Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 333
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 155
30 % 47 137 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 84
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 143
30 % 51 145 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 112
90 % 41 128 108
70 % 42 132 112
50 % 45 139 128
40 % 45 139 142
30 % 45 139 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 115
90 % 38 121 118
70 % 40 127 125
50 % 40 127 152
40 % 40 127 169
30 % 40 127 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5AV8 1 A, E Histone H3.1 9606
2 5AV9 1 A, E Histone H3.1 9606
3 5AV6 1 A, E Histone H3.1 9606
4 5AVB 1 A, E Histone H3.1 9606
5 5AVC 1 A, E Histone H3.1 9606
6 5AV5 1 A, E Histone H3.1 9606
7 5B2J 1 A, E Histone H3.1 9606
8 2CV5 2 A, E Histone H3.1 9606
9 3AZL 1 A, E Histone H3.1 9606
10 3AFA 1 A, E Histone H3.1 9606
11 5CPK 1 A, E Histone H3.1 9606
12 3X1V 2 A, E Histone H3.1 9606
13 3X1T 2 A, E Histone H3.1 9606
14 3AZI 1 A, E Histone H3.1 9606
15 3AZN 1 A, E Histone H3.1 9606
16 3X1S 1 A, E Histone H3.1 9606
17 5B2I 1 A, E Histone H3.1 9606
18 1U35 2 A, E Histone H3.1 10090
19 3AZJ 1 A, E Histone H3.1 9606
20 3WKJ 1 A, E Histone H3.1 9606
21 3AZK 1 A, E Histone H3.1 9606
22 3AZM 1 A, E Histone H3.1 9606
23 3X1U 2 A, E Histone H3.1 9606
24 3WA9 1 A, E Histone H3.1 9606
25 3WAA 1 A, E Histone H3.1 9606
26 5CPI 1 A, E Histone H3.1 9606
27 3W99 1 A, E Histone H3.1 9606
28 3W96 1 A, E Histone H3.1 9606
29 5CPJ 1 A, E Histone H3.1 9606
30 5B24 1 A, E Histone H3.1 9606
31 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
32 3W97 1 A, E Histone H3.1 9606
33 4YM5 1 A, E Histone H3.1 9606
34 4YM6 1 A, E Histone H3.1 9606