Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 42 311
95 % 52 151 76
90 % 52 154 78
70 % 52 155 93
50 % 53 158 128
40 % 53 158 145
30 % 53 158 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 142 62
95 % 56 161 74
90 % 57 166 73
70 % 57 166 86
50 % 57 166 122
40 % 57 166 140
30 % 57 166 154
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 54 252
95 % 45 141 81
90 % 47 149 79
70 % 49 155 89
50 % 54 165 116
40 % 54 165 138
30 % 54 165 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 48 270
95 % 44 136 108
90 % 44 141 91
70 % 47 148 100
50 % 47 148 139
40 % 47 148 156
30 % 47 148 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5X7X 2 B, F Histone H4 9606
19 5B31 2 B, F Histone H4 9606
20 5B1L 2 B, F Histone H4 10090
21 3UTB 2 B, F Histone H4 8355
22 1M19 3 B, F Histone H4 8355
23 5AVB 2 B, F Histone H4 9606
24 5AVC 2 B, F Histone H4 9606
25 5AV5 2 B, F Histone H4 9606
26 3C1B 2 B, F Histone H4 8355
27 5B1M 2 B, F Histone H4 10090
28 2NQB 3 B, F Histone H4 7227
29 5JA4 2 B Histone H4 9606
30 5F99 2 B, F Histone H4 8355
31 5JRG 2 B, F Histone H4 9606
32 3UT9 2 B, F Histone H4 8355
33 5B32 2 B, F Histone H4 9606
34 3R45 2 B Histone H4 9606
35 4WU8 4 B, F Histone H4 8355
36 1P3I 3 B, F Histone H4 8355
37 3MGR 2 B, F Histone H4 8355
38 1F66 3 B, F HISTONE H4 10090
39 3AZG 2 B, F Histone H4 9606
40 1M18 3 B, F Histone H4 8355
41 5B2J 2 B, F Histone H4 9606
42 2PYO 4 B, F Histone H4 7227
43 1P3L 3 B, F Histone H4 8355
44 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
45 5B0Y 2 B, F Histone H4 9606
46 2CV5 3 B, F Histone H4 9606
47 5CP6 4 B, F Histone H4 8355
48 3MGP 2 B, F Histone H4 8355
49 3MVD 2 B, F Histone H4 8355
50 4J8U 2 B, F Histone H4 8355
51 4WU9 2 B, F Histone H4 8355
52 2YFW 2 B, D, F, H HISTONE H4 28985
53 3REH 2 B, F Histone H4 8355
54 3AZL 2 B, F Histone H4 9606
55 3NQU 2 B Histone H4 9606
56 5BNV 2 B, E Histone H4 9606
57 3AFA 2 B, F Histone H4 9606
58 5E5A 3 B, F Histone H4 8355
59 3REJ 2 B, F Histone H4 8355
60 3AZF 2 B, F Histone H4 9606
61 5GTC 2 B, F Histone H4 9606
62 1P3P 3 B, F Histone H4 8355
63 3AV1 2 B, F Histone H4 9606
64 1M1A 3 B, F Histone H4 8355
65 5CPK 2 B, F Histone H4 9606
66 5AY8 2 B, F Histone H4 9606
67 3MNN 2 B, F Histone H4 8355
68 5BO0 2 B Histone H4 9606
69 1P3G 3 B, F Histone H4 8355
70 4J8W 2 B, F Histone H4 8355
71 1P34 3 B, F Histone H4 8355
72 3X1V 3 B, F Histone H4 9606
73 5DNM 2 B, F Histone H4 8355
74 4HGA 3 C Histone H4 9606
75 4UUZ 2 B HISTONE H4 7227
76 3MGQ 2 B, F Histone H4 8355
77 3WTP 2 B, F Histone H4 9606
78 3X1T 3 B, F Histone H4 9606
79 2NZD 4 B, F Histone H4 8355
80 3A6N 2 B, F Histone H4 9606
81 5DNN 2 B, F Histone H4 8355
82 5GT3 2 B, F Histone H4 9606
83 5GT0 2 B, F Histone H4 9606
84 3LJA 2 B, F Histone H4 8355
85 3AZI 2 B, F Histone H4 9606
86 3TU4 2 B, F Histone H4 8355
87 1P3O 3 B, F Histone H4 8355
88 4Z2M 3 H, J Histone H4 9606
89 1KX4 3 B, F histone H4 8355
90 3AZN 2 B, F Histone H4 9606
91 1P3M 3 B, F Histone H4 8355
92 4J8V 2 B, F Histone H4 8355
93 5B33 2 B, F Histone H4 9606
94 3X1S 2 B, F Histone H4 9606
95 3LZ0 2 B, F Histone H4 8355
96 1P3F 3 B, F Histone H4 8355
97 1P3K 3 B, F Histone H4 8355
98 4XYI 2 B Histone H4 4897
99 5B2I 2 B, F Histone H4 9606
100 1P3A 3 B, F Histone H4 8355
101 3LZ1 2 B, F Histone H4 8355
102 2IO5 3 C Histone H4 8355
103 5GXQ 2 B, F Histone H4 9606
104 2F8N 3 B, F Histone H4 8355
105 4Z5T 2 B, F Histone H4 9606
106 1U35 3 B, F Hist1h4i protein 10090
107 3AV2 2 B, F Histone H4 9606
108 3AYW 2 B, F Histone H4 9606
109 3AZJ 2 B, F Histone H4 9606
110 3REK 2 B, F Histone H4 8355
111 4KGC 2 B, F Histone H4 8355
112 1ZLA 3 B, F Histone H4 8355
113 5GSU 2 B, F Histone H4 9606
114 3REL 2 B, F Histone H4 8355
115 5GSE 2 B, F, L, P Histone H4 9606
116 3REI 2 B, F Histone H4 8355
117 1P3B 3 B, F Histone H4 8355
118 3WKJ 2 B, F Histone H4 9606
119 4KUD 2 B, F Histone H4 4932
120 3AZK 2 B, F Histone H4 9606
121 4J8X 2 B, F Histone H4 8355
122 3LEL 2 B, F, L, P Histone H4 8355
123 3KUY 2 B, F Histone H4 8355
124 4R8P 2 B, F Histone H4 8355
125 3AZM 2 B, F Histone H4 9606
126 3X1U 3 B, F Histone H4 9606
127 3MGS 2 B, F Histone H4 8355
128 3WA9 2 B, F Histone H4 9606
129 1ID3 3 B, F HISTONE H4 4932
130 3C1C 2 B, F Histone H4 8355
131 3AZH 2 B, F Histone H4 9606
132 5B40 2 B, F Histone H4 9606
133 3WAA 2 B, F Histone H4 9606
134 5CPI 2 B, F Histone H4 9606
135 4JJN 2 B, F Histone H4 4932
136 3AZE 2 B, F Histone H4 9606
137 3W96 2 B, F Histone H4 9606
138 5CPJ 2 B, F Histone H4 9606
139 5B24 2 B, F Histone H4 9606
140 5BS7 2 C, D Histone H4 8355
141 5C3I 3 C, G, K, O, S, W Histone H4 9606
142 2HIO 4 D PROTEIN (HISTONE H4) 9031
143 4QLC 4 B, F Histone H4 7227
144 4LD9 2 B, F Histone H4 8355
145 3O62 2 B, F Histone H4 8355
146 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
147 5KDM 2 B Histone H4 9606
148 3W97 2 B, F Histone H4 9606
149 4YM5 2 B, F Histone H4 9606
150 4YM6 2 B, F Histone H4 9606
151 2FJ7 4 B, F Histone H4 8355
152 3W98 2 B, F Histone H4 9606
153 4ZUX 2 B, F, L, P Histone H4 8355
154 3AN2 2 B, F Histone H4 9606
155 5BSA 2 C, D Histone H4 8355
156 3B6F 4 B, F Histone H4 8355
157 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
158 3B6G 4 B, F Histone H4 8355
159 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
160 3KXB 2 B, F Histone H4 8355
161 5HQ2 2 B Histone H4 8355
162 1ZBB 4 B, F, b, f Histone H4 8355
163 5X0X 2 B, F Histone H4 8355
164 5X0Y 2 B, F Histone H4 8355
165 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
166 3C9K 4 D, H Histone H4 9031