Sequence Similarity Clusters for the Entities in PDB 2YPT

Entity #1 | Chains: A,B,D,E
CAAX PRENYL PROTEASE 1 HOMOLOG protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17639
95 % 3 3 7689 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 7637
70 % 3 3 7425
50 % 3 3 6840
40 % 3 3 6373
30 % 3 3 5703
Entity #2 | Chains: F,G,H,I
PRELAMIN-A/C protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures