Sequence Similarity Clusters for the Entities in PDB 2YNG

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 32 1405
95 % 13 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 13 258 119
70 % 13 258 135
50 % 13 259 163
40 % 13 260 173
30 % 13 260 191
Entity #2 | Chains: B
P51 RT protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 83 417
95 % 13 252 121 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 13 252 124
70 % 13 252 141
50 % 13 254 169
40 % 13 254 183
30 % 13 254 201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YNG 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
2 2RF2 1 A Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT) HIV-1 reverse transcriptase 11676 2.7.7.49 | Details
3 2YNF 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
4 3DYA 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H UNP RESIDUES 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
5 3T1A 1 A, B Reverse Transcriptase unp residues 588-1147 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
6 4KV8 1 A HIV Reverse transcriptase P66 PROTEIN CONSTRUCT ID pIADL290 11676 3.1.13.2 | Details
7 3TAM 1 A Reverse transcriptase/ribonuclease H p66 RT unp residues 590-1147 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
8 2YNI 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
9 3DRP 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
10 2OPP 1 A Reverse transcriptase/ribonuclease H P66 11676 2.7.7.49 | Details
11 1FK9 1 A HIV-1 RT, A-CHAIN COMPLEXED WITH DMP-266(EFAVIRENZ) P66 11676 2.7.7.49 | Details
12 3T19 1 A, B Reverse Transcriptase unp residues 588-1147 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
13 3LP1 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
14 3C6U 1 A Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
15 4NCG 1 A Reverse transcriptase/ribonuclease H HIV-1 Reverse Transcriptase p66 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
16 3C6T 1 A Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
17 3M8P 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
18 5VZ6 1 A HIV Reverse Transcriptase UNP residues 585-1149 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
19 3DI6 1 A Reverse transcriptase/ribonuclease H UNP residues 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
20 3M8Q 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
21 3FFI 1 A Reverse transcriptase/ribonuclease H UNP residues 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
22 3NBP 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
23 1FKO 1 A HIV-1 RT, A-CHAIN COMPLEXED WITH DMP-266(EFAVIRENZ) P66 11676 2.7.7.49 | Details
24 2YNH 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
25 1FKP 1 A HIV-1 RT, A-CHAIN NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE COMPLEX P66 11676 2.7.7.49 | Details
26 3I0S 1 A Reverse transcriptase/ribonuclease H Gag-Pol polyprotein P66 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
27 3DRS 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
28 3I0R 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
29 3LP0 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
30 3LP2 1 A Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
31 3E01 1 A Gag-Pol polyprotein UNP RESIDUES 588-1148 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
32 2JLE 1 A, B REVERSE TRANSCRIPTASE/RNASEH 11676