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THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME
Sequence Clustering and Redundancy Reduction Results
2Y0U
Sequence Clusters for the Sequence Entities in PDB 2Y0U
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 252 29
95% 141 254 48
90% 141 254 51
70% 141 254 63
50% 186 369 35
40% 186 369 48
30% 186 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 255 27
95% 141 255 44
90% 141 255 47
70% 141 255 59
50% 180 363 42
40% 184 403 39
30% 184 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 224 37
95% 141 262 36
90% 141 262 38
70% 180 375 25
50% 180 375 34
40% 180 375 47
30% 180 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 256 24
95% 141 256 42
90% 141 256 45
70% 141 256 57
50% 180 365 39
40% 180 365 54
30% 182 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 254 28
95% 141 254 49
90% 141 254 52
70% 141 254 64
50% 141 254 99
40% 141 254 124
30% 141 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 258 22
95% 145 263 35
90% 145 263 37
70% 145 263 48
50% 187 376 32
40% 187 376 45
30% 187 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 250 31
95% 141 255 46
90% 141 255 49
70% 141 255 61
50% 141 255 97
40% 141 255 122
30% 180 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 157 62
95% 140 249 51
90% 141 253 53
70% 141 253 65
50% 141 253 100
40% 141 253 126
30% 141 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 172 49
95% 135 221 64
90% 135 221 68
70% 135 221 81
50% 135 221 116
40% 135 221 144
30% 135 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 223 38
95% 135 223 63
90% 135 223 67
70% 135 223 80
50% 181 366 38
40% 181 366 53
30% 181 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 255 25
95% 141 256 39
90% 141 256 43
70% 141 256 55
50% 141 256 96
40% 180 363 56
30% 180 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 193 43
95% 141 254 47
90% 141 254 50
70% 141 254 62
50% 141 254 98
40% 141 254 123
30% 141 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 238 34
95% 141 238 55
90% 141 238 59
70% 141 238 71
50% 141 238 110
40% 141 238 133
30% 141 238 153
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA A9C TRP-TRNA TRP rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU protein, length: 405 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 24696
95% 22 30 878
90% 22 31 877
70% 36 56 406
50% 38 58 412
40% 38 58 439
30% 54 79 322
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 219 39
95% 134 219 66
90% 134 219 70
70% 134 219 83
50% 149 282 81
40% 149 282 102
30% 149 282 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 248 32
95% 141 256 40
90% 141 256 44
70% 141 256 56
50% 180 363 40
40% 180 364 55
30% 180 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 255 26
95% 141 255 43
90% 141 255 46
70% 141 255 58
50% 181 367 37
40% 181 367 52
30% 181 369 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 260 18
95% 149 266 34
90% 149 266 36
70% 149 266 47
50% 149 266 88
40% 149 266 112
30% 175 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 259 20
95% 142 260 37
90% 142 260 39
70% 142 260 51
50% 168 308 57
40% 168 309 74
30% 168 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 255 23
95% 141 255 41
90% 142 259 40
70% 142 259 52
50% 183 369 36
40% 184 371 49
30% 187 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 142 82
95% 141 255 45
90% 141 255 48
70% 141 255 60
50% 180 363 41
40% 180 363 57
30% 182 399 60
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.