Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 346
95 % 48 137 105
90 % 48 140 105
70 % 48 141 116
50 % 49 144 139
40 % 49 144 156
30 % 49 144 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 128 85
95 % 52 147 77
90 % 53 152 74
70 % 53 152 89
50 % 53 152 127
40 % 53 152 146
30 % 53 152 160
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 47 252
95 % 40 125 111
90 % 43 134 107
70 % 45 140 97
50 % 50 150 123
40 % 50 150 140
30 % 50 150 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 273
95 % 40 124 115
90 % 40 127 116
70 % 43 134 123
50 % 43 134 151
40 % 43 134 167
30 % 43 134 183
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 4H9R 1 A Histone H3.3 9606
9 1S32 2 A, E histone H3 8355
10 4H9P 1 A Histone H3.3 9606
11 5AV8 1 A, E Histone H3.1 9606
12 1KX3 2 A, E histone H3 8355
13 5AV9 1 A, E Histone H3.1 9606
14 5AV6 1 A, E Histone H3.1 9606
15 1HQ3 3 C, G HISTONE H3 9031
16 3UTA 1 A, E Histone H3.2 8355
17 5B31 1 A, E Histone H3.1 9606
18 3UTB 1 A, E Histone H3.2 8355
19 1M19 2 A, E Histone H3.2 8355
20 5AVB 1 A, E Histone H3.1 9606
21 5AVC 1 A, E Histone H3.1 9606
22 5AV5 1 A, E Histone H3.1 9606
23 3C1B 1 A, E Histone H3-like 8355
24 2NQB 2 A, E Histone H3 7227
25 5F99 1 A, E Histone H3.2 8355
26 3UT9 1 A, E Histone H3.2 8355
27 5B32 1 A, E Histone H3.3 9606
28 4WU8 3 A, E Histone H3.2 8355
29 1P3I 2 A, E Histone H3 8355
30 3MGR 1 A, E Histone H3.2 8355
31 1F66 2 A, E HISTONE H3 8355
32 3AZG 1 A, E Histone H3.1 9606
33 4H9S 1 A, B Histone H3.3 9606
34 1M18 2 A, E Histone H3.2 8355
35 5B2J 1 A, E Histone H3.1 9606
36 2PYO 3 A, E Histone H3 7227
37 1P3L 2 A, E Histone H3 8355
38 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
39 5B0Y 1 A, E Histone H3.2 9606
40 2CV5 2 A, E Histone H3.1 9606
41 5CP6 3 A, E Histone H3.2 8355
42 3MGP 1 A, E Histone H3.2 8355
43 3MVD 1 A, E Histone H3.2 8355
44 4J8U 1 A, E Histone H3.2 8355
45 4WU9 1 A, E Histone H3.2 8355
46 3REH 1 A, E Histone H3.2 8355
47 3AZL 1 A, E Histone H3.1 9606
48 3AFA 1 A, E Histone H3.1 9606
49 5E5A 2 A, E Histone H3.2 8355
50 3REJ 1 A, E Histone H3.2 8355
51 3AZF 1 A, E Histone H3.1 9606
52 1P3P 2 A, E Histone H3 8355
53 3AV1 1 A, E Histone H3.2 9606
54 1M1A 2 A, E Histone H3.2 8355
55 5CPK 1 A, E Histone H3.1 9606
56 3MNN 1 A, E Histone H3.2 8355
57 1P3G 2 A, E Histone H3 8355
58 4J8W 1 A, E Histone H3.2 8355
59 1P34 2 A, E Histone H3 8355
60 3X1V 2 A, E Histone H3.1 9606
61 5DNM 1 A, E Histone H3.2 8355
62 4HGA 2 B Histone H3.3 9606
63 4UUZ 1 A HISTONE H3 7227
64 3MGQ 1 A, E Histone H3.2 8355
65 3WTP 5 E Histone H3.3 9606
66 3X1T 2 A, E Histone H3.1 9606
67 2NZD 3 A, E Histone H3 8355
68 3A6N 1 A, E Histone H3.1t 9606
69 5DNN 1 A, E Histone H3.2 8355
70 3LJA 1 A, E Histone H3.2 8355
71 3AZI 1 A, E Histone H3.1 9606
72 3TU4 1 A, E Histone H3.2 8355
73 1P3O 2 A, E Histone H3 8355
74 1KX4 2 A, E histone H3 8355
75 3AZN 1 A, E Histone H3.1 9606
76 1P3M 2 A, E Histone H3 8355
77 4J8V 1 A, E Histone H3.2 8355
78 5B33 1 A, E Histone H3.3 9606
79 3X1S 1 A, E Histone H3.1 9606
80 3LZ0 1 A, E Histone H3.2 8355
81 1P3F 2 A, E Histone H3 8355
82 1P3K 2 A, E Histone H3 8355
83 5B2I 1 A, E Histone H3.1 9606
84 1P3A 2 A, E Histone H3 8355
85 3LZ1 1 A, E Histone H3.2 8355
86 2IO5 2 B Histone H3.1 8355
87 2F8N 2 A, E Histone H3.1 8355
88 4Z5T 1 A, E Histone H3.3C 9606
89 1U35 2 A, E Histone H3.1 10090
90 3AV2 1 A, E Histone H3.3 9606
91 3AYW 1 A, E Histone H3.1 9606
92 3AZJ 1 A, E Histone H3.1 9606
93 3REK 1 A, E Histone H3.2 8355
94 4KGC 1 A, E Histone H3.2 8355
95 1ZLA 2 A, E histone H3 8355
96 3REL 1 A, E Histone H3.2 8355
97 3REI 1 A, E Histone H3.2 8355
98 1P3B 2 A, E Histone H3 8355
99 3WKJ 1 A, E Histone H3.1 9606
100 4KUD 1 A, E Histone H3 4932
101 3AZK 1 A, E Histone H3.1 9606
102 4J8X 1 A, E Histone H3.2 8355
103 3LEL 1 A, E, K, O Histone H3.2 8355
104 3KUY 1 A, E Histone H3.2 8355
105 4R8P 1 A, E Histone H3.2 8355
106 3AZM 1 A, E Histone H3.1 9606
107 3X1U 2 A, E Histone H3.1 9606
108 3MGS 1 A, E Histone H3.2 8355
109 3WA9 1 A, E Histone H3.1 9606
110 1ID3 2 A, E HISTONE H3 4932
111 3C1C 1 A, E Histone H3-like 8355
112 3AZH 1 A, E Histone H3.1 9606
113 5B40 1 A, E Histone H3.2 9606
114 3WAA 1 A, E Histone H3.1 9606
115 5CPI 1 A, E Histone H3.1 9606
116 4JJN 1 A, E Histone H3 4932
117 3W99 1 A, E Histone H3.1 9606
118 3AZE 1 A, E Histone H3.1 9606
119 3W96 1 A, E Histone H3.1 9606
120 5CPJ 1 A, E Histone H3.1 9606
121 5B24 1 A, E Histone H3.1 9606
122 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
123 2HIO 3 C PROTEIN (HISTONE H3) 9031
124 4QLC 3 A, E Histone H3 7227
125 4LD9 1 A, E Histone H3.2 8355
126 3O62 1 A, E Histone H3.2 8355
127 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
128 5KDM 1 A Histone H3.3 9606
129 3W97 1 A, E Histone H3.1 9606
130 4YM5 1 A, E Histone H3.1 9606
131 4YM6 1 A, E Histone H3.1 9606
132 2FJ7 3 A, E histone H3 8355
133 4ZUX 1 A, E, K, O Histone H3.2 8355
134 3B6F 3 A, E Histone H3.2 8355
135 3B6G 3 A, E Histone H3.2 8355
136 3KXB 1 A, E Histone H3.2 8355
137 5HQ2 1 A Histone H3.2 8355
138 1ZBB 3 A, E, a, e HISTONE H3 8355
139 5KGF 1 A, E Histone H3.2 8355
140 3C9K 3 C, G Histone H3.2 9031