Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 352
95 % 44 126 103
90 % 44 129 103
70 % 44 130 116
50 % 45 133 142
40 % 45 133 156
30 % 45 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 117 85
95 % 47 135 78
90 % 48 140 78
70 % 48 140 92
50 % 48 140 130
40 % 48 140 144
30 % 48 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 41 276
95 % 36 114 112
90 % 39 123 106
70 % 40 127 106
50 % 43 134 129
40 % 43 134 143
30 % 43 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 300
95 % 36 113 116
90 % 36 116 117
70 % 38 122 128
50 % 38 122 155
40 % 38 122 169
30 % 38 122 185
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.