Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 40 323
95 % 51 143 90
90 % 51 146 83
70 % 51 147 101
50 % 52 150 136
40 % 52 150 152
30 % 52 150 169
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 134 78
95 % 55 153 72
90 % 56 158 73
70 % 56 158 88
50 % 56 158 127
40 % 56 158 142
30 % 56 158 158
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 50 254
95 % 43 129 112
90 % 46 140 84
70 % 48 146 93
50 % 53 156 121
40 % 53 156 139
30 % 53 156 155
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 44 294
95 % 43 128 114
90 % 43 133 113
70 % 46 140 119
50 % 46 140 147
40 % 46 140 162
30 % 46 140 182
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.