Sequence Similarity Clusters for the Entities in PDB 2YPT

Entity #1 | Chains: A,B,D,E
CAAX PRENYL PROTEASE 1 HOMOLOG protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17907
95 % 3 3 7796 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 7742
70 % 3 3 7524
50 % 3 3 6934
40 % 3 3 6455
30 % 3 3 5780
Entity #2 | Chains: F,G,H,I
PRELAMIN-A/C protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures