Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 39 330
95 % 50 142 98
90 % 50 145 83
70 % 50 146 101
50 % 51 149 133
40 % 51 149 151
30 % 51 149 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 133 81
95 % 54 152 71
90 % 55 157 73
70 % 55 157 86
50 % 55 157 124
40 % 55 157 141
30 % 55 157 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 49 251
95 % 42 128 109
90 % 45 139 87
70 % 47 145 93
50 % 52 155 119
40 % 52 155 139
30 % 52 155 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 43 303
95 % 42 127 113
90 % 42 132 111
70 % 45 139 120
50 % 45 139 145
40 % 45 139 161
30 % 45 139 179
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.