Sequence Similarity Clusters for the Entities in PDB 2YNF

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49521
95 % 25 237 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 25 237 111
70 % 25 237 126
50 % 26 238 152
40 % 26 238 169
30 % 26 238 184
Entity #2 | Chains: B
P51 RT protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 57 626
95 % 25 231 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 25 231 118
70 % 25 231 136
50 % 26 232 164
40 % 26 232 180
30 % 26 232 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.