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The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 186 Members. Sequence cutoff: 30% Cluster size: 113 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1TZY 4 D, H HISTONE H4-VI 9031  
2 4H9N 2 B Histone H4 9606  
3 4H9Q 2 B Histone H4 9606  
4 1KX5 4 B, F histone H4 8355  
5 4H9O 2 B Histone H4 9606  
6 2ARO 4 D, H HISTONE H4-VI 9031  
7 4H9R 2 B Histone H4 9606  
8 1S32 3 B, F Histone H4 8355  
9 4H9P 2 B Histone H4 9606  
10 1KX3 3 B, F histone H4 8355  
11 1HQ3 4 D, H HISTONE H4-VI 9031  
12 5BNX 2 B Histone H4 9606  
13 3UTA 2 B, F Histone H4 8355  
14 3UTB 2 B, F Histone H4 8355  
15 1M19 3 B, F Histone H4 8355  
16 3C1B 2 B, F Histone H4 8355  
17 2NQB 3 B, F Histone H4 7227  
18 3UT9 2 B, F Histone H4 8355  
19 3R45 2 B Histone H4 9606  
20 4WU8 4 B, F Histone H4 8355  
21 1P3I 3 B, F Histone H4 8355  
22 3MGR 2 B, F Histone H4 8355  
23 1F66 3 B, F HISTONE H4 10090  
24 3AZG 2 B, F Histone H4 9606  
25 1M18 3 B, F Histone H4 8355  
26 2PYO 4 B, F Histone H4 7227  
27 1P3L 3 B, F Histone H4 8355  
28 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031  
29 2CV5 3 B, F Histone H4 9606  
30 3MGP 2 B, F Histone H4 8355  
31 3MVD 2 B, F Histone H4 8355  
32 4J8U 2 B, F Histone H4 8355  
33 4WU9 2 B, F Histone H4 8355  
34 2YFW 2 B, D, F, H HISTONE H4 284590  
35 3REH 2 B, F Histone H4 8355  
36 3AZL 2 B, F Histone H4 9606  
37 3NQU 2 B Histone H4 9606  
38 5BNV 2 B, E Histone H4 9606  
39 3AFA 2 B, F Histone H4 9606  
40 3REJ 2 B, F Histone H4 8355  
41 3AZF 2 B, F Histone H4 9606  
42 1P3P 3 B, F Histone H4 8355  
43 3AV1 2 B, F Histone H4 9606  
44 1M1A 3 B, F Histone H4 8355  
45 3MNN 2 B, F Histone H4 8355  
46 5BO0 2 B Histone H4 9606  
47 1P3G 3 B, F Histone H4 8355  
48 4J8W 2 B, F Histone H4 8355  
49 1P34 3 B, F Histone H4 8355  
50 4HGA 3 C Histone H4 9606  
51 4UUZ 2 B HISTONE H4 7227  
52 3MGQ 2 B, F Histone H4 8355  
53 3WTP 2 B, F Histone H4 9606  
54 2NZD 4 B, F Histone H4 8355  
55 3A6N 2 B, F Histone H4 9606  
56 3LJA 2 B, F Histone H4 8355  
57 3AZI 2 B, F Histone H4 9606  
58 3TU4 2 B, F Histone H4 8355  
59 1P3O 3 B, F Histone H4 8355  
60 1KX4 3 B, F histone H4 8355  
61 3AZN 2 B, F Histone H4 9606  
62 1P3M 3 B, F Histone H4 8355  
63 4J8V 2 B, F Histone H4 8355  
64 3LZ0 2 B, F Histone H4 8355  
65 1P3F 3 B, F Histone H4 8355  
66 1P3K 3 B, F Histone H4 8355  
67 1P3A 3 B, F Histone H4 8355  
68 3LZ1 2 B, F Histone H4 8355  
69 2IO5 3 C Histone H4 8355  
70 2F8N 3 B, F Histone H4 8355  
71 1U35 3 B, F Hist1h4i protein 10090  
72 3AV2 2 B, F Histone H4 9606  
73 3AYW 2 B, F Histone H4 9606  
74 3AZJ 2 B, F Histone H4 9606  
75 3REK 2 B, F Histone H4 8355  
76 4KGC 2 B, F Histone H4 8355  
77 1ZLA 3 B, F Histone H4 8355  
78 3REL 2 B, F Histone H4 8355  
79 3REI 2 B, F Histone H4 8355  
80 1P3B 3 B, F Histone H4 8355  
81 3WKJ 2 B, F Histone H4 9606  
82 4KUD 2 B, F Histone H4 559292  
83 3AZK 2 B, F Histone H4 9606  
84 4J8X 2 B, F Histone H4 8355  
85 3LEL 2 B, F, L, P Histone H4 8355  
86 3KUY 2 B, F Histone H4 8355  
87 4R8P 2 B, F Histone H4 8355  
88 3AZM 2 B, F Histone H4 9606  
89 3MGS 2 B, F Histone H4 8355  
90 3WA9 2 B, F Histone H4 9606  
91 1ID3 3 B, F HISTONE H4 4932  
92 3C1C 2 B, F Histone H4 8355  
93 3AZH 2 B, F Histone H4 9606  
94 3WAA 2 B, F Histone H4 9606  
95 4JJN 2 B, F Histone H4 559292  
96 3AZE 2 B, F Histone H4 9606  
97 3W96 2 B, F Histone H4 9606  
98 5BS7 2 C, D Histone H4 8355  
99 5C3I 3 C, G, K, O, S, W Histone H4 9606  
100 2HIO 4 D PROTEIN (HISTONE H4) 9031  
101 4QLC 4 B, F Histone H4 7227  
102 4LD9 2 B, F Histone H4 8355  
103 3O62 2 B, F Histone H4 8355  
104 3W97 2 B, F Histone H4 9606  
105 2FJ7 4 B, F Histone H4 8355  
106 3W98 2 B, F Histone H4 9606  
107 3AN2 2 B, F Histone H4 9606  
108 5BSA 2 C, D Histone H4 8355  
109 3B6F 4 B, F Histone H4 8355  
110 3B6G 4 B, F Histone H4 8355  
111 3KXB 2 B, F Histone H4 8355  
112 1ZBB 4 B, F, b, f Histone H4 8355  
113 3C9K 4 D, H Histone H4 9031  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 866
95% 35 102 121
90% 35 105 126
70% 35 105 141
50% 36 108 163
40% 36 108 183
30% 36 108 197
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 92 95
95% 38 109 113
90% 39 113 97
70% 39 113 117
50% 39 113 152
40% 39 113 169
30% 39 113 186
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 623
95% 26 88 136
90% 29 95 132
70% 29 98 146
50% 31 104 164
40% 31 104 184
30% 31 104 198
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 687
95% 27 88 137
90% 27 90 146
70% 29 97 153
50% 29 97 182
40% 29 97 197
30% 29 97 215
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.