Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 323
95 % 51 143 90
90 % 51 146 83
70 % 51 147 101
50 % 52 150 136
40 % 52 150 152
30 % 52 150 169
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 134 78
95 % 55 153 72
90 % 56 158 73
70 % 56 158 88
50 % 56 158 127
40 % 56 158 142
30 % 56 158 158
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 50 254
95 % 43 129 112
90 % 46 140 84
70 % 48 146 93
50 % 53 156 121
40 % 53 156 139
30 % 53 156 155
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 294
95 % 43 128 114
90 % 43 133 113
70 % 46 140 119
50 % 46 140 147
40 % 46 140 162
30 % 46 140 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5B31 2 B, F Histone H4 9606
19 5B1L 2 B, F Histone H4 10090
20 3UTB 2 B, F Histone H4 8355
21 1M19 3 B, F Histone H4 8355
22 5AVB 2 B, F Histone H4 9606
23 5AVC 2 B, F Histone H4 9606
24 5AV5 2 B, F Histone H4 9606
25 3C1B 2 B, F Histone H4 8355
26 5B1M 2 B, F Histone H4 10090
27 2NQB 3 B, F Histone H4 7227
28 5JA4 2 B Histone H4 9606
29 5F99 2 B, F Histone H4 8355
30 5JRG 2 B, F Histone H4 9606
31 3UT9 2 B, F Histone H4 8355
32 5B32 2 B, F Histone H4 9606
33 3R45 2 B Histone H4 9606
34 4WU8 4 B, F Histone H4 8355
35 1P3I 3 B, F Histone H4 8355
36 3MGR 2 B, F Histone H4 8355
37 1F66 3 B, F HISTONE H4 10090
38 3AZG 2 B, F Histone H4 9606
39 1M18 3 B, F Histone H4 8355
40 5B2J 2 B, F Histone H4 9606
41 2PYO 4 B, F Histone H4 7227
42 1P3L 3 B, F Histone H4 8355
43 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
44 5B0Y 2 B, F Histone H4 9606
45 2CV5 3 B, F Histone H4 9606
46 5CP6 4 B, F Histone H4 8355
47 3MGP 2 B, F Histone H4 8355
48 3MVD 2 B, F Histone H4 8355
49 4J8U 2 B, F Histone H4 8355
50 4WU9 2 B, F Histone H4 8355
51 2YFW 2 B, D, F, H HISTONE H4 28985
52 3REH 2 B, F Histone H4 8355
53 3AZL 2 B, F Histone H4 9606
54 3NQU 2 B Histone H4 9606
55 5BNV 2 B, E Histone H4 9606
56 3AFA 2 B, F Histone H4 9606
57 5E5A 3 B, F Histone H4 8355
58 3REJ 2 B, F Histone H4 8355
59 3AZF 2 B, F Histone H4 9606
60 1P3P 3 B, F Histone H4 8355
61 3AV1 2 B, F Histone H4 9606
62 1M1A 3 B, F Histone H4 8355
63 5CPK 2 B, F Histone H4 9606
64 5AY8 2 B, F Histone H4 9606
65 3MNN 2 B, F Histone H4 8355
66 5BO0 2 B Histone H4 9606
67 1P3G 3 B, F Histone H4 8355
68 4J8W 2 B, F Histone H4 8355
69 1P34 3 B, F Histone H4 8355
70 3X1V 3 B, F Histone H4 9606
71 5DNM 2 B, F Histone H4 8355
72 4HGA 3 C Histone H4 9606
73 4UUZ 2 B HISTONE H4 7227
74 3MGQ 2 B, F Histone H4 8355
75 3WTP 2 B, F Histone H4 9606
76 3X1T 3 B, F Histone H4 9606
77 2NZD 4 B, F Histone H4 8355
78 3A6N 2 B, F Histone H4 9606
79 5DNN 2 B, F Histone H4 8355
80 5GT3 2 B, F Histone H4 9606
81 5GT0 2 B, F Histone H4 9606
82 3LJA 2 B, F Histone H4 8355
83 3AZI 2 B, F Histone H4 9606
84 3TU4 2 B, F Histone H4 8355
85 1P3O 3 B, F Histone H4 8355
86 4Z2M 3 H, J Histone H4 9606
87 1KX4 3 B, F histone H4 8355
88 3AZN 2 B, F Histone H4 9606
89 1P3M 3 B, F Histone H4 8355
90 4J8V 2 B, F Histone H4 8355
91 5B33 2 B, F Histone H4 9606
92 3X1S 2 B, F Histone H4 9606
93 3LZ0 2 B, F Histone H4 8355
94 1P3F 3 B, F Histone H4 8355
95 1P3K 3 B, F Histone H4 8355
96 4XYI 2 B Histone H4 4897
97 5B2I 2 B, F Histone H4 9606
98 1P3A 3 B, F Histone H4 8355
99 3LZ1 2 B, F Histone H4 8355
100 2IO5 3 C Histone H4 8355
101 2F8N 3 B, F Histone H4 8355
102 4Z5T 2 B, F Histone H4 9606
103 1U35 3 B, F Hist1h4i protein 10090
104 3AV2 2 B, F Histone H4 9606
105 3AYW 2 B, F Histone H4 9606
106 3AZJ 2 B, F Histone H4 9606
107 3REK 2 B, F Histone H4 8355
108 4KGC 2 B, F Histone H4 8355
109 1ZLA 3 B, F Histone H4 8355
110 5GSU 2 B, F Histone H4 9606
111 3REL 2 B, F Histone H4 8355
112 3REI 2 B, F Histone H4 8355
113 1P3B 3 B, F Histone H4 8355
114 3WKJ 2 B, F Histone H4 9606
115 4KUD 2 B, F Histone H4 4932
116 3AZK 2 B, F Histone H4 9606
117 4J8X 2 B, F Histone H4 8355
118 3LEL 2 B, F, L, P Histone H4 8355
119 3KUY 2 B, F Histone H4 8355
120 4R8P 2 B, F Histone H4 8355
121 3AZM 2 B, F Histone H4 9606
122 3X1U 3 B, F Histone H4 9606
123 3MGS 2 B, F Histone H4 8355
124 3WA9 2 B, F Histone H4 9606
125 1ID3 3 B, F HISTONE H4 4932
126 3C1C 2 B, F Histone H4 8355
127 3AZH 2 B, F Histone H4 9606
128 5B40 2 B, F Histone H4 9606
129 3WAA 2 B, F Histone H4 9606
130 5CPI 2 B, F Histone H4 9606
131 4JJN 2 B, F Histone H4 4932
132 3AZE 2 B, F Histone H4 9606
133 3W96 2 B, F Histone H4 9606
134 5CPJ 2 B, F Histone H4 9606
135 5B24 2 B, F Histone H4 9606
136 5BS7 2 C, D Histone H4 8355
137 5C3I 3 C, G, K, O, S, W Histone H4 9606
138 2HIO 4 D PROTEIN (HISTONE H4) 9031
139 4QLC 4 B, F Histone H4 7227
140 4LD9 2 B, F Histone H4 8355
141 3O62 2 B, F Histone H4 8355
142 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
143 5KDM 2 B Histone H4 9606
144 3W97 2 B, F Histone H4 9606
145 4YM5 2 B, F Histone H4 9606
146 4YM6 2 B, F Histone H4 9606
147 2FJ7 4 B, F Histone H4 8355
148 3W98 2 B, F Histone H4 9606
149 4ZUX 2 B, F, L, P Histone H4 8355
150 3AN2 2 B, F Histone H4 9606
151 5BSA 2 C, D Histone H4 8355
152 3B6F 4 B, F Histone H4 8355
153 3B6G 4 B, F Histone H4 8355
154 3KXB 2 B, F Histone H4 8355
155 5HQ2 2 B Histone H4 8355
156 1ZBB 4 B, F, b, f Histone H4 8355
157 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
158 3C9K 4 D, H Histone H4 9031