Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 353
95 % 44 126 106
90 % 44 129 107
70 % 44 130 122
50 % 45 133 145
40 % 45 133 161
30 % 45 133 179
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 89
95 % 47 135 99
90 % 48 140 84
70 % 48 140 98
50 % 48 140 134
40 % 48 140 146
30 % 48 140 167
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 42 274
95 % 36 115 115
90 % 39 124 109
70 % 40 128 117
50 % 43 135 133
40 % 43 135 145
30 % 43 135 165
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 301
95 % 36 114 118
90 % 36 117 119
70 % 38 123 129
50 % 38 123 155
40 % 38 123 171
30 % 38 123 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5AV8 1 A, E Histone H3.1 9606
2 5AV9 1 A, E Histone H3.1 9606
3 5AV6 1 A, E Histone H3.1 9606
4 5AVB 1 A, E Histone H3.1 9606
5 5AVC 1 A, E Histone H3.1 9606
6 5AV5 1 A, E Histone H3.1 9606
7 2CV5 2 A, E Histone H3.1 9606
8 3AZL 1 A, E Histone H3.1 9606
9 3AFA 1 A, E Histone H3.1 9606
10 5CPK 1 A, E Histone H3.1 9606
11 3X1V 2 A, E Histone H3.1 9606
12 3X1T 2 A, E Histone H3.1 9606
13 3AZI 1 A, E Histone H3.1 9606
14 3AZN 1 A, E Histone H3.1 9606
15 3X1S 1 A, E Histone H3.1 9606
16 1U35 2 A, E Histone H3.1 10090
17 3AZJ 1 A, E Histone H3.1 9606
18 3WKJ 1 A, E Histone H3.1 9606
19 3AZK 1 A, E Histone H3.1 9606
20 3AZM 1 A, E Histone H3.1 9606
21 3X1U 2 A, E Histone H3.1 9606
22 3WA9 1 A, E Histone H3.1 9606
23 3WAA 1 A, E Histone H3.1 9606
24 5CPI 1 A, E Histone H3.1 9606
25 3W99 1 A, E Histone H3.1 9606
26 3W96 1 A, E Histone H3.1 9606
27 5CPJ 1 A, E Histone H3.1 9606
28 5B24 1 A, E Histone H3.1 9606
29 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
30 3W97 1 A, E Histone H3.1 9606
31 4YM5 1 A, E Histone H3.1 9606
32 4YM6 1 A, E Histone H3.1 9606