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An Information Portal to 107049 Biological Macromolecular Structures

The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 1043 Members. Sequence cutoff: 100% Cluster size: 15 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2CV5 2 A, E Histone H3.1 9606  
2 3AZL 1 A, E Histone H3.1 9606  
3 3AFA 1 A, E Histone H3.1 9606  
4 3AZI 1 A, E Histone H3.1 9606  
5 3AZN 1 A, E Histone H3.1 9606  
6 1U35 2 A, E Histone H3.1 10090  
7 3AZJ 1 A, E Histone H3.1 9606  
8 3WKJ 1 A, E Histone H3.1 9606  
9 3AZK 1 A, E Histone H3.1 9606  
10 3AZM 1 A, E Histone H3.1 9606  
11 3WA9 1 A, E Histone H3.1 9606  
12 3WAA 1 A, E Histone H3.1 9606  
13 3W99 1 A, E Histone H3.1 9606  
14 3W96 1 A, E Histone H3.1 9606  
15 3W97 1 A, E Histone H3.1 9606  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1043
95% 33 98 97
90% 33 101 103
70% 33 101 123
50% 34 104 158
40% 34 104 180
30% 34 104 198
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 84 88
95% 34 100 95
90% 35 104 95
70% 35 104 112
50% 35 104 151
40% 35 104 175
30% 35 104 194
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 584
95% 24 86 125
90% 27 92 105
70% 27 95 124
50% 29 101 148
40% 29 101 173
30% 29 101 192
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 650
95% 25 86 127
90% 25 88 122
70% 27 94 126
50% 27 94 169
40% 27 94 191
30% 27 94 209
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.