Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 41 301
95 % 52 149 76
90 % 52 152 78
70 % 52 153 96
50 % 53 156 131
40 % 53 156 145
30 % 53 156 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 140 75
95 % 56 159 73
90 % 57 164 74
70 % 57 164 87
50 % 57 164 122
40 % 57 164 139
30 % 57 164 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 53 245
95 % 45 139 86
90 % 47 147 80
70 % 49 153 88
50 % 54 163 117
40 % 54 163 138
30 % 54 163 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 264
95 % 44 134 111
90 % 44 139 108
70 % 47 146 104
50 % 47 146 140
40 % 47 146 155
30 % 47 146 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5X7X 2 B, F Histone H4 9606
19 5B31 2 B, F Histone H4 9606
20 5B1L 2 B, F Histone H4 10090
21 3UTB 2 B, F Histone H4 8355
22 1M19 3 B, F Histone H4 8355
23 5AVB 2 B, F Histone H4 9606
24 5AVC 2 B, F Histone H4 9606
25 5AV5 2 B, F Histone H4 9606
26 3C1B 2 B, F Histone H4 8355
27 5B1M 2 B, F Histone H4 10090
28 2NQB 3 B, F Histone H4 7227
29 5JA4 2 B Histone H4 9606
30 5F99 2 B, F Histone H4 8355
31 5JRG 2 B, F Histone H4 9606
32 3UT9 2 B, F Histone H4 8355
33 5B32 2 B, F Histone H4 9606
34 3R45 2 B Histone H4 9606
35 4WU8 4 B, F Histone H4 8355
36 1P3I 3 B, F Histone H4 8355
37 3MGR 2 B, F Histone H4 8355
38 1F66 3 B, F HISTONE H4 10090
39 3AZG 2 B, F Histone H4 9606
40 1M18 3 B, F Histone H4 8355
41 5B2J 2 B, F Histone H4 9606
42 2PYO 4 B, F Histone H4 7227
43 1P3L 3 B, F Histone H4 8355
44 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
45 5B0Y 2 B, F Histone H4 9606
46 2CV5 3 B, F Histone H4 9606
47 5CP6 4 B, F Histone H4 8355
48 3MGP 2 B, F Histone H4 8355
49 3MVD 2 B, F Histone H4 8355
50 4J8U 2 B, F Histone H4 8355
51 4WU9 2 B, F Histone H4 8355
52 2YFW 2 B, D, F, H HISTONE H4 28985
53 3REH 2 B, F Histone H4 8355
54 3AZL 2 B, F Histone H4 9606
55 3NQU 2 B Histone H4 9606
56 5BNV 2 B, E Histone H4 9606
57 3AFA 2 B, F Histone H4 9606
58 5E5A 3 B, F Histone H4 8355
59 3REJ 2 B, F Histone H4 8355
60 3AZF 2 B, F Histone H4 9606
61 1P3P 3 B, F Histone H4 8355
62 3AV1 2 B, F Histone H4 9606
63 1M1A 3 B, F Histone H4 8355
64 5CPK 2 B, F Histone H4 9606
65 5AY8 2 B, F Histone H4 9606
66 3MNN 2 B, F Histone H4 8355
67 5BO0 2 B Histone H4 9606
68 1P3G 3 B, F Histone H4 8355
69 4J8W 2 B, F Histone H4 8355
70 1P34 3 B, F Histone H4 8355
71 3X1V 3 B, F Histone H4 9606
72 5DNM 2 B, F Histone H4 8355
73 4HGA 3 C Histone H4 9606
74 4UUZ 2 B HISTONE H4 7227
75 3MGQ 2 B, F Histone H4 8355
76 3WTP 2 B, F Histone H4 9606
77 3X1T 3 B, F Histone H4 9606
78 2NZD 4 B, F Histone H4 8355
79 3A6N 2 B, F Histone H4 9606
80 5DNN 2 B, F Histone H4 8355
81 5GT3 2 B, F Histone H4 9606
82 5GT0 2 B, F Histone H4 9606
83 3LJA 2 B, F Histone H4 8355
84 3AZI 2 B, F Histone H4 9606
85 3TU4 2 B, F Histone H4 8355
86 1P3O 3 B, F Histone H4 8355
87 4Z2M 3 H, J Histone H4 9606
88 1KX4 3 B, F histone H4 8355
89 3AZN 2 B, F Histone H4 9606
90 1P3M 3 B, F Histone H4 8355
91 4J8V 2 B, F Histone H4 8355
92 5B33 2 B, F Histone H4 9606
93 3X1S 2 B, F Histone H4 9606
94 3LZ0 2 B, F Histone H4 8355
95 1P3F 3 B, F Histone H4 8355
96 1P3K 3 B, F Histone H4 8355
97 4XYI 2 B Histone H4 4897
98 5B2I 2 B, F Histone H4 9606
99 1P3A 3 B, F Histone H4 8355
100 3LZ1 2 B, F Histone H4 8355
101 2IO5 3 C Histone H4 8355
102 5GXQ 2 B, F Histone H4 9606
103 2F8N 3 B, F Histone H4 8355
104 4Z5T 2 B, F Histone H4 9606
105 1U35 3 B, F Hist1h4i protein 10090
106 3AV2 2 B, F Histone H4 9606
107 3AYW 2 B, F Histone H4 9606
108 3AZJ 2 B, F Histone H4 9606
109 3REK 2 B, F Histone H4 8355
110 4KGC 2 B, F Histone H4 8355
111 1ZLA 3 B, F Histone H4 8355
112 5GSU 2 B, F Histone H4 9606
113 3REL 2 B, F Histone H4 8355
114 5GSE 2 B, F, L, P Histone H4 9606
115 3REI 2 B, F Histone H4 8355
116 1P3B 3 B, F Histone H4 8355
117 3WKJ 2 B, F Histone H4 9606
118 4KUD 2 B, F Histone H4 4932
119 3AZK 2 B, F Histone H4 9606
120 4J8X 2 B, F Histone H4 8355
121 3LEL 2 B, F, L, P Histone H4 8355
122 3KUY 2 B, F Histone H4 8355
123 4R8P 2 B, F Histone H4 8355
124 3AZM 2 B, F Histone H4 9606
125 3X1U 3 B, F Histone H4 9606
126 3MGS 2 B, F Histone H4 8355
127 3WA9 2 B, F Histone H4 9606
128 1ID3 3 B, F HISTONE H4 4932
129 3C1C 2 B, F Histone H4 8355
130 3AZH 2 B, F Histone H4 9606
131 5B40 2 B, F Histone H4 9606
132 3WAA 2 B, F Histone H4 9606
133 5CPI 2 B, F Histone H4 9606
134 4JJN 2 B, F Histone H4 4932
135 3AZE 2 B, F Histone H4 9606
136 3W96 2 B, F Histone H4 9606
137 5CPJ 2 B, F Histone H4 9606
138 5B24 2 B, F Histone H4 9606
139 5BS7 2 C, D Histone H4 8355
140 5C3I 3 C, G, K, O, S, W Histone H4 9606
141 2HIO 4 D PROTEIN (HISTONE H4) 9031
142 4QLC 4 B, F Histone H4 7227
143 4LD9 2 B, F Histone H4 8355
144 3O62 2 B, F Histone H4 8355
145 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
146 5KDM 2 B Histone H4 9606
147 3W97 2 B, F Histone H4 9606
148 4YM5 2 B, F Histone H4 9606
149 4YM6 2 B, F Histone H4 9606
150 2FJ7 4 B, F Histone H4 8355
151 3W98 2 B, F Histone H4 9606
152 4ZUX 2 B, F, L, P Histone H4 8355
153 3AN2 2 B, F Histone H4 9606
154 5BSA 2 C, D Histone H4 8355
155 3B6F 4 B, F Histone H4 8355
156 3B6G 4 B, F Histone H4 8355
157 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
158 3KXB 2 B, F Histone H4 8355
159 5HQ2 2 B Histone H4 8355
160 1ZBB 4 B, F, b, f Histone H4 8355
161 5X0X 2 B, F Histone H4 8355
162 5X0Y 2 B, F Histone H4 8355
163 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
164 3C9K 4 D, H Histone H4 9031