Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 42 308
95 % 52 150 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 52 153 78
70 % 52 154 96
50 % 53 157 131
40 % 53 157 147
30 % 53 157 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 141 76
95 % 56 160 75 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 57 165 75
70 % 57 165 86
50 % 57 197 123
40 % 57 165 139
30 % 57 165 153
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 85 245
95 % 45 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 47 148 79
70 % 49 154 90
50 % 54 164 120
40 % 54 164 138
30 % 54 164 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 48 267
95 % 44 135 112 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 44 140 107
70 % 47 147 102
50 % 47 147 139
40 % 47 147 156
30 % 47 147 172
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5AV8 1 A, E Histone H3.1 9606
2 5AV9 1 A, E Histone H3.1 9606
3 5AV6 1 A, E Histone H3.1 9606
4 5B31 1 A, E Histone H3.1 9606
5 5AVB 1 A, E Histone H3.1 9606
6 5AVC 1 A, E Histone H3.1 9606
7 5AV5 1 A, E Histone H3.1 9606
8 5B1M 1 A, E Histone H3.1 10090
9 5JRG 1 A, E Histone H3.1 9606
10 5B2J 1 A, E Histone H3.1 9606
11 2CV5 2 A, E Histone H3.1 9606
12 3AZL 1 A, E Histone H3.1 9606
13 3AFA 1 A, E Histone H3.1 9606
14 5GTC 1 A, E Histone H3.1 9606
15 5CPK 1 A, E Histone H3.1 9606
16 3X1V 2 A, E Histone H3.1 9606
17 3X1T 2 A, E Histone H3.1 9606
18 5GT3 1 A, E Histone H3.1 9606
19 5GT0 1 A, E Histone H3.1 9606
20 3AZI 1 A, E Histone H3.1 9606
21 3AZN 1 A, E Histone H3.1 9606
22 3X1S 1 A, E Histone H3.1 9606
23 5B2I 1 A, E Histone H3.1 9606
24 1U35 2 A, E Histone H3.1 10090
25 3AZJ 1 A, E Histone H3.1 9606
26 5GSU 1 A, E Histone H3.1 9606
27 5GSE 1 A, E, K, O Histone H3.1 9606
28 3WKJ 1 A, E Histone H3.1 9606
29 3AZK 1 A, E Histone H3.1 9606
30 3AZM 1 A, E Histone H3.1 9606
31 3X1U 2 A, E Histone H3.1 9606
32 3WA9 1 A, E Histone H3.1 9606
33 3WAA 1 A, E Histone H3.1 9606
34 5CPI 1 A, E Histone H3.1 9606
35 3W99 1 A, E Histone H3.1 9606
36 3W96 1 A, E Histone H3.1 9606
37 5CPJ 1 A, E Histone H3.1 9606
38 5B24 1 A, E Histone H3.1 9606
39 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
40 3W97 1 A, E Histone H3.1 9606
41 4YM5 1 A, E Histone H3.1 9606
42 4YM6 1 A, E Histone H3.1 9606