Sequence Similarity Clusters for the Entities in PDB 2YNG

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 61 532
95 % 13 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 13 248 99
70 % 13 248 117
50 % 13 249 151
40 % 13 249 166
30 % 13 249 180
Entity #2 | Chains: B
P51 RT protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 57 649
95 % 13 242 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 13 242 123
70 % 13 242 139
50 % 13 243 158
40 % 13 243 175
30 % 13 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YNG 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
2 1VRT 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
3 3QIP 1 A Reverse HIV-1 reverse transcriptase p66 p66 subunit (UNP residues 588-1147) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details 3.4.23.16 | Details
4 1RTH 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
5 3DLG 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
6 1VRU 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
7 2RF2 1 A Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT) HIV-1 reverse transcriptase 11676 2.7.7.49 | Details
8 2RKI 1 A HIV-1 reverse transcriptase (RT) p66 11676 2.7.7.49 | Details
9 3DYA 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H UNP RESIDUES 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
10 5K14 1 A HIV-1 reverse transcriptase(isolate HXB2) 11676
11 1C1B 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
12 3LAK 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
13 3MEC 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
14 1RTJ 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
15 4KV8 1 A HIV Reverse transcriptase P66 PROTEIN CONSTRUCT ID pIADL290 11676 3.1.13.2 | Details
16 2YNI 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
17 1RT1 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
18 3DRP 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
19 3MEE 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
20 2OPP 1 A Reverse transcriptase/ribonuclease H P66 11676 2.7.7.49 | Details
21 3DLE 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
22 1FK9 1 A HIV-1 RT, A-CHAIN COMPLEXED WITH DMP-266(EFAVIRENZ) P66 11676 2.7.7.49 | Details
23 1RT2 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
24 3T19 1 A, B Reverse Transcriptase unp residues 588-1147 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
25 4I7F 1 A Reverse transcriptase p66 11676 2.7.7.49 | Details
26 3LAL 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
27 1TKT 1 A Pol polyproteins [Reverse transcriptase], Chain A P66 11676 2.7.7.49 | Details
28 1C1C 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
29 1C0U 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
30 3C6U 1 A Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
31 4NCG 1 A Reverse transcriptase/ribonuclease H HIV-1 Reverse Transcriptase p66 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
32 3C6T 1 A Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
33 1C0T 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
34 3M8P 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
35 1REV 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
36 3DI6 1 A Reverse transcriptase/ribonuclease H UNP residues 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
37 1EP4 1 A HIV-1 REVERSE TRANSCRIPTASE P66 11676 2.7.7.49 | Details
38 3LAN 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
39 3M8Q 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
40 1TL3 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
41 1TKZ 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
42 3FFI 1 A Reverse transcriptase/ribonuclease H UNP residues 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
43 1DTT 1 A HIV-1 RT A-CHAIN P66 11676
44 1DTQ 1 A HIV-1 RT A-CHAIN P66 11676
45 3NBP 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
46 1KLM 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
47 2YNH 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
48 3I0S 1 A Reverse transcriptase/ribonuclease H Gag-Pol polyprotein P66 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
49 1TKX 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
50 3LAM 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
51 1TL1 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
52 1RT6 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
53 1JLQ 1 A HIV-1 RT, A-CHAIN P66 11676 2.7.7.49 | Details
54 1RT5 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
55 3I0R 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
56 1RT4 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
57 2WON 1 A HIV-1 REVERSE TRANSCRIPTASE P66, RESIDUES 588-1147 11676 2.7.7.49 | Details
58 3E01 1 A Gag-Pol polyprotein UNP RESIDUES 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
59 1RTI 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
60 2JLE 1 A, B REVERSE TRANSCRIPTASE/RNASEH 11676
61 1RT7 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details