Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 45 310
95 % 54 160 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 54 163 77
70 % 54 164 92
50 % 55 167 125
40 % 55 167 145
30 % 55 167 156
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 151 58
95 % 58 170 71 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 59 175 69
70 % 59 175 83
50 % 59 175 116
40 % 59 175 139
30 % 59 175 144
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 57 247
95 % 47 150 81 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 49 158 79
70 % 51 164 89
50 % 56 174 111
40 % 56 174 135
30 % 56 174 141
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 52 263
95 % 46 146 85 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 46 151 85
70 % 49 158 98
50 % 49 158 136
40 % 49 158 151
30 % 49 158 161
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5AV8 1 A, E Histone H3.1 9606
2 5AV9 1 A, E Histone H3.1 9606
3 5AV6 1 A, E Histone H3.1 9606
4 5B31 1 A, E Histone H3.1 9606
5 5AVB 1 A, E Histone H3.1 9606
6 5AVC 1 A, E Histone H3.1 9606
7 5AV5 1 A, E Histone H3.1 9606
8 5B1M 1 A, E Histone H3.1 10090
9 5JRG 1 A, E Histone H3.1 9606
10 5B2J 1 A, E Histone H3.1 9606
11 2CV5 2 A, E Histone H3.1 9606
12 3AZL 1 A, E Histone H3.1 9606
13 3AFA 1 A, E Histone H3.1 9606
14 5GTC 1 A, E Histone H3.1 9606
15 5CPK 1 A, E Histone H3.1 9606
16 5XF3 1 A, E Histone H3.1 9606
17 3X1V 2 A, E Histone H3.1 9606
18 3X1T 2 A, E Histone H3.1 9606
19 5GT3 1 A, E Histone H3.1 9606
20 5GT0 1 A, E Histone H3.1 9606
21 3AZI 1 A, E Histone H3.1 9606
22 3AZN 1 A, E Histone H3.1 9606
23 3X1S 1 A, E Histone H3.1 9606
24 5B2I 1 A, E Histone H3.1 9606
25 1U35 2 A, E Histone H3.1 10090
26 5XF5 1 A, E Histone H3.1 9606
27 3AZJ 1 A, E Histone H3.1 9606
28 5GSU 1 A, E Histone H3.1 9606
29 5XF4 1 A, E Histone H3.1 9606
30 5GSE 1 A, E, K, O Histone H3.1 9606
31 3WKJ 1 A, E Histone H3.1 9606
32 3AZK 1 A, E Histone H3.1 9606
33 3AZM 1 A, E Histone H3.1 9606
34 3X1U 2 A, E Histone H3.1 9606
35 3WA9 1 A, E Histone H3.1 9606
36 3WAA 1 A, E Histone H3.1 9606
37 5CPI 1 A, E Histone H3.1 9606
38 3W99 1 A, E Histone H3.1 9606
39 3W96 1 A, E Histone H3.1 9606
40 5CPJ 1 A, E Histone H3.1 9606
41 5B24 1 A, E Histone H3.1 9606
42 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
43 3W97 1 A, E Histone H3.1 9606
44 4YM5 1 A, E Histone H3.1 9606
45 4YM6 1 A, E Histone H3.1 9606