Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 326
95 % 51 143 92
90 % 51 146 85
70 % 51 147 103
50 % 52 150 137
40 % 52 150 153
30 % 52 150 169
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 134 80
95 % 55 153 74
90 % 56 158 75
70 % 56 158 90
50 % 56 158 128
40 % 56 158 143
30 % 56 158 158
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 50 258
95 % 43 129 114
90 % 46 140 86
70 % 48 146 95
50 % 53 156 122
40 % 53 156 140
30 % 53 156 155
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 297
95 % 43 128 116
90 % 43 133 115
70 % 46 140 121
50 % 46 140 148
40 % 46 140 163
30 % 46 140 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5AV8 1 A, E Histone H3.1 9606
2 5AV9 1 A, E Histone H3.1 9606
3 5AV6 1 A, E Histone H3.1 9606
4 5B31 1 A, E Histone H3.1 9606
5 5AVB 1 A, E Histone H3.1 9606
6 5AVC 1 A, E Histone H3.1 9606
7 5AV5 1 A, E Histone H3.1 9606
8 5B1M 1 A, E Histone H3.1 10090
9 5JRG 1 A, E Histone H3.1 9606
10 5B2J 1 A, E Histone H3.1 9606
11 2CV5 2 A, E Histone H3.1 9606
12 3AZL 1 A, E Histone H3.1 9606
13 3AFA 1 A, E Histone H3.1 9606
14 5CPK 1 A, E Histone H3.1 9606
15 3X1V 2 A, E Histone H3.1 9606
16 3X1T 2 A, E Histone H3.1 9606
17 5GT3 1 A, E Histone H3.1 9606
18 5GT0 1 A, E Histone H3.1 9606
19 3AZI 1 A, E Histone H3.1 9606
20 3AZN 1 A, E Histone H3.1 9606
21 3X1S 1 A, E Histone H3.1 9606
22 5B2I 1 A, E Histone H3.1 9606
23 1U35 2 A, E Histone H3.1 10090
24 3AZJ 1 A, E Histone H3.1 9606
25 5GSU 1 A, E Histone H3.1 9606
26 3WKJ 1 A, E Histone H3.1 9606
27 3AZK 1 A, E Histone H3.1 9606
28 3AZM 1 A, E Histone H3.1 9606
29 3X1U 2 A, E Histone H3.1 9606
30 3WA9 1 A, E Histone H3.1 9606
31 3WAA 1 A, E Histone H3.1 9606
32 5CPI 1 A, E Histone H3.1 9606
33 3W99 1 A, E Histone H3.1 9606
34 3W96 1 A, E Histone H3.1 9606
35 5CPJ 1 A, E Histone H3.1 9606
36 5B24 1 A, E Histone H3.1 9606
37 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
38 3W97 1 A, E Histone H3.1 9606
39 4YM5 1 A, E Histone H3.1 9606
40 4YM6 1 A, E Histone H3.1 9606