Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 353
95 % 44 126 106
90 % 44 129 107
70 % 44 130 122
50 % 45 133 145
40 % 45 133 161
30 % 45 133 179
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 89
95 % 47 135 99
90 % 48 140 84
70 % 48 140 98
50 % 48 140 134
40 % 48 140 146
30 % 48 140 167
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 42 274
95 % 36 115 115
90 % 39 124 109
70 % 40 128 117
50 % 43 135 133
40 % 43 135 145
30 % 43 135 165
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 301
95 % 36 114 118
90 % 36 117 119
70 % 38 123 129
50 % 38 123 155
40 % 38 123 171
30 % 38 123 186
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.