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An Information Portal to 111749 Biological Macromolecular Structures

The human nucleosome structure
Sequence Clustering and Redundancy Reduction Results
3AFA
Sequence Clusters for the Sequence Entities in PDB 3AFA
Entity #1: Chains: A,E - Histone H3.1 protein, length: 139 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 866
95% 35 102 121
90% 35 105 126
70% 35 105 141
50% 36 108 163
40% 36 108 183
30% 36 108 197
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 92 95
95% 38 109 113
90% 39 113 97
70% 39 113 117
50% 39 113 152
40% 39 113 169
30% 39 113 186
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 23 623
95% 26 88 136
90% 29 95 132
70% 29 98 146
50% 31 104 164
40% 31 104 184
30% 31 104 198
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 687
95% 27 88 137
90% 27 90 146
70% 29 97 153
50% 29 97 182
40% 29 97 197
30% 29 97 215
Entity #5: Chains: I,J - 146-MER DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.