Sequence Similarity Clusters for the Entities in PDB 2YOL

Entity #1 | Chains: A
SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24823
95 % 2 2 21976 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 2 21307
70 % 2 2 19514
50 % 12 15 3110
40 % 12 16 2708
30 % 12 16 2511

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5IDK 1 A, B, C Genome polyprotein,SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 11082 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
2 2YOL 1 A SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 RESIDUES SER47 TO PRO91 BELONG TO NS2B, WHICH WE DESIGNATED AS MOLECULE A IN THE ASSOCIATED PUBLICATION. RESIDUES GLY1002 TO GLU1169 (RESIDUE NUMBERS WERE INCREMENTED BY 1000) BELONG TO NS3, WHICH WE DESIGNATED AS MOLECULE B IN THE ASSOCIATED PUBLICATION. NS2B, RESIDUES 1420-1466,AND NS3,1502-1671 11082 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details