Sequence Similarity Clusters for the Entities in PDB 2YNG

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 32 1442
95 % 24 277 88 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 24 277 92
70 % 24 277 107
50 % 24 278 144
40 % 24 279 156
30 % 24 279 173
Entity #2 | Chains: B
P51 RT protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 83 435
95 % 24 271 109 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 24 271 115
70 % 24 271 126
50 % 24 273 152
40 % 24 273 167
30 % 24 273 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YNG 2 B P51 RT RESIDUES 588-1015 11676
2 1VRT 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
3 3QIP 2 B p51 p51 subunit (UNP Residues 588-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details 3.4.23.16 | Details
4 1RTH 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
5 3DLG 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
6 1VRU 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
7 2RF2 2 B Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT) HIV-1 reverse transcriptase 11676 2.7.7.49 | Details
8 2YNF 2 B P51 RT RESIDUES 588-1015 11676
9 2RKI 2 B HIV-1 reverse transcriptase (RT) p51 11676 2.7.7.49 | Details
10 3DYA 2 B p51 RT UNP RESIDUES 588-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
11 1S1T 2 B Reverse transcriptase P51 11676 2.7.7.49 | Details
12 5J2M 2 B HIV-1 reverse transcriptase p51 subunit unp residues 1-440 11676 2.7.7 | Details
13 5K14 2 B HIV-1 reverse transcriptase (isolate LW123) 11676 2.7.7.49 | Details
14 1C1B 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
15 3MEC 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
16 1RTJ 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
17 4KV8 2 B HIV Reverse transcriptase P51 PROTEIN CONSTRUCT ID pIADL287 11676
18 3TAM 2 B p51 RT unp residues 588-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
19 5J2P 2 B reverse transcriptase, p51 domain 11676 2.7.7 | Details
20 2YNI 2 B P51 RT RESIDUES 588-1015 11676
21 1RT1 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
22 3DRP 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
23 3MEE 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
24 2OPP 2 B p51 RT P51 11676 2.7.7.49 | Details
25 3DLE 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
26 1FK9 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
27 1RT2 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
28 3LP1 2 B p51 RT 11676 2.7.7.49 | Details 2.7.7.7 | Details
29 4I7F 2 B Reverse transcriptase p51 11676 2.7.7.49 | Details
30 1TKT 2 B Pol polyproteins [Reverse transcriptase], Chain B P51 11676 2.7.7.49 | Details
31 3DOL 2 B p66 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
32 3MED 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
33 1C1C 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
34 1C0U 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
35 3C6U 2 B Reverse transcriptase 11676
36 4NCG 2 B p51 RT HIV-1 Reverse Transcriptase p51 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
37 1LWC 2 B HIV-1 REVERSE TRANSCRIPTASE p51 11676 2.7.7.49 | Details
38 1S1V 2 B Reverse transcriptase P51 11676 2.7.7.49 | Details
39 3C6T 2 B Reverse transcriptase 11676
40 1C0T 2 B HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) P51 11676 2.7.7.49 | Details
41 3M8P 2 B p51 RT 11676
42 5VZ6 2 B HIV Reverse Transcriptase UNP residues 585-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
43 1REV 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
44 3DI6 2 B p51 RT UNP residues 588-1027 11676
45 1EP4 2 B HIV-1 REVERSE TRANSCRIPTASE P51 11676 2.7.7.49 | Details
46 3M8Q 2 B p51 RT 11676
47 1TL3 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
48 1TKZ 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
49 3FFI 2 B RT p51 UNP residues 588-1027 11676
50 5J2Q 2 B HIV-1 reverse transcriptase p51 domain 11676 2.7.7 | Details
51 1DTT 2 B HIV-1 RT B-CHAIN P51 11676
52 1DTQ 2 B HIV-1 RT B-CHAIN P51 11676
53 3NBP 2 B p51 RT 11676
54 1FKO 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
55 1KLM 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
56 2YNH 2 B P51 RT RESIDUES 588-1015 11676
57 1FKP 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
58 3I0S 2 B p51 RT Gag-Pol polyprotein P51 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details
59 1TKX 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
60 5J2N 2 B reverse transcriptase, p51 domain 11676 2.7.7 | Details
61 3DRS 2 B p66 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
62 1S1X 2 B Reverse transcriptase P51 11676 2.7.7.49 | Details
63 3DOK 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
64 3MEG 2 B p51 Reverse transcriptase 11676 2.7.7.49 | Details
65 1TL1 2 B Pol polyprotein, Reverse transcriptase, Chain B P51 11676 2.7.7.49 | Details
66 1RT6 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
67 1S1U 2 B Reverse transcriptase P51 11676 2.7.7.49 | Details
68 1JLQ 2 B HIV-1 RT, B-CHAIN P51 11676 2.7.7.49 | Details
69 1RT5 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
70 3I0R 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
71 1RT4 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
72 3LP0 2 B p51 RT 11676 2.7.7.49 | Details 2.7.7.7 | Details
73 3LP2 2 B p51 RT 11676 2.7.7.49 | Details 2.7.7.7 | Details
74 2WON 2 B HIV-1 REVERSE TRANSCRIPTASE P51, RESIDUES 588-1027 11676 2.7.7.49 | Details
75 3E01 2 B Gag-Pol polyprotein UNP RESIDUES 588-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
76 3DM2 2 B p51 RT GAG-POL POLYPROTEIN P51 SUBUNIT 11676
77 1RTI 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
78 1TV6 2 B reverse transcriptase p51 subunit 11676 2.7.7.4 | Details
79 1RTD 4 B, D PROTEIN (REVERSE TRANSCRIPTASE) P50 11676 2.7.7.49 | Details
80 2WOM 2 B HIV-1 REVERSE TRANSCRIPTASE P51, RESIDUES 588-1027 11676 2.7.7.49 | Details
81 1RT7 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
82 1RT3 2 B HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
83 1HMV 2 B, D, F, H HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) 11676 2.7.7.49 | Details