Sequence Similarity Clusters for the Entities in PDB 3AFA

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 34 337
95 % 46 130 105
90 % 46 133 105
70 % 46 134 116
50 % 47 137 141
40 % 47 137 156
30 % 47 137 178
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 121 85
95 % 50 140 83
90 % 51 145 75
70 % 51 145 90
50 % 51 145 129
40 % 51 145 145
30 % 51 145 164
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 45 254
95 % 38 119 113
90 % 41 128 108
70 % 42 132 113
50 % 45 139 128
40 % 45 139 144
30 % 45 139 163
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 40 285
95 % 38 118 116
90 % 38 121 119
70 % 40 127 125
50 % 40 127 153
40 % 40 127 171
30 % 40 127 187
Entity #5 | Chains: I,J
146-MER DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.