Sequence Similarity Clusters for the Entities in PDB 2YNG

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 61 532
95 % 13 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 13 248 99
70 % 13 248 117
50 % 13 249 151
40 % 13 249 166
30 % 13 249 180
Entity #2 | Chains: B
P51 RT protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 57 649
95 % 13 242 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 13 242 123
70 % 13 242 139
50 % 13 243 158
40 % 13 243 175
30 % 13 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YNG 2 B P51 RT RESIDUES 588-1015 11676
2 1VRT 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
3 3QIP 2 B p51 p51 subunit (UNP Residues 588-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details 3.4.23.16 | Details
4 1RTH 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
5 3DLG 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
6 1VRU 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
7 2RF2 2 B Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT) HIV-1 reverse transcriptase 11676 2.7.7.49 | Details
8 2YNF 2 B P51 RT RESIDUES 588-1015 11676
9 2RKI 2 B HIV-1 reverse transcriptase (RT) p51 11676 2.7.7.49 | Details
10 3DYA 2 B p51 RT UNP RESIDUES 588-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
11 5K14 2 B HIV-1 reverse transcriptase (isolate LW123) 11676 2.7.7.49 | Details
12 3MEC 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
13 1RTJ 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
14 4KV8 2 B HIV Reverse transcriptase P51 PROTEIN CONSTRUCT ID pIADL287 11676
15 2YNI 2 B P51 RT RESIDUES 588-1015 11676
16 1RT1 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
17 3DRP 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
18 3MEE 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
19 2OPP 2 B p51 RT P51 11676 2.7.7.49 | Details
20 3DLE 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
21 1FK9 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
22 1RT2 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
23 4I7F 2 B Reverse transcriptase p51 11676 2.7.7.49 | Details
24 1TKT 2 B Pol polyproteins [Reverse transcriptase], Chain B P51 11676 2.7.7.49 | Details
25 3DOL 2 B p66 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
26 1C1C 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
27 1C0U 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
28 3C6U 2 B Reverse transcriptase 11676
29 4NCG 2 B p51 RT HIV-1 Reverse Transcriptase p51 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
30 3C6T 2 B Reverse transcriptase 11676
31 1C0T 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
32 3M8P 2 B p51 RT 11676
33 1REV 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
34 3DI6 2 B p51 RT UNP residues 588-1027 11676
35 1EP4 2 B HIV-1 REVERSE TRANSCRIPTASE P51 11676 2.7.7.49 | Details
36 3M8Q 2 B p51 RT 11676
37 1TL3 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
38 1TKZ 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
39 3FFI 2 B RT p51 UNP residues 588-1027 11676
40 1DTT 2 B HIV-1 RT B-CHAIN P51 11676
41 1DTQ 2 B HIV-1 RT B-CHAIN P51 11676
42 3NBP 2 B p51 RT 11676
43 1KLM 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
44 2YNH 2 B P51 RT RESIDUES 588-1015 11676
45 3I0S 2 B p51 RT Gag-Pol polyprotein P51 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details
46 1TKX 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
47 1TL1 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
48 1RT6 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
49 1JLQ 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
50 1RT5 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
51 3I0R 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
52 1RT4 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
53 2WON 2 B HIV-1 REVERSE TRANSCRIPTASE P51, RESIDUES 588-1027 11676 2.7.7.49 | Details
54 3E01 2 B Gag-Pol polyprotein UNP RESIDUES 588-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
55 1RTI 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
56 1RTD 4 B, D PROTEIN (REVERSE TRANSCRIPTASE) P50 11676 2.7.7.49 | Details
57 1RT7 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details