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An Information Portal to 107620 Biological Macromolecular Structures

The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1051
95% 33 98 98
90% 33 101 103
70% 33 101 123
50% 34 104 159
40% 34 104 181
30% 34 104 198
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 84 92
95% 34 100 96
90% 35 104 95
70% 35 104 114
50% 35 104 153
40% 35 104 176
30% 35 104 195
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 592
95% 24 86 129
90% 27 92 106
70% 27 95 124
50% 29 101 150
40% 29 101 174
30% 29 101 192
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 656
95% 25 86 131
90% 25 88 137
70% 27 94 128
50% 27 94 172
40% 27 94 193
30% 27 94 209
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.