Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 452
95 % 54 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 54 171 79
70 % 54 172 95
50 % 55 176 124
40 % 55 176 145
30 % 55 176 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 178 55
95 % 58 181 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 59 185 70
70 % 59 185 89
50 % 59 185 118
40 % 59 185 141
30 % 59 185 153
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 51 335
95 % 47 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 49 171 74
70 % 51 177 90
50 % 56 187 109
40 % 56 187 132
30 % 56 187 145
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 53 294
95 % 46 157 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 46 157 92
70 % 49 169 100
50 % 49 169 134
40 % 49 169 150
30 % 49 169 169
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B0Z 1 A, E Histone H3.2 9606
2 5AV8 1 A, E Histone H3.1 9606
3 5AV9 1 A, E Histone H3.1 9606
4 5AV6 1 A, E Histone H3.1 9606
5 5B31 1 A, E Histone H3.1 9606
6 5AVB 1 A, E Histone H3.1 9606
7 5AVC 1 A, E Histone H3.1 9606
8 5AV5 1 A, E Histone H3.1 9606
9 5B1M 1 A, E Histone H3.1 10090
10 5JRG 1 A, E Histone H3.1 9606
11 3AZG 1 A, E Histone H3.1 9606
12 5B2J 1 A, E Histone H3.1 9606
13 3AZL 1 A, E Histone H3.1 9606
14 3AFA 1 A, E Histone H3.1 9606
15 3AZF 1 A, E Histone H3.1 9606
16 5GTC 1 A, E Histone H3.1 9606
17 3AV1 1 A, E Histone H3.2 9606
18 5CPK 1 A, E Histone H3.1 9606
19 3AZI 1 A, E Histone H3.1 9606
20 3AZN 1 A, E Histone H3.1 9606
21 5B2I 1 A, E Histone H3.1 9606
22 3AYW 1 A, E Histone H3.1 9606
23 3AZJ 1 A, E Histone H3.1 9606
24 5GSE 1 A, E, K, O Histone H3.1 9606
25 3WKJ 1 A, E Histone H3.1 9606
26 3AZK 1 A, E Histone H3.1 9606
27 3AZM 1 A, E Histone H3.1 9606
28 3WA9 1 A, E Histone H3.1 9606
29 3AZH 1 A, E Histone H3.1 9606
30 5B40 1 A, E Histone H3.2 9606
31 3WAA 1 A, E Histone H3.1 9606
32 5CPI 1 A, E Histone H3.1 9606
33 3W99 1 A, E Histone H3.1 9606
34 3AZE 1 A, E Histone H3.1 9606
35 3W96 1 A, E Histone H3.1 9606
36 5CPJ 1 A, E Histone H3.1 9606
37 5B24 1 A, E Histone H3.1 9606
38 3W97 1 A, E Histone H3.1 9606
39 4YM5 1 A, E Histone H3.1 9606
40 4YM6 1 A, E Histone H3.1 9606