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THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
2Y0W
Sequence Clusters for the Sequence Entities in PDB 2Y0W
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 252 29
95% 142 254 48
90% 142 254 51
70% 142 254 63
50% 187 369 34
40% 187 369 48
30% 187 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 255 27
95% 142 255 44
90% 142 255 47
70% 142 255 59
50% 181 363 42
40% 185 403 39
30% 185 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 224 37
95% 142 262 36
90% 142 262 38
70% 181 375 24
50% 181 375 33
40% 181 375 47
30% 181 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 256 24
95% 142 256 42
90% 142 256 45
70% 142 256 57
50% 181 365 39
40% 181 365 53
30% 183 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 254 28
95% 142 254 49
90% 142 254 52
70% 142 254 64
50% 142 254 99
40% 142 254 124
30% 142 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 258 21
95% 146 263 35
90% 146 263 37
70% 146 263 48
50% 188 376 32
40% 188 376 45
30% 188 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 250 31
95% 142 255 46
90% 142 255 49
70% 142 255 61
50% 142 255 97
40% 142 255 122
30% 181 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 157 62
95% 141 249 51
90% 142 253 53
70% 142 253 65
50% 142 253 100
40% 142 253 126
30% 142 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 172 49
95% 136 221 64
90% 136 221 68
70% 136 221 81
50% 136 221 116
40% 136 221 144
30% 136 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 223 38
95% 136 223 63
90% 136 223 67
70% 136 223 80
50% 182 366 38
40% 182 366 52
30% 182 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 255 25
95% 142 256 39
90% 142 256 43
70% 142 256 55
50% 142 256 96
40% 181 363 55
30% 181 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 193 43
95% 142 254 47
90% 142 254 50
70% 142 254 62
50% 142 254 98
40% 142 254 123
30% 142 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 238 34
95% 142 238 55
90% 142 238 59
70% 142 238 71
50% 142 238 110
40% 142 238 133
30% 142 238 153
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA A9C TRP-TRNA TRP rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU protein, length: 405 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 24643
95% 23 30 878
90% 23 31 877
70% 37 56 405
50% 39 58 412
40% 39 58 439
30% 55 79 322
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 219 39
95% 135 219 66
90% 135 219 70
70% 135 219 83
50% 150 282 81
40% 150 282 101
30% 150 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 248 32
95% 142 256 40
90% 142 256 44
70% 142 256 56
50% 181 363 40
40% 181 364 54
30% 181 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 255 26
95% 142 255 43
90% 142 255 46
70% 142 255 58
50% 182 367 37
40% 182 367 51
30% 182 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 260 18
95% 150 266 34
90% 150 266 36
70% 150 266 47
50% 150 266 88
40% 150 266 112
30% 176 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 259 20
95% 143 260 37
90% 143 260 39
70% 143 260 51
50% 169 308 57
40% 169 309 74
30% 169 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 255 23
95% 142 255 41
90% 143 259 40
70% 143 259 52
50% 184 369 36
40% 185 371 49
30% 188 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 142 82
95% 142 255 45
90% 142 255 48
70% 142 255 60
50% 181 363 41
40% 181 363 56
30% 183 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.