Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 103
90 % 44 129 103
70 % 44 130 116
50 % 45 133 142
40 % 45 133 156
30 % 45 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 85
95 % 47 135 78
90 % 48 140 78
70 % 48 140 92
50 % 48 140 130
40 % 48 140 144
30 % 48 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 112
90 % 39 123 106
70 % 40 127 106
50 % 43 134 129
40 % 43 134 143
30 % 43 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 116
90 % 36 116 117
70 % 38 122 128
50 % 38 122 155
40 % 38 122 169
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 4H9R 1 A Histone H3.3 9606
9 1S32 2 A, E histone H3 8355
10 4H9P 1 A Histone H3.3 9606
11 5AV8 1 A, E Histone H3.1 9606
12 1KX3 2 A, E histone H3 8355
13 5AV9 1 A, E Histone H3.1 9606
14 5AV6 1 A, E Histone H3.1 9606
15 1HQ3 3 C, G HISTONE H3 9031
16 3UTA 1 A, E Histone H3.2 8355
17 3UTB 1 A, E Histone H3.2 8355
18 1M19 2 A, E Histone H3.2 8355
19 5AVB 1 A, E Histone H3.1 9606
20 5AVC 1 A, E Histone H3.1 9606
21 5AV5 1 A, E Histone H3.1 9606
22 3C1B 1 A, E Histone H3-like 8355
23 2NQB 2 A, E Histone H3 7227
24 5F99 1 A, E Histone H3.2 8355
25 3UT9 1 A, E Histone H3.2 8355
26 4WU8 3 A, E Histone H3.2 8355
27 1P3I 2 A, E Histone H3 8355
28 3MGR 1 A, E Histone H3.2 8355
29 1F66 2 A, E HISTONE H3 8355
30 3AZG 1 A, E Histone H3.1 9606
31 4H9S 1 A, B Histone H3.3 9606
32 1M18 2 A, E Histone H3.2 8355
33 2PYO 3 A, E Histone H3 7227
34 1P3L 2 A, E Histone H3 8355
35 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
36 5B0Y 1 A, E Histone H3.2 9606
37 2CV5 2 A, E Histone H3.1 9606
38 3MGP 1 A, E Histone H3.2 8355
39 3MVD 1 A, E Histone H3.2 8355
40 4J8U 1 A, E Histone H3.2 8355
41 4WU9 1 A, E Histone H3.2 8355
42 3REH 1 A, E Histone H3.2 8355
43 3AZL 1 A, E Histone H3.1 9606
44 3AFA 1 A, E Histone H3.1 9606
45 5E5A 2 A, E Histone H3.2 8355
46 3REJ 1 A, E Histone H3.2 8355
47 3AZF 1 A, E Histone H3.1 9606
48 1P3P 2 A, E Histone H3 8355
49 3AV1 1 A, E Histone H3.2 9606
50 1M1A 2 A, E Histone H3.2 8355
51 5CPK 1 A, E Histone H3.1 9606
52 3MNN 1 A, E Histone H3.2 8355
53 1P3G 2 A, E Histone H3 8355
54 4J8W 1 A, E Histone H3.2 8355
55 1P34 2 A, E Histone H3 8355
56 3X1V 2 A, E Histone H3.1 9606
57 4HGA 2 B Histone H3.3 9606
58 4UUZ 1 A HISTONE H3 7227
59 3MGQ 1 A, E Histone H3.2 8355
60 3WTP 5 E Histone H3.3 9606
61 3X1T 2 A, E Histone H3.1 9606
62 2NZD 3 A, E Histone H3 8355
63 3A6N 1 A, E Histone H3.1t 9606
64 3LJA 1 A, E Histone H3.2 8355
65 3AZI 1 A, E Histone H3.1 9606
66 3TU4 1 A, E Histone H3.2 8355
67 1P3O 2 A, E Histone H3 8355
68 1KX4 2 A, E histone H3 8355
69 3AZN 1 A, E Histone H3.1 9606
70 1P3M 2 A, E Histone H3 8355
71 4J8V 1 A, E Histone H3.2 8355
72 3X1S 1 A, E Histone H3.1 9606
73 3LZ0 1 A, E Histone H3.2 8355
74 1P3F 2 A, E Histone H3 8355
75 1P3K 2 A, E Histone H3 8355
76 1P3A 2 A, E Histone H3 8355
77 3LZ1 1 A, E Histone H3.2 8355
78 2IO5 2 B Histone H3.1 8355
79 2F8N 2 A, E Histone H3.1 8355
80 4Z5T 1 A, E Histone H3.3C 9606
81 1U35 2 A, E Histone H3.1 10090
82 3AV2 1 A, E Histone H3.3 9606
83 3AYW 1 A, E Histone H3.1 9606
84 3AZJ 1 A, E Histone H3.1 9606
85 3REK 1 A, E Histone H3.2 8355
86 4KGC 1 A, E Histone H3.2 8355
87 1ZLA 2 A, E histone H3 8355
88 3REL 1 A, E Histone H3.2 8355
89 3REI 1 A, E Histone H3.2 8355
90 1P3B 2 A, E Histone H3 8355
91 3WKJ 1 A, E Histone H3.1 9606
92 4KUD 1 A, E Histone H3 4932
93 3AZK 1 A, E Histone H3.1 9606
94 4J8X 1 A, E Histone H3.2 8355
95 3LEL 1 A, E, K, O Histone H3.2 8355
96 3KUY 1 A, E Histone H3.2 8355
97 4R8P 1 A, E Histone H3.2 8355
98 3AZM 1 A, E Histone H3.1 9606
99 3X1U 2 A, E Histone H3.1 9606
100 3MGS 1 A, E Histone H3.2 8355
101 3WA9 1 A, E Histone H3.1 9606
102 1ID3 2 A, E HISTONE H3 4932
103 3C1C 1 A, E Histone H3-like 8355
104 3AZH 1 A, E Histone H3.1 9606
105 3WAA 1 A, E Histone H3.1 9606
106 5CPI 1 A, E Histone H3.1 9606
107 4JJN 1 A, E Histone H3 4932
108 3W99 1 A, E Histone H3.1 9606
109 3AZE 1 A, E Histone H3.1 9606
110 3W96 1 A, E Histone H3.1 9606
111 5CPJ 1 A, E Histone H3.1 9606
112 5B24 1 A, E Histone H3.1 9606
113 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
114 2HIO 3 C PROTEIN (HISTONE H3) 9031
115 4QLC 3 A, E Histone H3 7227
116 4LD9 1 A, E Histone H3.2 8355
117 3O62 1 A, E Histone H3.2 8355
118 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
119 3W97 1 A, E Histone H3.1 9606
120 4YM5 1 A, E Histone H3.1 9606
121 4YM6 1 A, E Histone H3.1 9606
122 2FJ7 3 A, E histone H3 8355
123 4ZUX 1 A, E, K, O Histone H3.2 8355
124 3B6F 3 A, E Histone H3.2 8355
125 3B6G 3 A, E Histone H3.2 8355
126 3KXB 1 A, E Histone H3.2 8355
127 5HQ2 1 A Histone H3.2 8355
128 1ZBB 3 A, E, a, e HISTONE H3 8355
129 3C9K 3 C, G Histone H3.2 9031