Sequence Similarity Clusters for the Entities in PDB 2YPT

Entity #1 | Chains: A,B,D,E
CAAX PRENYL PROTEASE 1 HOMOLOG protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17226
95 % 3 3 7528 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 7478
70 % 3 3 7284
50 % 3 3 6710
40 % 3 3 6251
30 % 3 3 5591
Entity #2 | Chains: F,G,H,I
PRELAMIN-A/C protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.