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THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME.
Sequence Clustering and Redundancy Reduction Results
2Y14
Sequence Clusters for the Sequence Entities in PDB 2Y14
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 265 27
95% 158 267 47
90% 158 267 49
70% 158 267 59
50% 203 382 34
40% 203 382 45
30% 203 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 268 25
95% 158 268 43
90% 158 268 45
70% 158 268 55
50% 197 376 41
40% 221 436 38
30% 221 436 51
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 237 35
95% 158 275 35
90% 158 275 37
70% 197 388 24
50% 197 388 33
40% 197 388 44
30% 197 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 269 22
95% 158 269 41
90% 158 269 43
70% 158 269 53
50% 197 378 38
40% 197 378 51
30% 219 434 54
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 267 26
95% 158 267 48
90% 158 267 50
70% 158 267 60
50% 158 267 93
40% 158 267 119
30% 158 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 271 20
95% 162 276 32
90% 162 276 34
70% 162 276 47
50% 204 389 32
40% 204 389 43
30% 204 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 263 28
95% 158 268 45
90% 158 268 47
70% 158 268 57
50% 158 268 91
40% 158 268 117
30% 197 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 170 53
95% 157 262 49
90% 158 266 51
70% 158 266 61
50% 158 266 94
40% 158 266 120
30% 158 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 183 47
95% 152 232 61
90% 152 232 64
70% 152 232 78
50% 152 232 113
40% 152 232 138
30% 152 232 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 234 37
95% 152 234 59
90% 152 234 63
70% 152 234 77
50% 198 379 37
40% 198 379 49
30% 198 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 268 23
95% 158 269 38
90% 158 269 41
70% 158 269 51
50% 158 269 90
40% 197 376 53
30% 197 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 206 42
95% 158 267 46
90% 158 267 48
70% 158 267 58
50% 158 267 92
40% 158 267 118
30% 158 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 249 33
95% 158 249 52
90% 158 249 55
70% 158 249 66
50% 158 249 103
40% 158 249 130
30% 158 249 150
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA G24A TRP-TRNA TRP rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU protein, length: 405 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 5801
95% 24 30 916
90% 24 31 905
70% 39 56 410
50% 41 58 416
40% 41 58 443
30% 57 79 334
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 230 38
95% 151 230 62
90% 151 230 65
70% 151 230 79
50% 166 293 73
40% 166 293 98
30% 166 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 261 29
95% 158 269 39
90% 158 269 42
70% 158 269 52
50% 197 376 39
40% 197 377 52
30% 197 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 268 24
95% 158 268 42
90% 158 268 44
70% 158 268 54
50% 198 380 36
40% 198 380 48
30% 198 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 273 18
95% 166 279 29
90% 166 279 30
70% 166 279 44
50% 166 279 82
40% 166 279 106
30% 192 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 272 19
95% 159 273 36
90% 159 273 38
70% 159 273 49
50% 185 321 56
40% 185 322 73
30% 185 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 268 21
95% 158 268 40
90% 159 272 39
70% 159 272 50
50% 200 382 35
40% 201 384 46
30% 224 441 47
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 155 76
95% 158 268 44
90% 158 268 46
70% 158 268 56
50% 197 376 40
40% 197 376 54
30% 219 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.