Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 337
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 156
30 % 47 137 178
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 85
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 145
30 % 51 145 164
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 113
90 % 41 128 108
70 % 42 132 113
50 % 45 139 128
40 % 45 139 144
30 % 45 139 163
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 116
90 % 38 121 119
70 % 40 127 125
50 % 40 127 153
40 % 40 127 171
30 % 40 127 187
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 4H9R 1 A Histone H3.3 9606
9 1S32 2 A, E histone H3 8355
10 4H9P 1 A Histone H3.3 9606
11 5AV8 1 A, E Histone H3.1 9606
12 1KX3 2 A, E histone H3 8355
13 5AV9 1 A, E Histone H3.1 9606
14 5AV6 1 A, E Histone H3.1 9606
15 1HQ3 3 C, G HISTONE H3 9031
16 3UTA 1 A, E Histone H3.2 8355
17 3UTB 1 A, E Histone H3.2 8355
18 1M19 2 A, E Histone H3.2 8355
19 5AVB 1 A, E Histone H3.1 9606
20 5AVC 1 A, E Histone H3.1 9606
21 5AV5 1 A, E Histone H3.1 9606
22 3C1B 1 A, E Histone H3-like 8355
23 2NQB 2 A, E Histone H3 7227
24 5F99 1 A, E Histone H3.2 8355
25 3UT9 1 A, E Histone H3.2 8355
26 4WU8 3 A, E Histone H3.2 8355
27 1P3I 2 A, E Histone H3 8355
28 3MGR 1 A, E Histone H3.2 8355
29 1F66 2 A, E HISTONE H3 8355
30 3AZG 1 A, E Histone H3.1 9606
31 4H9S 1 A, B Histone H3.3 9606
32 1M18 2 A, E Histone H3.2 8355
33 5B2J 1 A, E Histone H3.1 9606
34 2PYO 3 A, E Histone H3 7227
35 1P3L 2 A, E Histone H3 8355
36 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 1 A, E Histone H3.2 9606
38 2CV5 2 A, E Histone H3.1 9606
39 5CP6 3 A, E Histone H3.2 8355
40 3MGP 1 A, E Histone H3.2 8355
41 3MVD 1 A, E Histone H3.2 8355
42 4J8U 1 A, E Histone H3.2 8355
43 4WU9 1 A, E Histone H3.2 8355
44 3REH 1 A, E Histone H3.2 8355
45 3AZL 1 A, E Histone H3.1 9606
46 3AFA 1 A, E Histone H3.1 9606
47 5E5A 2 A, E Histone H3.2 8355
48 3REJ 1 A, E Histone H3.2 8355
49 3AZF 1 A, E Histone H3.1 9606
50 1P3P 2 A, E Histone H3 8355
51 3AV1 1 A, E Histone H3.2 9606
52 1M1A 2 A, E Histone H3.2 8355
53 5CPK 1 A, E Histone H3.1 9606
54 5AY8 1 A, E H3.Y 9606
55 3MNN 1 A, E Histone H3.2 8355
56 1P3G 2 A, E Histone H3 8355
57 4J8W 1 A, E Histone H3.2 8355
58 1P34 2 A, E Histone H3 8355
59 3X1V 2 A, E Histone H3.1 9606
60 4HGA 2 B Histone H3.3 9606
61 4UUZ 1 A HISTONE H3 7227
62 3MGQ 1 A, E Histone H3.2 8355
63 3WTP 5 E Histone H3.3 9606
64 3X1T 2 A, E Histone H3.1 9606
65 2NZD 3 A, E Histone H3 8355
66 3A6N 1 A, E Histone H3.1t 9606
67 3LJA 1 A, E Histone H3.2 8355
68 3AZI 1 A, E Histone H3.1 9606
69 3TU4 1 A, E Histone H3.2 8355
70 1P3O 2 A, E Histone H3 8355
71 1KX4 2 A, E histone H3 8355
72 3AZN 1 A, E Histone H3.1 9606
73 1P3M 2 A, E Histone H3 8355
74 4J8V 1 A, E Histone H3.2 8355
75 3X1S 1 A, E Histone H3.1 9606
76 3LZ0 1 A, E Histone H3.2 8355
77 1P3F 2 A, E Histone H3 8355
78 1P3K 2 A, E Histone H3 8355
79 5B2I 1 A, E Histone H3.1 9606
80 1P3A 2 A, E Histone H3 8355
81 3LZ1 1 A, E Histone H3.2 8355
82 2IO5 2 B Histone H3.1 8355
83 2F8N 2 A, E Histone H3.1 8355
84 4Z5T 1 A, E Histone H3.3C 9606
85 1U35 2 A, E Histone H3.1 10090
86 3AV2 1 A, E Histone H3.3 9606
87 3AYW 1 A, E Histone H3.1 9606
88 3AZJ 1 A, E Histone H3.1 9606
89 3REK 1 A, E Histone H3.2 8355
90 4KGC 1 A, E Histone H3.2 8355
91 1ZLA 2 A, E histone H3 8355
92 3REL 1 A, E Histone H3.2 8355
93 3REI 1 A, E Histone H3.2 8355
94 1P3B 2 A, E Histone H3 8355
95 3WKJ 1 A, E Histone H3.1 9606
96 4KUD 1 A, E Histone H3 4932
97 3AZK 1 A, E Histone H3.1 9606
98 4J8X 1 A, E Histone H3.2 8355
99 3LEL 1 A, E, K, O Histone H3.2 8355
100 3KUY 1 A, E Histone H3.2 8355
101 4R8P 1 A, E Histone H3.2 8355
102 3AZM 1 A, E Histone H3.1 9606
103 3X1U 2 A, E Histone H3.1 9606
104 3MGS 1 A, E Histone H3.2 8355
105 3WA9 1 A, E Histone H3.1 9606
106 1ID3 2 A, E HISTONE H3 4932
107 3C1C 1 A, E Histone H3-like 8355
108 3AZH 1 A, E Histone H3.1 9606
109 5B40 1 A, E Histone H3.2 9606
110 3WAA 1 A, E Histone H3.1 9606
111 5CPI 1 A, E Histone H3.1 9606
112 4JJN 1 A, E Histone H3 4932
113 3W99 1 A, E Histone H3.1 9606
114 3AZE 1 A, E Histone H3.1 9606
115 3W96 1 A, E Histone H3.1 9606
116 5CPJ 1 A, E Histone H3.1 9606
117 5B24 1 A, E Histone H3.1 9606
118 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
119 2HIO 3 C PROTEIN (HISTONE H3) 9031
120 4QLC 3 A, E Histone H3 7227
121 4LD9 1 A, E Histone H3.2 8355
122 3O62 1 A, E Histone H3.2 8355
123 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
124 3W97 1 A, E Histone H3.1 9606
125 4YM5 1 A, E Histone H3.1 9606
126 4YM6 1 A, E Histone H3.1 9606
127 2FJ7 3 A, E histone H3 8355
128 4ZUX 1 A, E, K, O Histone H3.2 8355
129 3B6F 3 A, E Histone H3.2 8355
130 3B6G 3 A, E Histone H3.2 8355
131 3KXB 1 A, E Histone H3.2 8355
132 5HQ2 1 A Histone H3.2 8355
133 1ZBB 3 A, E, a, e HISTONE H3 8355
134 3C9K 3 C, G Histone H3.2 9031