
60 5GTC 2 B, F Histone H4 9606
61 1P3P 3 B, F Histone H4 8355
62 3AV1 2 B, F Histone H4 9606
63 1M1A 3 B, F Histone H4 8355
64 5CPK 2 B, F Histone H4 9606
65 5AY8 2 B, F Histone H4 9606
66 3MNN 2 B, F Histone H4 8355
67 5BO0 2 B Histone H4 9606
68 1P3G 3 B, F Histone H4 8355
69 4J8W 2 B, F Histone H4 8355
70 1P34 3 B, F Histone H4 8355
71 3X1V 3 B, F Histone H4 9606
72 5DNM 2 B, F Histone H4 8355
73 4HGA 3 C Histone H4 9606
74 4UUZ 2 B HISTONE H4 7227
75 3MGQ 2 B, F Histone H4 8355
76 3WTP 2 B, F Histone H4 9606
77 3X1T 3 B, F Histone H4 9606
78 2NZD 4 B, F Histone H4 8355
79 3A6N 2 B, F Histone H4 9606
80 5DNN 2 B, F Histone H4 8355
81 5GT3 2 B, F Histone H4 9606
82 5GT0 2 B, F Histone H4 9606
83 3LJA 2 B, F Histone H4 8355
84 3AZI 2 B, F Histone H4 9606
85 3TU4 2 B, F Histone H4 8355
86 1P3O 3 B, F Histone H4 8355
87 4Z2M 3 H, J Histone H4 9606
88 1KX4 3 B, F histone H4 8355
89 3AZN 2 B, F Histone H4 9606
90 1P3M 3 B, F Histone H4 8355
91 4J8V 2 B, F Histone H4 8355
92 5B33 2 B, F Histone H4 9606
93 3X1S 2 B, F Histone H4 9606
94 3LZ0 2 B, F Histone H4 8355
95 1P3F 3 B, F Histone H4 8355
96 1P3K 3 B, F Histone H4 8355
97 5B2I 2 B, F Histone H4 9606
98 1P3A 3 B, F Histone H4 8355
99 3LZ1 2 B, F Histone H4 8355
100 2IO5 3 C Histone H4 8355
101 5GXQ 2 B, F Histone H4 9606
102 2F8N 3 B, F Histone H4 8355
103 4Z5T 2 B, F Histone H4 9606
104 1U35 3 B, F Hist1h4i protein 10090
105 3AV2 2 B, F Histone H4 9606
106 3AYW 2 B, F Histone H4 9606
107 3AZJ 2 B, F Histone H4 9606
108 3REK 2 B, F Histone H4 8355
109 4KGC 2 B, F Histone H4 8355
110 1ZLA 3 B, F Histone H4 8355
111 5GSU 2 B, F Histone H4 9606
112 3REL 2 B, F Histone H4 8355
113 5GSE 2 B, F, L, P Histone H4 9606
114 3REI 2 B, F Histone H4 8355
115 1P3B 3 B, F Histone H4 8355
116 3WKJ 2 B, F Histone H4 9606
117 3AZK 2 B, F Histone H4 9606
118 4J8X 2 B, F Histone H4 8355
119 3LEL 2 B, F, L, P Histone H4 8355
120 3KUY 2 B, F Histone H4 8355
121 4R8P 2 B, F Histone H4 8355
122 3AZM 2 B, F Histone H4 9606
123 3X1U 3 B, F Histone H4 9606
124 3MGS 2 B, F Histone H4 8355
125 3WA9 2 B, F Histone H4 9606
126 3C1C 2 B, F Histone H4 8355
127 3AZH 2 B, F Histone H4 9606
128 5B40 2 B, F Histone H4 9606
129 3WAA 2 B, F Histone H4 9606
130 5CPI 2 B, F Histone H4 9606
131 3AZE 2 B, F Histone H4 9606
132 3W96 2 B, F Histone H4 9606
133 5CPJ 2 B, F Histone H4 9606
134 5B24 2 B, F Histone H4 9606
135 5BS7 2 C, D Histone H4 8355
136 5C3I 3 C, G, K, O, S, W Histone H4 9606
137 2HIO 4 D PROTEIN (HISTONE H4) 9031
138 4QLC 4 B, F Histone H4 7227
139 4LD9 2 B, F Histone H4 8355
140 3O62 2 B, F Histone H4 8355
141 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
142 5KDM 2 B Histone H4 9606
143 3W97 2 B, F Histone H4 9606
144 4YM5 2 B, F Histone H4 9606
145 4YM6 2 B, F Histone H4 9606
146 2FJ7 4 B, F Histone H4 8355
147 3W98 2 B, F Histone H4 9606
148 4ZUX 2 B, F, L, P Histone H4 8355
149 3AN2 2 B, F Histone H4 9606
150 5BSA 2 C, D Histone H4 8355
151 3B6F 4 B, F Histone H4 8355
152 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
153 3B6G 4 B, F Histone H4 8355
154 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
155 3KXB 2 B, F Histone H4 8355
156 5HQ2 2 B Histone H4 8355
157 1ZBB 4 B, F, b, f Histone H4 8355
158 5X0X 2 B, F Histone H4 8355
159 5X0Y 2 B, F Histone H4 8355
160 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
161 3C9K 4 D, H Histone H4 9031