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The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 163 Members. Sequence cutoff: 40% Cluster size: 101 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1TZY 4 D, H HISTONE H4-VI 9031  
2 4H9N 2 B Histone H4 9606  
3 4H9Q 2 B Histone H4 9606  
4 1KX5 4 B, F histone H4 8355  
5 4H9O 2 B Histone H4 9606  
6 2ARO 4 D, H HISTONE H4-VI 9031  
7 4H9R 2 B Histone H4 9606  
8 1S32 3 B, F Histone H4 8355  
9 4H9P 2 B Histone H4 9606  
10 1KX3 3 B, F histone H4 8355  
11 1HQ3 4 D, H HISTONE H4-VI 9031  
12 3UTA 2 B, F Histone H4 8355  
13 3UTB 2 B, F Histone H4 8355  
14 1M19 3 B, F Histone H4 8355  
15 3C1B 2 B, F Histone H4 8355  
16 2NQB 3 B, F Histone H4 7227  
17 3UT9 2 B, F Histone H4 8355  
18 3R45 2 B Histone H4 9606  
19 1P3I 3 B, F Histone H4 8355  
20 3MGR 2 B, F Histone H4 8355  
21 1F66 3 B, F HISTONE H4 10090  
22 3AZG 2 B, F Histone H4 9606  
23 1M18 3 B, F Histone H4 8355  
24 2PYO 4 B, F Histone H4 7227  
25 1P3L 3 B, F Histone H4 8355  
26 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031  
27 2CV5 3 B, F Histone H4 9606  
28 3MGP 2 B, F Histone H4 8355  
29 3MVD 2 B, F Histone H4 8355  
30 4J8U 2 B, F Histone H4 8355  
31 2YFW 2 B, D, F, H HISTONE H4 284590  
32 3REH 2 B, F Histone H4 8355  
33 3AZL 2 B, F Histone H4 9606  
34 3NQU 2 B Histone H4 9606  
35 3AFA 2 B, F Histone H4 9606  
36 3REJ 2 B, F Histone H4 8355  
37 3AZF 2 B, F Histone H4 9606  
38 1P3P 3 B, F Histone H4 8355  
39 3AV1 2 B, F Histone H4 9606  
40 1M1A 3 B, F Histone H4 8355  
41 3MNN 2 B, F Histone H4 8355  
42 1P3G 3 B, F Histone H4 8355  
43 4J8W 2 B, F Histone H4 8355  
44 1P34 3 B, F Histone H4 8355  
45 4HGA 3 C Histone H4 9606  
46 3MGQ 2 B, F Histone H4 8355  
47 2NZD 4 B, F Histone H4 8355  
48 3A6N 2 B, F Histone H4 9606  
49 3LJA 2 B, F Histone H4 8355  
50 3AZI 2 B, F Histone H4 9606  
51 3TU4 2 B, F Histone H4 8355  
52 1P3O 3 B, F Histone H4 8355  
53 1KX4 3 B, F histone H4 8355  
54 3AZN 2 B, F Histone H4 9606  
55 1P3M 3 B, F Histone H4 8355  
56 4J8V 2 B, F Histone H4 8355  
57 3LZ0 2 B, F Histone H4 8355  
58 1P3F 3 B, F Histone H4 8355  
59 1P3K 3 B, F Histone H4 8355  
60 1P3A 3 B, F Histone H4 8355  
61 3LZ1 2 B, F Histone H4 8355  
62 2IO5 3 C Histone H4 8355  
63 2F8N 3 B, F Histone H4 8355  
64 1U35 3 B, F Hist1h4i protein 10090  
65 3AV2 2 B, F Histone H4 9606  
66 3AYW 2 B, F Histone H4 9606  
67 3AZJ 2 B, F Histone H4 9606  
68 3REK 2 B, F Histone H4 8355  
69 4KGC 2 B, F Histone H4 8355  
70 1ZLA 3 B, F Histone H4 8355  
71 3REL 2 B, F Histone H4 8355  
72 3REI 2 B, F Histone H4 8355  
73 1P3B 3 B, F Histone H4 8355  
74 3WKJ 2 B, F Histone H4 9606  
75 4KUD 2 B, F Histone H4 559292  
76 3AZK 2 B, F Histone H4 9606  
77 4J8X 2 B, F Histone H4 8355  
78 3LEL 2 B, F, L, P Histone H4 8355  
79 3KUY 2 B, F Histone H4 8355  
80 3AZM 2 B, F Histone H4 9606  
81 3MGS 2 B, F Histone H4 8355  
82 3WA9 2 B, F Histone H4 9606  
83 1ID3 3 B, F HISTONE H4 4932  
84 3C1C 2 B, F Histone H4 8355  
85 3AZH 2 B, F Histone H4 9606  
86 3WAA 2 B, F Histone H4 9606  
87 4JJN 2 B, F Histone H4 559292  
88 3AZE 2 B, F Histone H4 9606  
89 3W96 2 B, F Histone H4 9606  
90 2HIO 4 D PROTEIN (HISTONE H4) 9031  
91 4LD9 2 B, F Histone H4 8355  
92 3O62 2 B, F Histone H4 8355  
93 3W97 2 B, F Histone H4 9606  
94 2FJ7 4 B, F Histone H4 8355  
95 3W98 2 B, F Histone H4 9606  
96 3AN2 2 B, F Histone H4 9606  
97 3B6F 4 B, F Histone H4 8355  
98 3B6G 4 B, F Histone H4 8355  
99 3KXB 2 B, F Histone H4 8355  
100 1ZBB 4 B, F, b, f Histone H4 8355  
101 3C9K 4 D, H Histone H4 9031  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 933
95% 33 95 82
90% 33 98 85
70% 33 98 105
50% 34 100 139
40% 34 100 168
30% 34 100 191
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 82 60
95% 34 97 79
90% 35 101 80
70% 35 101 100
50% 35 101 134
40% 35 101 163
30% 35 101 187
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 548
95% 24 84 86
90% 27 90 91
70% 27 93 106
50% 29 99 131
40% 29 99 159
30% 29 99 183
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 586
95% 25 84 88
90% 25 86 96
70% 27 92 109
50% 27 92 147
40% 27 92 174
30% 27 92 197
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.