Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 333
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 155
30 % 47 137 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 84
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 143
30 % 51 145 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 112
90 % 41 128 108
70 % 42 132 112
50 % 45 139 128
40 % 45 139 142
30 % 45 139 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 115
90 % 38 121 118
70 % 40 127 125
50 % 40 127 152
40 % 40 127 169
30 % 40 127 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 3UTB 2 B, F Histone H4 8355
19 1M19 3 B, F Histone H4 8355
20 5AVB 2 B, F Histone H4 9606
21 5AVC 2 B, F Histone H4 9606
22 5AV5 2 B, F Histone H4 9606
23 3C1B 2 B, F Histone H4 8355
24 2NQB 3 B, F Histone H4 7227
25 5JA4 2 B Histone H4 9606
26 5F99 2 B, F Histone H4 8355
27 3UT9 2 B, F Histone H4 8355
28 3R45 2 B Histone H4 9606
29 4WU8 4 B, F Histone H4 8355
30 1P3I 3 B, F Histone H4 8355
31 3MGR 2 B, F Histone H4 8355
32 1F66 3 B, F HISTONE H4 10090
33 3AZG 2 B, F Histone H4 9606
34 1M18 3 B, F Histone H4 8355
35 5B2J 2 B, F Histone H4 9606
36 2PYO 4 B, F Histone H4 7227
37 1P3L 3 B, F Histone H4 8355
38 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
39 5B0Y 2 B, F Histone H4 9606
40 2CV5 3 B, F Histone H4 9606
41 5CP6 4 B, F Histone H4 8355
42 3MGP 2 B, F Histone H4 8355
43 3MVD 2 B, F Histone H4 8355
44 4J8U 2 B, F Histone H4 8355
45 4WU9 2 B, F Histone H4 8355
46 2YFW 2 B, D, F, H HISTONE H4 28985
47 3REH 2 B, F Histone H4 8355
48 3AZL 2 B, F Histone H4 9606
49 3NQU 2 B Histone H4 9606
50 5BNV 2 B, E Histone H4 9606
51 3AFA 2 B, F Histone H4 9606
52 5E5A 3 B, F Histone H4 8355
53 3REJ 2 B, F Histone H4 8355
54 3AZF 2 B, F Histone H4 9606
55 1P3P 3 B, F Histone H4 8355
56 3AV1 2 B, F Histone H4 9606
57 1M1A 3 B, F Histone H4 8355
58 5CPK 2 B, F Histone H4 9606
59 5AY8 2 B, F Histone H4 9606
60 3MNN 2 B, F Histone H4 8355
61 5BO0 2 B Histone H4 9606
62 1P3G 3 B, F Histone H4 8355
63 4J8W 2 B, F Histone H4 8355
64 1P34 3 B, F Histone H4 8355
65 3X1V 3 B, F Histone H4 9606
66 4HGA 3 C Histone H4 9606
67 4UUZ 2 B HISTONE H4 7227
68 3MGQ 2 B, F Histone H4 8355
69 3WTP 2 B, F Histone H4 9606
70 3X1T 3 B, F Histone H4 9606
71 2NZD 4 B, F Histone H4 8355
72 3A6N 2 B, F Histone H4 9606
73 3LJA 2 B, F Histone H4 8355
74 3AZI 2 B, F Histone H4 9606
75 3TU4 2 B, F Histone H4 8355
76 1P3O 3 B, F Histone H4 8355
77 4Z2M 3 H, J Histone H4 9606
78 1KX4 3 B, F histone H4 8355
79 3AZN 2 B, F Histone H4 9606
80 1P3M 3 B, F Histone H4 8355
81 4J8V 2 B, F Histone H4 8355
82 3X1S 2 B, F Histone H4 9606
83 3LZ0 2 B, F Histone H4 8355
84 1P3F 3 B, F Histone H4 8355
85 1P3K 3 B, F Histone H4 8355
86 4XYI 2 B Histone H4 4897
87 5B2I 2 B, F Histone H4 9606
88 1P3A 3 B, F Histone H4 8355
89 3LZ1 2 B, F Histone H4 8355
90 2IO5 3 C Histone H4 8355
91 2F8N 3 B, F Histone H4 8355
92 4Z5T 2 B, F Histone H4 9606
93 1U35 3 B, F Hist1h4i protein 10090
94 3AV2 2 B, F Histone H4 9606
95 3AYW 2 B, F Histone H4 9606
96 3AZJ 2 B, F Histone H4 9606
97 3REK 2 B, F Histone H4 8355
98 4KGC 2 B, F Histone H4 8355
99 1ZLA 3 B, F Histone H4 8355
100 3REL 2 B, F Histone H4 8355
101 3REI 2 B, F Histone H4 8355
102 1P3B 3 B, F Histone H4 8355
103 3WKJ 2 B, F Histone H4 9606
104 4KUD 2 B, F Histone H4 4932
105 3AZK 2 B, F Histone H4 9606
106 4J8X 2 B, F Histone H4 8355
107 3LEL 2 B, F, L, P Histone H4 8355
108 3KUY 2 B, F Histone H4 8355
109 4R8P 2 B, F Histone H4 8355
110 3AZM 2 B, F Histone H4 9606
111 3X1U 3 B, F Histone H4 9606
112 3MGS 2 B, F Histone H4 8355
113 3WA9 2 B, F Histone H4 9606
114 1ID3 3 B, F HISTONE H4 4932
115 3C1C 2 B, F Histone H4 8355
116 3AZH 2 B, F Histone H4 9606
117 5B40 2 B, F Histone H4 9606
118 3WAA 2 B, F Histone H4 9606
119 5CPI 2 B, F Histone H4 9606
120 4JJN 2 B, F Histone H4 4932
121 3AZE 2 B, F Histone H4 9606
122 3W96 2 B, F Histone H4 9606
123 5CPJ 2 B, F Histone H4 9606
124 5B24 2 B, F Histone H4 9606
125 5BS7 2 C, D Histone H4 8355
126 5C3I 3 C, G, K, O, S, W Histone H4 9606
127 2HIO 4 D PROTEIN (HISTONE H4) 9031
128 4QLC 4 B, F Histone H4 7227
129 4LD9 2 B, F Histone H4 8355
130 3O62 2 B, F Histone H4 8355
131 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
132 3W97 2 B, F Histone H4 9606
133 4YM5 2 B, F Histone H4 9606
134 4YM6 2 B, F Histone H4 9606
135 2FJ7 4 B, F Histone H4 8355
136 3W98 2 B, F Histone H4 9606
137 4ZUX 2 B, F, L, P Histone H4 8355
138 3AN2 2 B, F Histone H4 9606
139 5BSA 2 C, D Histone H4 8355
140 3B6F 4 B, F Histone H4 8355
141 3B6G 4 B, F Histone H4 8355
142 3KXB 2 B, F Histone H4 8355
143 5HQ2 2 B Histone H4 8355
144 1ZBB 4 B, F, b, f Histone H4 8355
145 3C9K 4 D, H Histone H4 9031