2YNM

Structure of the ADPxAlF3-Stabilized Transition State of the Nitrogenase-like Dark-Operative Protochlorophyllide Oxidoreductase Complex from Prochlorococcus marinus with Its Substrate Protochlorophyllide a


Sequence Similarity Clusters for the Entities in PDB 2YNM

Entity #1 | Chains: A,B
LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37395
95 % 1 1 29268 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 28240
70 % 1 1 25474
50 % 2 2 13920
40 % 2 2 12488
30 % 2 2 10764
Entity #2 | Chains: C
LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE SUBUNIT N protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53793
95 % 1 1 39280
90 % 1 1 37503
70 % 1 1 33323
50 % 1 7 4823
40 % 1 7 4575
30 % 1 7 4196
Entity #3 | Chains: D
LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE SUBUNIT B protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52332
95 % 1 1 38615
90 % 1 1 36867
70 % 1 1 32800
50 % 1 7 4794
40 % 1 7 4553
30 % 1 8 3897

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures