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THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
2Y0Y
Sequence Clusters for the Sequence Entities in PDB 2Y0Y
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 257 29
95% 132 259 47
90% 132 259 51
70% 132 259 61
50% 177 374 34
40% 177 374 46
30% 177 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 260 26
95% 132 260 43
90% 132 260 46
70% 132 260 57
50% 171 368 42
40% 175 408 40
30% 175 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 229 36
95% 132 267 36
90% 132 267 38
70% 171 380 24
50% 171 380 33
40% 171 380 45
30% 171 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 261 22
95% 132 261 41
90% 132 261 43
70% 132 261 55
50% 171 370 39
40% 171 370 53
30% 173 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 259 27
95% 132 259 48
90% 132 259 52
70% 132 259 62
50% 132 259 97
40% 132 259 123
30% 132 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 263 20
95% 136 268 35
90% 136 268 37
70% 136 268 48
50% 178 381 32
40% 178 381 43
30% 178 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 255 30
95% 132 260 45
90% 132 260 48
70% 132 260 59
50% 132 260 94
40% 132 260 120
30% 171 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 162 57
95% 131 254 50
90% 132 258 53
70% 132 258 63
50% 132 258 99
40% 132 258 124
30% 132 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 175 50
95% 126 224 63
90% 126 224 67
70% 126 224 81
50% 126 224 115
40% 126 224 141
30% 126 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 226 37
95% 126 226 62
90% 126 226 65
70% 126 226 80
50% 172 371 38
40% 172 371 51
30% 172 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 260 24
95% 132 261 38
90% 132 261 41
70% 132 261 52
50% 132 261 92
40% 171 368 55
30% 171 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 198 43
95% 132 259 46
90% 132 259 50
70% 132 259 60
50% 132 259 96
40% 132 259 122
30% 132 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 241 34
95% 132 241 55
90% 132 241 58
70% 132 241 69
50% 132 241 107
40% 132 241 130
30% 132 241 151
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA G24A TRP-TRNA TRP rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU protein, length: 405 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 5757
95% 20 30 882
90% 20 31 881
70% 34 56 406
50% 36 58 413
40% 36 58 439
30% 51 79 322
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 222 39
95% 125 222 65
90% 125 222 69
70% 125 222 82
50% 140 285 76
40% 140 285 100
30% 140 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 253 31
95% 132 261 39
90% 132 261 42
70% 132 261 53
50% 171 368 40
40% 171 369 54
30% 171 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 260 25
95% 132 260 42
90% 132 260 44
70% 132 260 56
50% 172 372 37
40% 172 372 50
30% 172 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 265 18
95% 140 271 33
90% 140 271 35
70% 140 271 47
50% 140 271 87
40% 140 271 112
30% 166 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 264 19
95% 133 265 37
90% 133 265 39
70% 133 265 49
50% 159 313 56
40% 159 314 72
30% 159 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 260 21
95% 132 260 40
90% 133 264 40
70% 133 264 50
50% 174 374 35
40% 175 376 47
30% 178 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 147 79
95% 132 260 44
90% 132 260 47
70% 132 260 58
50% 171 368 41
40% 171 368 56
30% 173 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.