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The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Cluster # 931 Members. Sequence cutoff: 100% Cluster size: 15 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2CV5 2 A, E Histone H3.1 9606  
2 3AZL 1 A, E Histone H3.1 9606  
3 3AFA 1 A, E Histone H3.1 9606  
4 3AZI 1 A, E Histone H3.1 9606  
5 3AZN 1 A, E Histone H3.1 9606  
6 1U35 2 A, E Histone H3.1 10090  
7 3AZJ 1 A, E Histone H3.1 9606  
8 3WKJ 1 A, E Histone H3.1 9606  
9 3AZK 1 A, E Histone H3.1 9606  
10 3AZM 1 A, E Histone H3.1 9606  
11 3WA9 1 A, E Histone H3.1 9606  
12 3WAA 1 A, E Histone H3.1 9606  
13 3W99 1 A, E Histone H3.1 9606  
14 3W96 1 A, E Histone H3.1 9606  
15 3W97 1 A, E Histone H3.1 9606  
 
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 931
95% 33 95 82
90% 33 98 85
70% 33 98 105
50% 34 100 139
40% 34 100 168
30% 34 100 191
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 82 57
95% 34 97 79
90% 35 101 80
70% 35 101 100
50% 35 101 134
40% 35 101 163
30% 35 101 187
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 546
95% 24 84 86
90% 27 90 91
70% 27 93 106
50% 29 99 131
40% 29 99 159
30% 29 99 183
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 583
95% 25 84 88
90% 25 86 96
70% 27 92 109
50% 27 92 146
40% 27 92 174
30% 27 92 197
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.