Sequence Similarity Clusters for the Entities in PDB 2YOL

Entity #1 | Chains: A
SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21121
95 % 2 2 18414 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18031
70 % 2 2 16729
50 % 12 15 2962
40 % 12 16 2656
30 % 12 16 2502

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5IDK 1 A, B, C Genome polyprotein,SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 11082 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
2 4M9K 1 A NS2B-NS3 protease UNP RESIDUES 1394-1440, 1476-1660 12637
3 4M9M 1 A NS2B-NS3 protease UNP RESIDUES 1394-1440, 1476-1660 12637
4 4M9T 1 A NS2B-NS3 protease UNP RESIDUES 1394-1440, 1476-1660 12637
5 3LKW 1 A fusion protein of nonstructural protein 2B and nonstructural protein 3 NS2B residues 1394-1440, NS3 PROTEASE residues 1476-1661 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
6 3L6P 1 A fusion protein of nonstructural protein 2B and nonstructural protein 3 NS2B residues 1394-1440, NS3 PROTEASE residues 1476-1661 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
7 4M9I 1 A NS2B-NS3 protease UNP RESIDUES 1394-1440, 1476-1660 12637
8 5TFO 1 A, B NS2B-NS3 Protease CHIMERA,NS2B-NS3 PROTEASE,NS2B-NS3 Protease CHIMERA Residues V76-L86 of NS2B were substituted with GG Chains A and B were expressed as a single polypeptide chain. 64320
9 5LC0 1 A, B NS2B-NS3 protease,NS2B-NS3 protease 64320
10 5GXJ 1 A, B FLAVIVIRUS_NS2B,LINKER,Peptidase S7 UNP residues 1420-1464,UNP residues 1503-1672 64320
11 4M9F 1 A NS2B-NS3 protease UNP residues 1394-1440, 1476-1660 12637
12 2YOL 1 A SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3 RESIDUES SER47 TO PRO91 BELONG TO NS2B, WHICH WE DESIGNATED AS MOLECULE A IN THE ASSOCIATED PUBLICATION. RESIDUES GLY1002 TO GLU1169 (RESIDUE NUMBERS WERE INCREMENTED BY 1000) BELONG TO NS3, WHICH WE DESIGNATED AS MOLECULE B IN THE ASSOCIATED PUBLICATION. NS2B, RESIDUES 1420-1466,AND NS3,1502-1671 11082 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
13 5TFN 1 A, B NS2B-NS3 Protease CHIMERA,Genome polyprotein Chains A and B were expressed as a single polypeptide chain., Chains A and B were expressed as a single polypeptide, connected by the artificial linker AGGGGSGGGGS 64320
14 2M9P 1 A Serine protease subunit NS2B, Serine protease NS3 UNP residues 1391-1440 and 1476-1648 12637 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
15 2M9Q 1 A Serine protease subunit NS2B, Serine protease NS3 UNP residues 1391-1440 and 1476-1648 12637 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details